def get_repo_info_dict_for_repair(self, rdim, repository):
tool_panel_section_key = None
repository_clone_url = common_util.generate_clone_url_for_installed_repository(
self.app, repository)
repository_dependencies = rdim.get_repository_dependencies_for_installed_tool_shed_repository(
self.app, repository)
metadata = repository.metadata
if metadata:
tool_dependencies = metadata.get('tool_dependencies', None)
tool_panel_section_dict = metadata.get('tool_panel_section', None)
if tool_panel_section_dict:
# The repository must be in the uninstalled state. The structure of tool_panel_section_dict is:
# {<tool guid> :
# [{ 'id':<section id>, 'name':<section name>, 'version':<section version>, 'tool_config':<tool config file name> }]}
# Here is an example:
# {"localhost:9009/repos/test/filter/Filter1/1.1.0":
# [{"id": "filter_and_sort", "name": "Filter and Sort", "tool_config": "filtering.xml", "version": ""}]}
# Currently all tools contained within an installed tool shed repository must be loaded into the same
# section in the tool panel, so we can get the section id of the first guid in the tool_panel_section_dict.
# In the future, we'll have to handle different sections per guid.
guid = tool_panel_section_dict.keys()[0]
section_dicts = tool_panel_section_dict[guid]
section_dict = section_dicts[0]
tool_panel_section_id = section_dict['id']
tool_panel_section_name = section_dict['name']
if tool_panel_section_id:
tpm = tool_panel_manager.ToolPanelManager(self.app)
tool_panel_section_key, _ = \
tpm.get_or_create_tool_section( self.app.toolbox,
tool_panel_section_id=tool_panel_section_id,
new_tool_panel_section_label=tool_panel_section_name )
else:
tool_dependencies = None
repo_info_dict = repository_util.create_repo_info_dict(
app=self.app,
repository_clone_url=repository_clone_url,
changeset_revision=repository.changeset_revision,
ctx_rev=repository.ctx_rev,
repository_owner=repository.owner,
repository_name=repository.name,
repository=None,
repository_metadata=None,
tool_dependencies=tool_dependencies,
repository_dependencies=repository_dependencies)
return repo_info_dict, tool_panel_section_key
def get_repo_info_dict_for_repair( self, rdim, repository ):
tool_panel_section_key = None
repository_clone_url = common_util.generate_clone_url_for_installed_repository( self.app, repository )
repository_dependencies = rdim.get_repository_dependencies_for_installed_tool_shed_repository( self.app,
repository )
metadata = repository.metadata
if metadata:
tool_dependencies = metadata.get( 'tool_dependencies', None )
tool_panel_section_dict = metadata.get( 'tool_panel_section', None )
if tool_panel_section_dict:
# The repository must be in the uninstalled state. The structure of tool_panel_section_dict is:
# {<tool guid> :
# [{ 'id':<section id>, 'name':<section name>, 'version':<section version>, 'tool_config':<tool config file name> }]}
# Here is an example:
# {"localhost:9009/repos/test/filter/Filter1/1.1.0":
# [{"id": "filter_and_sort", "name": "Filter and Sort", "tool_config": "filtering.xml", "version": ""}]}
# Currently all tools contained within an installed tool shed repository must be loaded into the same
# section in the tool panel, so we can get the section id of the first guid in the tool_panel_section_dict.
# In the future, we'll have to handle different sections per guid.
guid = tool_panel_section_dict.keys()[ 0 ]
section_dicts = tool_panel_section_dict[ guid ]
section_dict = section_dicts[ 0 ]
tool_panel_section_id = section_dict[ 'id' ]
tool_panel_section_name = section_dict[ 'name' ]
if tool_panel_section_id:
tpm = tool_panel_manager.ToolPanelManager( self.app )
tool_panel_section_key, _ = \
tpm.get_or_create_tool_section( self.app.toolbox,
tool_panel_section_id=tool_panel_section_id,
new_tool_panel_section_label=tool_panel_section_name )
else:
tool_dependencies = None
repo_info_dict = repository_util.create_repo_info_dict( app=self.app,
repository_clone_url=repository_clone_url,
changeset_revision=repository.changeset_revision,
ctx_rev=repository.ctx_rev,
repository_owner=repository.owner,
repository_name=repository.name,
repository=None,
repository_metadata=None,
tool_dependencies=tool_dependencies,
repository_dependencies=repository_dependencies )
return repo_info_dict, tool_panel_section_key