def test_logger(monkeypatch):
"""Test logger function returns valid loggers."""
_my_logger = tolog.logger("tolkein")
assert isinstance(_my_logger, logging.Logger)
assert _my_logger.name == "tolkein"
assert _my_logger.level == logging.INFO
monkeypatch.setenv("DEBUG", "true")
_debug_logger = tolog.logger("debug")
assert isinstance(_debug_logger, logging.Logger)
assert _debug_logger.name == "debug"
assert _debug_logger.level == logging.DEBUG
def test_logger_output(monkeypatch, capsys):
"""Test logger function output."""
_my_logger = tolog.logger("tolkein")
_my_logger.info("message 1")
monkeypatch.setenv("DEBUG", "true")
_debug_logger = tolog.logger("debug")
_debug_logger.info("message 2")
_my_logger.debug("no message 3")
_debug_logger.debug("message 4")
out, err = capsys.readouterr()
assert "message 1" in err
assert "message 2" in err
assert "message 3" not in err
assert "message 4" in err
def test_DisableLogger(capsys):
"""Test log output with logger disabled."""
_my_logger = tolog.logger("tolkein")
with tolog.DisableLogger():
_my_logger.info("message 1")
_my_logger.error("message 2")
_my_logger.critical("message 3")
_my_logger.info("message 4")
out, err = capsys.readouterr()
assert "message 1" not in err
assert "message 2" not in err
assert "message 3" not in err
assert "message 4" in err
# 7. Filter a BlobDir:
./blobtools filter --param length--Min=5000 --output BlobDir_len_gt_5000 BlobDir
"""
import os
import sys
from docopt import DocoptExit
from docopt import docopt
from pkg_resources import working_set
from tolkein import tolog
from .lib.version import __version__
LOGGER = tolog.logger(__name__)
def cli():
"""Entry point."""
args = {}
if len(sys.argv) > 2:
try:
args = docopt(__doc__, help=False, version=__version__)
except DocoptExit:
args = {
"<command>": " ".join(sys.argv[1:2]),
}
elif len(sys.argv) > 1:
try:
args = docopt(__doc__, help=False, version=__version__)
