def require_distributed_retrieval(test_case):
"""
Decorator marking a test that requires a set of dependencies necessary for pefrorm retrieval with
:class:`~transformers.RagRetriever`.
These tests are skipped when respective libraries are not installed.
"""
if not (is_torch_available() and is_datasets_available() and is_faiss_available() and is_psutil_available()):
test_case = unittest.skip("test requires PyTorch, Datasets, Faiss, psutil")(test_case)
return test_case
def require_retrieval(test_case):
"""
Decorator marking a test that requires a set of dependencies necessary for pefrorm retrieval with
:class:`~transformers.RagRetriever`.
These tests are skipped when respective libraries are not installed.
"""
if not (is_tf_available() and is_datasets_available() and is_faiss_available()):
test_case = unittest.skip("test requires tensorflow, datasets and faiss")(test_case)
return test_case
def require_retrieval(test_case):
"""
Decorator marking a test that requires a set of dependencies necessary for pefrorm retrieval with
[`RagRetriever`].
These tests are skipped when respective libraries are not installed.
"""
if not (is_torch_available() and is_datasets_available()
and is_faiss_available()):
test_case = unittest.skip("test requires PyTorch, datasets and faiss")(
test_case)
return test_case
def test_finetune_bert2bert(self):
if not is_datasets_available():
return
import datasets
bert2bert = EncoderDecoderModel.from_encoder_decoder_pretrained(
"prajjwal1/bert-tiny", "prajjwal1/bert-tiny")
tokenizer = BertTokenizer.from_pretrained("bert-base-uncased")
bert2bert.config.vocab_size = bert2bert.config.encoder.vocab_size
bert2bert.config.eos_token_id = tokenizer.sep_token_id
bert2bert.config.decoder_start_token_id = tokenizer.cls_token_id
bert2bert.config.max_length = 128
train_dataset = datasets.load_dataset("cnn_dailymail",
"3.0.0",
split="train[:1%]")
val_dataset = datasets.load_dataset("cnn_dailymail",
"3.0.0",
split="validation[:1%]")
train_dataset = train_dataset.select(range(32))
val_dataset = val_dataset.select(range(16))
rouge = datasets.load_metric("rouge")
batch_size = 4
def _map_to_encoder_decoder_inputs(batch):
# Tokenizer will automatically set [BOS] <text> [EOS]
inputs = tokenizer(batch["article"],
padding="max_length",
truncation=True,
max_length=512)
outputs = tokenizer(batch["highlights"],
padding="max_length",
truncation=True,
max_length=128)
batch["input_ids"] = inputs.input_ids
batch["attention_mask"] = inputs.attention_mask
batch["decoder_input_ids"] = outputs.input_ids
batch["labels"] = outputs.input_ids.copy()
batch["labels"] = [[
-100 if token == tokenizer.pad_token_id else token
for token in labels
] for labels in batch["labels"]]
batch["decoder_attention_mask"] = outputs.attention_mask
assert all([len(x) == 512 for x in inputs.input_ids])
assert all([len(x) == 128 for x in outputs.input_ids])
return batch
def _compute_metrics(pred):
labels_ids = pred.label_ids
pred_ids = pred.predictions
# all unnecessary tokens are removed
pred_str = tokenizer.batch_decode(pred_ids,
skip_special_tokens=True)
label_str = tokenizer.batch_decode(labels_ids,
skip_special_tokens=True)
rouge_output = rouge.compute(predictions=pred_str,
references=label_str,
rouge_types=["rouge2"])["rouge2"].mid
return {
"rouge2_precision": round(rouge_output.precision, 4),
"rouge2_recall": round(rouge_output.recall, 4),
"rouge2_fmeasure": round(rouge_output.fmeasure, 4),
}
# map train dataset
train_dataset = train_dataset.map(
_map_to_encoder_decoder_inputs,
batched=True,
batch_size=batch_size,
remove_columns=["article", "highlights"],
)
train_dataset.set_format(
type="torch",
columns=[
"input_ids", "attention_mask", "decoder_input_ids",
"decoder_attention_mask", "labels"
],
)
# same for validation dataset
val_dataset = val_dataset.map(
_map_to_encoder_decoder_inputs,
batched=True,
batch_size=batch_size,
remove_columns=["article", "highlights"],
)
val_dataset.set_format(
type="torch",
columns=[
"input_ids", "attention_mask", "decoder_input_ids",
"decoder_attention_mask", "labels"
],
)
output_dir = self.get_auto_remove_tmp_dir()
training_args = Seq2SeqTrainingArguments(
output_dir=output_dir,
per_device_train_batch_size=batch_size,
per_device_eval_batch_size=batch_size,
predict_with_generate=True,
evaluation_strategy="steps",
do_train=True,
do_eval=True,
warmup_steps=0,
eval_steps=2,
logging_steps=2,
)
# instantiate trainer
trainer = Seq2SeqTrainer(
model=bert2bert,
args=training_args,
compute_metrics=_compute_metrics,
train_dataset=train_dataset,
eval_dataset=val_dataset,
)
# start training
trainer.train()
class RagTestMixin:
all_model_classes = ((RagModel, RagTokenForGeneration,
RagSequenceForGeneration)
if is_torch_available() and is_datasets_available()
and is_faiss_available() else ())
retrieval_vector_size = 32
n_docs = 3
max_combined_length = 16
def setUp(self):
self.tmpdirname = tempfile.mkdtemp()
# DPR tok
vocab_tokens = [
"[UNK]",
"[CLS]",
"[SEP]",
"[PAD]",
"[MASK]",
"want",
"##want",
"##ed",
"wa",
"un",
"runn",
"##ing",
",",
"low",
"lowest",
]
dpr_tokenizer_path = os.path.join(self.tmpdirname, "dpr_tokenizer")
os.makedirs(dpr_tokenizer_path, exist_ok=True)
self.vocab_file = os.path.join(dpr_tokenizer_path,
DPR_VOCAB_FILES_NAMES["vocab_file"])
with open(self.vocab_file, "w", encoding="utf-8") as vocab_writer:
vocab_writer.write("".join([x + "\n" for x in vocab_tokens]))
# BART tok
vocab = [
"l",
"o",
"w",
"e",
"r",
"s",
"t",
"i",
"d",
"n",
"\u0120",
"\u0120l",
"\u0120n",
"\u0120lo",
"\u0120low",
"er",
"\u0120lowest",
"\u0120newer",
"\u0120wider",
"<unk>",
]
vocab_tokens = dict(zip(vocab, range(len(vocab))))
merges = [
"#version: 0.2", "\u0120 l", "\u0120l o", "\u0120lo w", "e r", ""
]
self.special_tokens_map = {"unk_token": "<unk>"}
bart_tokenizer_path = os.path.join(self.tmpdirname, "bart_tokenizer")
os.makedirs(bart_tokenizer_path, exist_ok=True)
self.vocab_file = os.path.join(bart_tokenizer_path,
BART_VOCAB_FILES_NAMES["vocab_file"])
self.merges_file = os.path.join(bart_tokenizer_path,
BART_VOCAB_FILES_NAMES["merges_file"])
with open(self.vocab_file, "w", encoding="utf-8") as fp:
fp.write(json.dumps(vocab_tokens) + "\n")
with open(self.merges_file, "w", encoding="utf-8") as fp:
fp.write("\n".join(merges))
t5_tokenizer = T5Tokenizer(T5_SAMPLE_VOCAB)
t5_tokenizer_path = os.path.join(self.tmpdirname, "t5_tokenizer")
t5_tokenizer.save_pretrained(t5_tokenizer_path)
@cached_property
def dpr_tokenizer(self) -> DPRQuestionEncoderTokenizer:
return DPRQuestionEncoderTokenizer.from_pretrained(
os.path.join(self.tmpdirname, "dpr_tokenizer"))
@cached_property
def bart_tokenizer(self) -> BartTokenizer:
return BartTokenizer.from_pretrained(
os.path.join(self.tmpdirname, "bart_tokenizer"))
@cached_property
def t5_tokenizer(self) -> BartTokenizer:
return T5Tokenizer.from_pretrained(
os.path.join(self.tmpdirname, "t5_tokenizer"))
def tearDown(self):
shutil.rmtree(self.tmpdirname)
def get_retriever(self, config):
dataset = Dataset.from_dict({
"id": ["0", "1", "3"],
"text": ["foo", "bar", "qux"],
"title": ["Foo", "Bar", "Qux"],
"embeddings": [
np.ones(self.retrieval_vector_size),
2 * np.ones(self.retrieval_vector_size),
3 * np.ones(self.retrieval_vector_size),
],
})
dataset.add_faiss_index("embeddings",
string_factory="Flat",
metric_type=faiss.METRIC_INNER_PRODUCT)
tokenizer = self.bart_tokenizer if config.generator.model_type == "bart" else self.t5_tokenizer
with patch("transformers.retrieval_rag.load_dataset"
) as mock_load_dataset:
mock_load_dataset.return_value = dataset
retriever = RagRetriever(
config,
question_encoder_tokenizer=self.dpr_tokenizer,
generator_tokenizer=tokenizer,
)
return retriever
def check_model_with_retriever(self, config, input_ids, attention_mask,
decoder_input_ids, decoder_attention_mask,
**kwargs):
self.assertIsNotNone(config.question_encoder)
self.assertIsNotNone(config.generator)
for model_class in self.all_model_classes:
model = model_class(
config, retriever=self.get_retriever(config)).to(torch_device)
model.eval()
self.assertTrue(model.config.is_encoder_decoder)
outputs = model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
)
# logits
self.assertEqual(
outputs.logits.shape,
(self.n_docs * decoder_input_ids.shape[0],
decoder_input_ids.shape[1], config.generator.vocab_size),
)
# generator encoder last hidden states
self.assertEqual(
outputs.generator_enc_last_hidden_state.shape,
(self.n_docs * decoder_input_ids.shape[0],
self.max_combined_length, config.generator.hidden_size),
)
# doc scores
self.assertEqual(outputs.doc_scores.shape,
(input_ids.shape[0], self.n_docs))
def check_model_generate(self, config, input_ids, attention_mask,
decoder_input_ids, decoder_attention_mask,
**kwargs):
self.assertIsNotNone(config.question_encoder)
self.assertIsNotNone(config.generator)
for model_class in self.all_model_classes[1:]:
model = model_class(
config, retriever=self.get_retriever(config)).to(torch_device)
model.eval()
self.assertTrue(model.config.is_encoder_decoder)
outputs = model.generate(
input_ids=input_ids,
num_beams=2,
num_return_sequences=2,
decoder_start_token_id=config.generator.eos_token_id,
)
self.assertIsNotNone(outputs)
def check_model_without_retriever(self, config, input_ids, attention_mask,
decoder_input_ids,
decoder_attention_mask, **kwargs):
self.assertIsNotNone(config.question_encoder)
self.assertIsNotNone(config.generator)
retriever = self.get_retriever(config)
for model_class in self.all_model_classes:
model = model_class(config).to(torch_device)
model.eval()
self.assertTrue(model.config.is_encoder_decoder)
question_hidden_states = model.question_encoder(
input_ids, attention_mask=attention_mask)[0]
out = retriever(
input_ids,
question_hidden_states.cpu().detach().to(
torch.float32).numpy(),
prefix=config.generator.prefix,
return_tensors="pt",
)
context_input_ids, context_attention_mask, retrieved_doc_embeds = (
out["context_input_ids"],
out["context_attention_mask"],
out["retrieved_doc_embeds"],
)
# cast
retrieved_doc_embeds = retrieved_doc_embeds.to(
question_hidden_states)
context_input_ids = context_input_ids.to(input_ids)
context_attention_mask = context_attention_mask.to(input_ids)
# compute doc_scores
doc_scores = torch.bmm(question_hidden_states.unsqueeze(1),
retrieved_doc_embeds.transpose(
1, 2)).squeeze(1)
outputs = model(
context_input_ids=context_input_ids,
context_attention_mask=context_attention_mask,
doc_scores=doc_scores,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
)
# logits
self.assertEqual(
outputs.logits.shape,
(self.n_docs * decoder_input_ids.shape[0],
decoder_input_ids.shape[1], config.generator.vocab_size),
)
# generator encoder last hidden states
self.assertEqual(
outputs.generator_enc_last_hidden_state.shape,
(self.n_docs * decoder_input_ids.shape[0],
self.max_combined_length, config.generator.hidden_size),
)
# doc scores
self.assertEqual(outputs.doc_scores.shape,
(input_ids.shape[0], self.n_docs))
def check_model_custom_n_docs(self, config, input_ids, attention_mask,
decoder_input_ids, decoder_attention_mask,
n_docs, **kwargs):
self.assertIsNotNone(config.question_encoder)
self.assertIsNotNone(config.generator)
retriever = self.get_retriever(config)
for model_class in self.all_model_classes:
model = model_class(config).to(torch_device)
model.eval()
self.assertTrue(model.config.is_encoder_decoder)
question_hidden_states = model.question_encoder(
input_ids, attention_mask=attention_mask)[0]
out = retriever(
input_ids,
question_hidden_states.cpu().detach().to(
torch.float32).numpy(),
prefix=config.generator.prefix,
return_tensors="pt",
n_docs=n_docs,
)
context_input_ids, context_attention_mask, retrieved_doc_embeds = (
out["context_input_ids"],
out["context_attention_mask"],
out["retrieved_doc_embeds"],
)
# cast
retrieved_doc_embeds = retrieved_doc_embeds.to(
question_hidden_states)
context_input_ids = context_input_ids.to(input_ids)
context_attention_mask = context_attention_mask.to(input_ids)
# compute doc_scores
doc_scores = torch.bmm(question_hidden_states.unsqueeze(1),
retrieved_doc_embeds.transpose(
1, 2)).squeeze(1)
outputs = model(
context_input_ids=context_input_ids,
context_attention_mask=context_attention_mask,
doc_scores=doc_scores,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
n_docs=n_docs,
)
# logits
self.assertEqual(
outputs.logits.shape,
(n_docs * decoder_input_ids.shape[0],
decoder_input_ids.shape[1], config.generator.vocab_size),
)
# generator encoder last hidden states
self.assertEqual(
outputs.generator_enc_last_hidden_state.shape,
(n_docs * decoder_input_ids.shape[0], self.max_combined_length,
config.generator.hidden_size),
)
# doc scores
self.assertEqual(outputs.doc_scores.shape,
(input_ids.shape[0], n_docs))
def check_model_with_mismatch_n_docs_value(self, config, input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
retriever_n_docs,
generator_n_docs, **kwargs):
self.assertIsNotNone(config.question_encoder)
self.assertIsNotNone(config.generator)
retriever = self.get_retriever(config)
for model_class in self.all_model_classes:
model = model_class(config).to(torch_device)
model.eval()
self.assertTrue(model.config.is_encoder_decoder)
question_hidden_states = model.question_encoder(
input_ids, attention_mask=attention_mask)[0]
out = retriever(
input_ids,
question_hidden_states.cpu().detach().to(
torch.float32).numpy(),
prefix=config.generator.prefix,
return_tensors="pt",
n_docs=retriever_n_docs,
)
context_input_ids, context_attention_mask, retrieved_doc_embeds = (
out["context_input_ids"],
out["context_attention_mask"],
out["retrieved_doc_embeds"],
)
# cast
retrieved_doc_embeds = retrieved_doc_embeds.to(
question_hidden_states)
context_input_ids = context_input_ids.to(input_ids)
context_attention_mask = context_attention_mask.to(input_ids)
# compute doc_scores
doc_scores = torch.bmm(question_hidden_states.unsqueeze(1),
retrieved_doc_embeds.transpose(
1, 2)).squeeze(1)
self.assertRaises(
AssertionError,
model.__call__,
context_input_ids=context_input_ids,
context_attention_mask=context_attention_mask,
doc_scores=doc_scores,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
n_docs=generator_n_docs,
)
def check_model_with_encoder_outputs(self, config, input_ids,
attention_mask, decoder_input_ids,
decoder_attention_mask, **kwargs):
self.assertIsNotNone(config.question_encoder)
self.assertIsNotNone(config.generator)
for model_class in self.all_model_classes:
model = model_class(
config, retriever=self.get_retriever(config)).to(torch_device)
model.eval()
self.assertTrue(model.config.is_encoder_decoder)
outputs = model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
)
encoder_outputs = BaseModelOutput(
outputs.generator_enc_last_hidden_state)
# run only generator
outputs = model(
encoder_outputs=encoder_outputs,
doc_scores=outputs.doc_scores,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
)
# logits
self.assertEqual(
outputs.logits.shape,
(self.n_docs * decoder_input_ids.shape[0],
decoder_input_ids.shape[1], config.generator.vocab_size),
)
# generator encoder last hidden states
self.assertEqual(
outputs.generator_enc_last_hidden_state.shape,
(self.n_docs * decoder_input_ids.shape[0],
self.max_combined_length, config.generator.hidden_size),
)
# doc scores
self.assertEqual(outputs.doc_scores.shape,
(input_ids.shape[0], self.n_docs))
def test_model_with_retriever(self):
inputs_dict = self.config_and_inputs
self.check_model_with_retriever(**inputs_dict)
def test_model_without_retriever(self):
inputs_dict = self.config_and_inputs
self.check_model_without_retriever(**inputs_dict)
def test_model_with_encoder_outputs(self):
inputs_dict = self.config_and_inputs
self.check_model_with_encoder_outputs(**inputs_dict)
def test_model_generate(self):
inputs_dict = self.config_and_inputs
self.check_model_generate(**inputs_dict)
def test_model_with_custom_n_docs(self):
inputs_dict = self.config_and_inputs
inputs_dict["n_docs"] = 1
self.check_model_custom_n_docs(**inputs_dict)
def test_model_with_mismatch_n_docs_value(self):
inputs_dict = self.config_and_inputs
inputs_dict["retriever_n_docs"] = 3
inputs_dict["generator_n_docs"] = 2
self.check_model_with_mismatch_n_docs_value(**inputs_dict)
from transformers.file_utils import cached_property, is_datasets_available, is_faiss_available, is_torch_available
from transformers.testing_utils import require_sentencepiece, require_tokenizers, require_torch, slow, torch_device
from transformers.tokenization_bert import VOCAB_FILES_NAMES as DPR_VOCAB_FILES_NAMES
from transformers.tokenization_dpr import DPRQuestionEncoderTokenizer
from transformers.tokenization_roberta import VOCAB_FILES_NAMES as BART_VOCAB_FILES_NAMES
from .test_modeling_bart import ModelTester as BartModelTester
from .test_modeling_dpr import DPRModelTester
from .test_modeling_t5 import T5ModelTester
TOLERANCE = 1e-3
T5_SAMPLE_VOCAB = os.path.join(os.path.dirname(os.path.abspath(__file__)),
"fixtures/test_sentencepiece.model")
if is_torch_available() and is_datasets_available() and is_faiss_available():
import torch
from datasets import Dataset
import faiss
from transformers import (
AutoConfig,
AutoModel,
AutoModelForSeq2SeqLM,
RagConfig,
RagModel,
RagRetriever,
RagSequenceForGeneration,
RagTokenForGeneration,
RagTokenizer,
)
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from transformers import BertTokenizer, EncoderDecoderModel, Seq2SeqTrainer, Seq2SeqTrainingArguments
from transformers.file_utils import is_datasets_available
from transformers.testing_utils import TestCasePlus, require_datasets, slow
if is_datasets_available():
import datasets
class Seq2seqTrainerTester(TestCasePlus):
@slow
@require_datasets
def test_finetune_bert2bert(self):
bert2bert = EncoderDecoderModel.from_encoder_decoder_pretrained("prajjwal1/bert-tiny", "prajjwal1/bert-tiny")
tokenizer = BertTokenizer.from_pretrained("bert-base-uncased")
bert2bert.config.vocab_size = bert2bert.config.encoder.vocab_size
bert2bert.config.eos_token_id = tokenizer.sep_token_id
bert2bert.config.decoder_start_token_id = tokenizer.cls_token_id
bert2bert.config.max_length = 128
