def get_tool_job_log(experiment_id, job_id):
"""
.. http:get:: /api/experiments/(string:experiment_id)/tools/jobs/(string:job_id)/log
Get the log output of a :class:`ToolJob <tmlib.tools.jobs.ToolJob>`
for a given :class:`ToolResult <tmlib.models.result.ToolResult>`.
**Example response**:
.. sourcecode:: http
HTTP/1.1 200 OK
Content-Type: application/json
{
"data": {
"stdout": "bla bla bla",
"stderr": ""
}
}
:statuscode 400: malformed request
:statuscode 200: no error
"""
logger.info('get log of tool job %d for experiment %d', job_id,
experiment_id)
job = gc3pie.retrieve_task(job_id)
stdout_file = os.path.join(job.output_dir, job.stdout)
with open(stdout_file, 'r') as f:
out = f.read()
stderr_file = os.path.join(job.output_dir, job.stderr)
with open(stderr_file, 'r') as f:
err = f.read()
return jsonify(data={'stdout': out, 'stderr': err})
def get_job_log(experiment_id, job_id):
"""
.. http:get:: /api/experiments/(string:experiment_id)/workflow/jobs/(string:job_id)/log
Get the log output of a
:class:`WorkflowStepJob <tmlib.workflow.jobs.WorkflowStepJob>`.
**Example response**:
.. sourcecode:: http
HTTP/1.1 200 OK
Content-Type: application/json
{
"data": {
"stdout": string,
"stderr": string
}
}
:reqheader Authorization: JWT token issued by the server
:statuscode 200: no error
"""
logger.info(
'get job log output for experiment %d and job %d',
experiment_id, job_id
)
# NOTE: This is the persistent task ID of the job
job = gc3pie.retrieve_task(job_id)
stdout_file = os.path.join(job.output_dir, job.stdout)
with open(stdout_file, 'r') as f:
out = f.read()
stderr_file = os.path.join(job.output_dir, job.stderr)
with open(stderr_file, 'r') as f:
err = f.read()
return jsonify(data={'stdout': out, 'stderr': err})
def get_tool_job_log(experiment_id, job_id):
"""
.. http:get:: /api/experiments/(string:experiment_id)/tools/jobs/(string:job_id)/log
Get the log output of a :class:`ToolJob <tmlib.tools.jobs.ToolJob>`
for a given :class:`ToolResult <tmlib.models.result.ToolResult>`.
**Example response**:
.. sourcecode:: http
HTTP/1.1 200 OK
Content-Type: application/json
{
"data": {
"stdout": "bla bla bla",
"stderr": ""
}
}
:statuscode 400: malformed request
:statuscode 200: no error
"""
logger.info(
'get log of tool job %d for experiment %d',
job_id, experiment_id
)
job = gc3pie.retrieve_task(job_id)
stdout_file = os.path.join(job.output_dir, job.stdout)
with open(stdout_file, 'r') as f:
out = f.read()
stderr_file = os.path.join(job.output_dir, job.stderr)
with open(stderr_file, 'r') as f:
err = f.read()
return jsonify(data={'stdout': out, 'stderr': err})
def get_job_log(experiment_id, job_id):
"""
.. http:get:: /api/experiments/(string:experiment_id)/workflow/jobs/(string:job_id)/log
Get the log output of a
:class:`WorkflowStepJob <tmlib.workflow.jobs.WorkflowStepJob>`.
**Example response**:
.. sourcecode:: http
HTTP/1.1 200 OK
Content-Type: application/json
{
"data": {
"stdout": string,
"stderr": string
}
}
:reqheader Authorization: JWT token issued by the server
:statuscode 200: no error
"""
logger.info('get job log output for experiment %d and job %d',
experiment_id, job_id)
# NOTE: This is the persistent task ID of the job
job = gc3pie.retrieve_task(job_id)
stdout_file = os.path.join(job.output_dir, job.stdout)
with open(stdout_file, 'r') as f:
out = f.read()
stderr_file = os.path.join(job.output_dir, job.stderr)
with open(stderr_file, 'r') as f:
err = f.read()
return jsonify(data={'stdout': out, 'stderr': err})
def kill_jobs(experiment_id):
'''Kills submitted jobs.'''
# TODO
task = gc3pie.retrieve_task(task_id)
gc3pie.kill_task(task)
def kill_jobs(experiment_id):
'''Kills submitted jobs.'''
# TODO
task = gc3pie.retrieve_task(task_id)
gc3pie.kill_task(task)
