def _runScript(self, toilOptions):
# clean = onSuccess
disallowedOptions = ['--clean=always', '--retryCount=2']
newOptions = [
option for option in toilOptions if option not in disallowedOptions
]
try:
# include a default memory - on restart the minimum memory requirement is the default, usually 2 GB
command = [
'/home/venv/bin/python', self.scriptName, '-e', 'FAIL=true',
'--defaultMemory=50000000'
]
command.extend(newOptions)
self.sshUtil(command)
except subprocess.CalledProcessError:
pass
else:
self.fail('Command succeeded when we expected failure')
with timeLimit(600):
command = [
'/home/venv/bin/python', self.scriptName, '--restart',
'--defaultMemory=50000000'
]
command.extend(toilOptions)
self.sshUtil(command)
def _runScript(self, toilOptions):
# Use the provisioner in the workflow
toilOptions.extend([
'--provisioner=aws', '--batchSystem=mesos',
'--nodeTypes=' + ",".join(self.instanceTypes),
'--maxNodes=' + ",".join(self.numWorkers)
])
# clean = onSuccess
disallowedOptions = ['--clean=always', '--retryCount=2']
newOptions = [
option for option in toilOptions if option not in disallowedOptions
]
try:
# include a default memory - on restart the minimum memory requirement is the default, usually 2 GB
command = [
self.python(),
self.script(), '--setEnv', 'FAIL=true',
'--defaultMemory=50000000'
]
command.extend(newOptions)
self.sshUtil(command)
except subprocess.CalledProcessError:
pass
else:
self.fail('Command succeeded when we expected failure')
with timeLimit(600):
command = [
self.python(),
self.script(), '--restart', '--defaultMemory=50000000'
]
command.extend(toilOptions)
self.sshUtil(command)
def _runScript(self, toilOptions):
# clean = onSuccess
disallowedOptions = ['--clean=always', '--retryCount=2']
newOptions = [option for option in toilOptions if option not in disallowedOptions]
try:
self._leader('python', self.scriptName, self.jobStore, '-e', 'FAIL=true', *newOptions)
except subprocess.CalledProcessError:
pass
else:
self.fail('Command succeeded when we expected failure')
with timeLimit(300):
self._leader('python', self.scriptName, self.jobStore, '--restart', *toilOptions)
def _runScript(self, toilOptions):
# clean = onSuccess
disallowedOptions = ["--clean=always", "--retryCount=2"]
newOptions = [option for option in toilOptions if option not in disallowedOptions]
try:
self._leader("python", self.scriptName, self.jobStore, "-e", "FAIL=true", *newOptions)
except subprocess.CalledProcessError:
pass
else:
self.fail("Command succeeded when we expected failure")
with timeLimit(300):
self._leader("python", self.scriptName, self.jobStore, "--restart", *toilOptions)
def _runScript(self, toilOptions):
# clean = onSuccess
disallowedOptions = ['--clean=always', '--retryCount=2']
newOptions = [
option for option in toilOptions if option not in disallowedOptions
]
try:
self._leader('python', self.scriptName, self.jobStore, '-e',
'FAIL=true', *newOptions)
except subprocess.CalledProcessError:
pass
else:
self.fail('Command succeeded when we expected failure')
with timeLimit(300):
self._leader('python', self.scriptName, self.jobStore, '--restart',
*toilOptions)
def _runScript(self, toilOptions):
# clean = onSuccess
disallowedOptions = ['--clean=always', '--retryCount=2']
newOptions = [option for option in toilOptions if option not in disallowedOptions]
try:
# include a default memory - on restart the minimum memory requirement is the default, usually 2 GB
command = ['/home/venv/bin/python', self.scriptName, '-e', 'FAIL=true', '--defaultMemory=50000000']
command.extend(newOptions)
self.sshUtil(command)
except subprocess.CalledProcessError:
pass
else:
self.fail('Command succeeded when we expected failure')
with timeLimit(600):
command = ['/home/venv/bin/python', self.scriptName, '--restart', '--defaultMemory=50000000']
command.extend(toilOptions)
self.sshUtil(command)
