def create_and_check_attention_mask_determinism(self, config, input_ids,
token_type_ids, input_mask,
sequence_labels,
token_labels,
choice_labels):
model = LongformerModel(config=config)
model.to(torch_device)
model.eval()
attention_mask = torch.ones(input_ids.shape,
dtype=torch.long,
device=torch_device)
output_with_mask = model(
input_ids, attention_mask=attention_mask)["last_hidden_state"]
output_without_mask = model(input_ids)["last_hidden_state"]
self.parent.assertTrue(
torch.allclose(output_with_mask[0, 0, :5],
output_without_mask[0, 0, :5],
atol=1e-4))
def create_and_check_model_with_global_attention_mask(
self, config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
):
model = LongformerModel(config=config)
model.to(torch_device)
model.eval()
global_attention_mask = input_mask.clone()
global_attention_mask[:, input_mask.shape[-1] // 2] = 0
global_attention_mask = global_attention_mask.to(torch_device)
result = model(
input_ids,
attention_mask=input_mask,
global_attention_mask=global_attention_mask,
token_type_ids=token_type_ids,
)
result = model(input_ids, token_type_ids=token_type_ids, global_attention_mask=global_attention_mask)
result = model(input_ids, global_attention_mask=global_attention_mask)
self.parent.assertEqual(result.last_hidden_state.shape, (self.batch_size, self.seq_length, self.hidden_size))
self.parent.assertEqual(result.pooler_output.shape, (self.batch_size, self.hidden_size))
def create_and_check_longformer_model(self, config, input_ids,
token_type_ids, input_mask,
sequence_labels, token_labels,
choice_labels):
model = LongformerModel(config=config)
model.to(torch_device)
model.eval()
sequence_output, pooled_output = model(input_ids,
attention_mask=input_mask,
token_type_ids=token_type_ids)
sequence_output, pooled_output = model(input_ids,
token_type_ids=token_type_ids)
sequence_output, pooled_output = model(input_ids)
result = {
"sequence_output": sequence_output,
"pooled_output": pooled_output,
}
self.parent.assertListEqual(
list(result["sequence_output"].size()),
[self.batch_size, self.seq_length, self.hidden_size])
self.parent.assertListEqual(list(result["pooled_output"].size()),
[self.batch_size, self.hidden_size])
def __init__(self, model_name: str = "allenai/longformer-base-4096"):
self.model = LongformerModel.from_pretrained(model_name)
self.tokenizer = LongformerTokenizer.from_pretrained(model_name)
def __init__(self, config, project_dim: int = 0, seq_project=True):
LongformerModel.__init__(self, config)
assert config.hidden_size > 0, 'Encoder hidden_size can\'t be zero'
self.encode_proj = nn.Linear(config.hidden_size, project_dim) if project_dim != 0 else None
self.seq_project = seq_project
self.init_weights()
print(df.target.value_counts())
import torch
from transformers import DistilBertTokenizerFast, DistilBertModel, DistilBertConfig
from transformers import LongformerTokenizerFast, LongformerModel, LongformerConfig
#model_name = 'distilbert-base-uncased'
model_name = 'allenai/longformer-base-4096'
tokenizer = LongformerTokenizerFast.from_pretrained(model_name)
df["vecs"] = df.text.map(
lambda x: torch.LongTensor(tokenizer.encode(x)).unsqueeze(0))
config = LongformerConfig.from_pretrained(model_name,
output_hidden_states=True)
model = LongformerModel.from_pretrained(model_name, config=config)
device = 'cuda' if torch.cuda.is_available() else 'cpu'
device = 'cpu'
model = model.to(device)
input_tf = tokenizer.batch_encode_plus(df.text.to_list(),
return_tensors='pt',
padding=True)
#vecs = input_tf['input_ids'].to(device)
#granola_ids = granola_ids.to(device)
model.eval()
with torch.no_grad():
print("and GO!!!!")
from transformers import ElectraForMaskedLM, ElectraTokenizer
tokenizer = ElectraTokenizer.from_pretrained('google/electra-small-generator')
model = ElectraForMaskedLM.from_pretrained('google/electra-small-generator')
input_ids = torch.tensor(
tokenizer.encode("Hello, my dog is cute",
add_special_tokens=True)).unsqueeze(0) # Batch size 1
outputs = model(input_ids, masked_lm_labels=input_ids)
loss, prediction_scores = outputs[:2]
print(prediction_scores)
## Longformer
from transformers import LongformerModel, LongformerTokenizer
model = LongformerModel.from_pretrained('longformer-base-4096')
tokenizer = LongformerTokenizer.from_pretrained('longformer-base-4096')
SAMPLE_TEXT = ' '.join(['Hello world! '] * 1000) # long input document
input_ids = torch.tensor(tokenizer.encode(SAMPLE_TEXT)).unsqueeze(
0) # batch of size 1
# Attention mask values -- 0: no attention, 1: local attention, 2: global attention
attention_mask = torch.ones(
input_ids.shape, dtype=torch.long,
device=input_ids.device) # initialize to local attention
attention_mask[:, [
1,
4,
21,
]] = 2 # Set global attention based on the task. For example,
def test_all(args):
# Currently, the longformer attention operator could only run in GPU (no CPU implementation yet).
device = torch.device('cuda:0')
results = []
for model_name in args.models:
# Here we run an example input
from transformers import LongformerModel
torch_model_name_or_dir = PRETRAINED_LONGFORMER_MODELS[model_name]
model = LongformerModel.from_pretrained(
torch_model_name_or_dir) # pretrained model name or directory
model.to(device)
# Search onnx model in the following order: optimized fp16 model, optimized fp32 model, raw model
# TODO: call convert_longformer_to_onnx to export onnx instead.
import os.path
optimized = False
precision = 'fp32'
onnx_model_path = os.path.join(args.onnx_dir, model_name + ".onnx")
optimized_fp32_model = os.path.join(args.onnx_dir,
model_name + "_fp32.onnx")
optimized_fp16_model = os.path.join(args.onnx_dir,
model_name + "_fp16.onnx")
if os.path.isfile(optimized_fp16_model):
onnx_model_path = optimized_fp16_model
optimized = True
precision = 'fp16'
elif os.path.isfile(optimized_fp32_model):
onnx_model_path = optimized_fp32_model
optimized = True
print("ONNX model path:", onnx_model_path)
for num_threads in args.num_threads:
if "torch" in args.engines:
results += test_torch_latency(device, model, model_name,
args.batch_sizes,
args.sequence_lengths,
args.global_lengths,
args.test_times, num_threads,
args.verbose)
if "onnxruntime" in args.engines:
if args.memory:
test_ort_memory(device, onnx_model_path,
args.batch_sizes[0],
args.sequence_lengths[0],
args.global_lengths[0], args.test_times,
num_threads)
else: # test latency
session = benchmark_helper.create_onnxruntime_session(
onnx_model_path,
use_gpu=True,
enable_all_optimization=True,
num_threads=num_threads)
if session is None:
raise RuntimeError(
f"Failed to create ORT sesssion from ONNX file {onnx_model_path}"
)
results += test_ort_latency(
device, model, model_name, session, args.batch_sizes,
args.sequence_lengths, args.global_lengths,
args.test_times, num_threads, optimized, precision,
args.validate_onnx, args.disable_io_binding,
args.verbose)
return results
def __init__(self):
super(Model, self).__init__()
self.model = LongformerModel.from_pretrained(model_config.pretrain_model_path, gradient_checkpointing=True)
self.config = self.model.config
self.dropout = nn.Dropout(self.config.hidden_dropout_prob)
self.classifier = nn.Linear(self.config.hidden_size, config.num_labels)
from sentence_transformers import SentenceTransformer
from tqdm import tqdm
import gensim
from torch import nn as nn
from config import SBERT_MODEL_NAME
from utils.types import FolkLoreData, FolkLoreEmb, FolkLoreEmbCoarse
nlp = en_core_web_sm.load()
sbert_model = SentenceTransformer(SBERT_MODEL_NAME)
from transformers import LongformerModel, LongformerTokenizerFast, LongformerConfig
LFconfig = LongformerConfig.from_pretrained('allenai/longformer-base-4096')
LF_model = LongformerModel.from_pretrained('allenai/longformer-base-4096',
config=LFconfig)
LF_tokenizer = LongformerTokenizerFast.from_pretrained(
'allenai/longformer-base-4096')
LF_tokenizer.model_max_length = LF_model.config.max_position_embeddings
class MatrixVectorScaledDotProductAttention(nn.Module):
def __init__(self, temperature, attn_dropout=0.1):
super().__init__()
self.temperature = temperature
self.dropout = nn.Dropout(attn_dropout)
self.softmax = nn.Softmax(dim=1)
def forward(self, q, k, v, mask=None):
"""
q: tensor of shape (n*b, d_k)
def __init__(self, config):
super(LongformerQA, self).__init__(config)
self.longformer = LongformerModel(config)
self.qa_outputs = torch.nn.Linear(config.hidden_size,
config.num_labels)
self.init_weights()
def __init__(self, config_path):
config = configparser.ConfigParser()
config.read(config_path)
self.n_epoch = config.getint("general", "n_epoch")
self.batch_size = config.getint("general", "batch_size")
self.train_bert = config.getboolean("general", "train_bert")
self.lr = config.getfloat("general", "lr")
self.cut_frac = config.getfloat("general", "cut_frac")
self.log_dir = Path(config.get("general", "log_dir"))
if not self.log_dir.exists():
self.log_dir.mkdir(parents=True)
self.model_save_freq = config.getint("general", "model_save_freq")
self.device = "cuda" if torch.cuda.is_available() else "cpu"
# bert_config_path = config.get("bert", "config_path")
# bert_tokenizer_path = config.get("bert", "tokenizer_path")
# bert_model_path = config.get("bert", "model_path")
self.bert_tokenizer = LongformerTokenizer.from_pretrained(
'allenai/longformer-base-4096')
# self.bert_tokenizer = BertTokenizer.from_pretrained(bert_tokenizer_path)
tkzer_save_dir = self.log_dir / "tokenizer"
if not tkzer_save_dir.exists():
tkzer_save_dir.mkdir()
self.bert_tokenizer.save_pretrained(tkzer_save_dir)
self.bert_model = LongformerModel.from_pretrained(
'allenai/longformer-base-4096')
self.bert_config = self.bert_model.config
# self.bert_config = BertConfig.from_pretrained(bert_config_path)
# self.bert_model = BertModel.from_pretrained(bert_model_path, config=self.bert_config)
self.max_seq_length = self.bert_config.max_position_embeddings - 2
# self.max_seq_length = self.bert_config.max_position_embeddings
self.bert_model.to(self.device)
if self.train_bert:
self.bert_model.train()
else:
self.bert_model.eval()
train_conll_path = config.get("data", "train_path")
print("train path", train_conll_path)
assert Path(train_conll_path).exists()
dev_conll_path = config.get("data", "dev_path")
print("dev path", dev_conll_path)
assert Path(dev_conll_path).exists()
dev1_conll_path = Path(dev_conll_path) / "1"
print("dev1 path", dev1_conll_path)
assert dev1_conll_path.exists()
dev2_conll_path = Path(dev_conll_path) / "2"
print("dev2 path", dev2_conll_path)
assert dev2_conll_path.exists()
self.train_dataset = ConllDataset(train_conll_path)
# self.dev_dataset = ConllDataset(dev_conll_path)
self.dev1_dataset = ConllDataset(dev1_conll_path)
self.dev2_dataset = ConllDataset(dev2_conll_path)
if self.batch_size == -1:
self.batch_size = len(self.train_dataset)
self.scaler = torch.cuda.amp.GradScaler()
tb_cmt = f"lr_{self.lr}_cut-frac_{self.cut_frac}"
self.writer = SummaryWriter(log_dir=self.log_dir, comment=tb_cmt)
def __init__(self, task_configs=[],
device='cpu',
finetuning=True,
lm='bert',
bert_pt=None,
bert_path=None):
super().__init__()
assert len(task_configs) > 0
# load the model or model checkpoint
if bert_path == None:
if lm == 'bert':
self.bert = BertModel.from_pretrained(model_ckpts[lm])
elif lm == 'distilbert':
self.bert = DistilBertModel.from_pretrained(model_ckpts[lm])
elif lm == 'albert':
self.bert = AlbertModel.from_pretrained(model_ckpts[lm])
elif lm == 'xlnet':
self.bert = XLNetModel.from_pretrained(model_ckpts[lm])
elif lm == 'roberta':
self.bert = RobertaModel.from_pretrained(model_ckpts[lm])
elif lm == 'longformer':
self.bert = LongformerModel.from_pretrained(model_ckpts[lm])
else:
output_model_file = bert_path
model_state_dict = torch.load(output_model_file,
map_location=lambda storage, loc: storage)
if lm == 'bert':
self.bert = BertModel.from_pretrained(model_ckpts[lm],
state_dict=model_state_dict)
elif lm == 'distilbert':
self.bert = DistilBertModel.from_pretrained(model_ckpts[lm],
state_dict=model_state_dict)
elif lm == 'albert':
self.bert = AlbertModel.from_pretrained(model_ckpts[lm],
state_dict=model_state_dict)
elif lm == 'xlnet':
self.bert = XLNetModel.from_pretrained(model_ckpts[lm],
state_dict=model_state_dict)
elif lm == 'roberta':
self.bert = RobertaModel.from_pretrained(model_ckpts[lm],
state_dict=model_state_dict)
self.device = device
self.finetuning = finetuning
self.task_configs = task_configs
self.module_dict = nn.ModuleDict({})
self.lm = lm
# hard corded for now
hidden_size = 768
hidden_dropout_prob = 0.1
for config in task_configs:
name = config['name']
task_type = config['task_type']
vocab = config['vocab']
if task_type == 'tagging':
# for tagging
vocab_size = len(vocab) # 'O' and '<PAD>'
if 'O' not in vocab:
vocab_size += 1
if '<PAD>' not in vocab:
vocab_size += 1
else:
# for pairing and classification
vocab_size = len(vocab)
self.module_dict['%s_dropout' % name] = nn.Dropout(hidden_dropout_prob)
self.module_dict['%s_fc' % name] = nn.Linear(hidden_size, vocab_size)
attention_mask = torch.ones(input_ids.shape, dtype=torch.long,
device=input_ids.device) # TODO: use random word ID. #TODO: simulate masked word
global_attention_mask = torch.zeros(input_ids.shape, dtype=torch.long, device=input_ids.device)
if num_global_tokens > 0:
global_token_index = list(range(num_global_tokens))
global_attention_mask[:, global_token_index] = 1
# TODO: support more inputs like token_type_ids, position_ids
return input_ids, attention_mask, global_attention_mask
args = parse_arguments()
model_name = args.model
onnx_model_path = model_name + ".onnx"
from transformers import LongformerModel
model = LongformerModel.from_pretrained(MODELS[model_name]) # pretrained model name or directory
input_ids, attention_mask, global_attention_mask = get_dummy_inputs(sequence_length=args.sequence_length, num_global_tokens=args.global_length, device=torch.device('cpu'))
example_outputs = model(input_ids, attention_mask=attention_mask, global_attention_mask=global_attention_mask)
# A new function to replace LongformerSelfAttention.forward
#For transformers 4.0
def my_longformer_self_attention_forward_4(self, hidden_states, attention_mask=None, is_index_masked=None, is_index_global_attn=None, is_global_attn=None):
# TODO: move mask calculation to LongFormerModel class to avoid calculating it again and again in each layer.
global_mask = is_index_global_attn.int()
torch.masked_fill(attention_mask, is_index_global_attn, 0.0)
weight = torch.stack((self.query.weight.transpose(0,1), self.key.weight.transpose(0,1), self.value.weight.transpose(0,1)), dim=1)
weight = weight.reshape(self.embed_dim, 3*self.embed_dim)
def __init__(self, config):
super().__init__(config)
self.longformer = LongformerModel(config)
self.init_weights()
def test_layer_attn_probs(self):
model = LongformerModel.from_pretrained(
"patrickvonplaten/longformer-random-tiny")
model.eval()
layer = model.encoder.layer[0].attention.self.to(torch_device)
hidden_states = torch.cat(
[self._get_hidden_states(),
self._get_hidden_states() - 0.5],
dim=0)
batch_size, seq_length, hidden_size = hidden_states.size()
attention_mask = torch.zeros((batch_size, seq_length),
dtype=torch.float32,
device=torch_device)
# create attn mask
attention_mask[0, -2:] = 10000.0
attention_mask[0, -1:] = -10000.0
attention_mask[1, 1:] = 10000.0
is_index_masked = attention_mask < 0
is_index_global_attn = attention_mask > 0
is_global_attn = is_index_global_attn.flatten().any().item()
output_hidden_states, local_attentions, global_attentions = layer(
hidden_states,
attention_mask=attention_mask,
is_index_masked=is_index_masked,
is_index_global_attn=is_index_global_attn,
is_global_attn=is_global_attn,
output_attentions=True,
)
self.assertEqual(local_attentions.shape, (2, 4, 2, 8))
self.assertEqual(global_attentions.shape, (2, 2, 3, 4))
# All tokens with global attention have weight 0 in local attentions.
self.assertTrue(torch.all(local_attentions[0, 2:4, :, :] == 0))
self.assertTrue(torch.all(local_attentions[1, 1:4, :, :] == 0))
# The weight of all tokens with local attention must sum to 1.
self.assertTrue(
torch.all(
torch.abs(global_attentions[0, :, :2, :].sum(dim=-1) -
1) < 1e-6))
self.assertTrue(
torch.all(
torch.abs(global_attentions[1, :, :1, :].sum(dim=-1) -
1) < 1e-6))
self.assertTrue(
torch.allclose(
local_attentions[0, 0, 0, :],
torch.tensor(
[
0.3328, 0.0000, 0.0000, 0.0000, 0.0000, 0.3355, 0.3318,
0.0000
],
dtype=torch.float32,
device=torch_device,
),
atol=1e-3,
))
self.assertTrue(
torch.allclose(
local_attentions[1, 0, 0, :],
torch.tensor(
[
0.2492, 0.2502, 0.2502, 0.0000, 0.0000, 0.2505, 0.0000,
0.0000
],
dtype=torch.float32,
device=torch_device,
),
atol=1e-3,
))
# All the global attention weights must sum to 1.
self.assertTrue(
torch.all(torch.abs(global_attentions.sum(dim=-1) - 1) < 1e-6))
self.assertTrue(
torch.allclose(
global_attentions[0, 0, 1, :],
torch.tensor(
[0.2500, 0.2500, 0.2500, 0.2500],
dtype=torch.float32,
device=torch_device,
),
atol=1e-3,
))
self.assertTrue(
torch.allclose(
global_attentions[1, 0, 0, :],
torch.tensor(
[0.2497, 0.2500, 0.2499, 0.2504],
dtype=torch.float32,
device=torch_device,
),
atol=1e-3,
))
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.roberta = LongformerModel(config)
self.classifier = RobertaClassificationHead(config)
