def __init__(self, parent, controller):
super().__init__(parent, controller)
self.set_info_text("SelectWindow")
from_tables_frame = tk.Frame()
self.tables_checkbox = ttkwidgets.CheckboxTreeview(from_tables_frame)
self.tables_checkbox.pack(fill = tk.BOTH, expand = True)
for table in self.controller.parent.get_db().get_tables().get_one_column():
iid = self.tables_checkbox.insert("", tk.END, tags = (table, ), text = table, iid = table)
for table, field in self.controller.parent.get_db().get_fields().get_all_columns():
self.tables_checkbox.insert(table, tk.END, tags = (table, field), text = field)
self.add_page(from_tables_frame, text = help_text.HELP_TEXT["SELECT"]["Fields"], title = "Fields")
joins_frame = tk.Frame()
cols = ("Type", "Table", "On")
self.img_tick = tk.PhotoImage(file = os.path.join("assets", "tick.png"))
self.img_cross = tk.PhotoImage(file = os.path.join("assets", "cross.png"))
self.joins_table = ttk.Treeview(joins_frame, columns = cols, displaycolumns = cols)
self.joins_table.column("#0", width = 48, stretch = tk.NO)
for col in cols:
self.joins_table.heading(col, text = col)
self.joins_table.pack(fill = tk.BOTH, expand = True)
self.joins_table.bind("<Double-1>", self.onTreeClick)
self.add_page(joins_frame, text = help_text.HELP_TEXT["SELECT"]["Joins"], title = "Joins", onPageOpen = self.joins_page_selected)
def __init__(self, master, state, **kw) -> None:
super().__init__(master=master, **kw)
self.state = state
r = 0
## Upload button
b = ttk.Label(self, text="Your sequences")
b.grid(row=r, column=0, padx=10, pady=10, columnspan=3, sticky="news")
b = ttk.Label(self, text="Log")
b.grid(row=r, column=3, padx=10, pady=10, columnspan=3, sticky="news")
r += 1
## Upload menu
self.tree = ttkwidgets.CheckboxTreeview(self)
self.tree.grid(row=r,
column=0,
padx=10,
pady=10,
columnspan=3,
sticky="news")
rootpath = f"{self.state.mode.sequences}/personal"
for dirpath, dirnames, files in os.walk(rootpath):
parent = "" if dirpath == rootpath else dirpath[
dirpath.index(rootpath):].replace("\\", "/")
for d in dirnames:
self.tree.insert(parent, "end", f"{dirpath}/{d}", text=d)
for f in files:
iid = self.tree.insert(parent, "end", f"{dirpath}/{f}", text=f)
if not f.replace(".txt", "").replace("_", "").isdigit():
self.tree.change_state(iid, 'checked')
self.text = tk.Text(self)
self.text.grid(row=r,
column=3,
padx=10,
pady=10,
columnspan=3,
sticky="news")
r += 1
b = ttk.Button(self, text="Upload changes", command=self.upload)
b.grid(row=r, column=3, padx=10, pady=10, columnspan=1, sticky="news")
def __init__(self, parent, *args, **kwargs):
super().__init__(master=parent, bg='white', *args, **kwargs)
self.pack(side=tk.RIGHT, fill=tk.Y)
# buttons
self.button_toggle_check_automatically = tk.Button(master=self, text='Check new automatically.',
command=self.toggle_check_new_automatically,
relief='flat', overrelief='solid', bd=1,
bg='white', activebackground='white',
fg='black', activeforeground='black')
self.button_toggle_check_automatically.pack()
self._is_toggle_set_to_check_new_automatically = True
self.button_toggle_checkbuttons = tk.Button(master=self, text='Disable all. (toggle)',
command=self.toggle_all_checkbuttons,
relief='flat', overrelief='solid', bd=1,
bg='white', activebackground='white',
fg='black', activeforeground='black')
self.button_toggle_checkbuttons.pack()
self._is_toggle_set_to_disabled = True
self.button_toggle_collapse = tk.Button(master=self, text='Collapse all. (toggle)',
command=self.toggle_all_collapse,
relief='flat', overrelief='solid', bd=1,
bg='white', activebackground='white',
fg='black', activeforeground='black')
self.button_toggle_collapse.pack()
self._is_toggle_set_to_collapsed = True
# checkbutton tree
# https://github.com/RedFantom/ttkwidgets/blob/master/ttkwidgets/checkboxtreeview.py
# https://docs.python.org/3.6/library/tkinter.ttk.html#ttk-treeview
self._checkbutton_tree = ttkwidgets.CheckboxTreeview(master=self, show='tree') # only 'tree ' no 'headings'
self._checkbutton_tree.pack(side=tk.LEFT, fill=tk.Y)
# workaround for Windows/Microsoft to remove border --> https://stackoverflow.com/a/23690759/3108856
ttk.Style().layout('Treeview', [('Treeview.treearea', {'sticky': 'nswe'})])
self._checkbutton_tree.bind('<Button-1>', self._row_click, add=True) # add=True to trigger also
# internal event handling
# scrollbar
scrollbar = ttk.Scrollbar(master=self, orient="vertical", command=self._checkbutton_tree.yview)
self._checkbutton_tree.configure(yscrollcommand=scrollbar.set)
scrollbar.config(command=self._checkbutton_tree.yview)
scrollbar.pack(side=tk.RIGHT, fill=tk.Y)
def __init__(self, master):
self.master = master
self._queue_media = q.SimpleQueue()
self._tcounter_update = ThreadCounter()
self._executor_update = concurr.ThreadPoolExecutor()
self._tcounter_download = ThreadCounter()
self._executor_download = concurr.ThreadPoolExecutor()
self.map_media = {}
self.frame_view = ttk.Frame(self.master)
self.frame_control = ttk.Frame(self.master)
self.frame_add = ttk.Frame(self.frame_control)
self.frame_dir = ttk.Frame(self.frame_control)
self.style_progress = ttk.Style(self.master)
self.style_progress.layout(
'Horizontal.TProgressbar', [('Horizontal.Progressbar.trough', {
'children': [('Horizontal.Progressbar.pbar', {
'side': 'left',
'sticky': 'ns'
})],
'sticky':
'nswe'
}), ('Horizontal.Profressbar.label', {
'sticky': ''
})])
# widgets
# frame_setup
# frame_add - adding urls
self.button_clipboard = ttk.Button(self.frame_add,
text="Add from clipboard",
command=self.event_add)
self.var_check_audio = tk.StringVar()
self.var_check_audio.set(dl.Format.VIDEO)
self.check_audio = ttk.Checkbutton(self.frame_add,
text="Audio only (mp3)",
onvalue=dl.Format.AUDIO,
offvalue=dl.Format.VIDEO,
variable=self.var_check_audio,
command=self.event_check_audio)
# frame_dir - default directory
label_dir_default = ttk.Label(self.frame_dir,
text="Default directory:")
self.var_dir_default = tk.StringVar()
self.var_dir_default.set(
os.path.sep.join([os.path.expanduser('~'), "YouTube"]))
self.entry_dir_default = ttk.Entry(self.frame_dir,
textvariable=self.var_dir_default,
state=tk.DISABLED)
self.entry_dir_default.bind("<Double-1>", self.event_open_dir)
self.entry_dir_default.bind("<Button-4>", self.event_dir_scroll_up)
self.entry_dir_default.bind("<Button-5>", self.event_dir_scroll_down)
self.button_dir_default = ttk.Button(self.frame_dir,
text="...",
width=2,
command=self.event_dir_default)
self.var_check_subdir = tk.BooleanVar()
self.var_check_subdir.set(True)
self.check_subdir = ttk.Checkbutton(self.frame_dir,
text="Playlists in subfolders",
onvalue=True,
offvalue=False,
variable=self.var_check_subdir)
# no subframe
self.button_download = ttk.Button(self.frame_control,
text="Download selected",
command=self.event_download)
self.button_clear = ttk.Button(self.frame_control,
text="Clear",
width=5,
command=self.event_clear)
# frame_view
self.tree_media = ttkwidgets.CheckboxTreeview(
self.frame_view,
columns=self.Column.to_columns(),
selectmode='none')
self.tree_media.bind("<Button-1>", self.event_tree_click)
self.tree_media.bind("<Double-1>", self.event_tree_doubleclick)
self.tree_media.heading(self.Column.URL, text="URL ID")
self.tree_media.heading(self.Column.STATUS, text="Status")
self.tree_media.heading(self.Column.TITLE, text="Title")
self.tree_media.heading(self.Column.FORMAT, text="Format")
self.tree_media.heading(self.Column.DESTINATION, text="Destination")
self.tree_media.column(self.Column.URL,
minwidth=70,
width=130,
stretch=True)
self.tree_media.column(self.Column.STATUS,
minwidth=120,
width=150,
stretch=True)
self.tree_media.column(self.Column.TITLE,
width=300,
minwidth=100,
stretch=True)
self.tree_media.column(self.Column.FORMAT,
anchor="center",
minwidth=100,
width=100,
stretch=False)
self.tree_media.column(self.Column.DESTINATION,
minwidth=100,
stretch=True)
self.progress_info = ttk.Progressbar(self.frame_view, maximum=0)
# layout settings
# mainframe
self.master.grid_columnconfigure(0, weight=1)
self.master.grid_rowconfigure(0, weight=1)
self.frame_view.grid(row=0, column=0, sticky="nswe", padx=15, pady=5)
self.frame_control.grid(row=0, column=1, sticky="ns", padx=5, pady=10)
# frame_view
self.frame_view.grid_columnconfigure(0, weight=1)
self.frame_view.grid_rowconfigure(0, weight=1)
self.tree_media.grid(sticky="nswe", pady=5)
self.progress_info.grid(row=1, column=0, sticky="we", pady=7)
# frame_control
self.frame_dir.grid(row=0,
column=0,
columnspan=2,
sticky="nwe",
padx=10,
pady=10)
self.frame_add.grid(row=1,
column=0,
columnspan=2,
sticky="we",
padx=10,
pady=10)
self.button_download.grid(row=2,
column=0,
sticky="ws",
pady=15,
padx=10)
self.button_clear.grid(row=2, column=1, sticky='se', pady=15, padx=10)
# frame_dir
label_dir_default.grid(row=0,
column=0,
columnspan=2,
sticky='swe',
pady=5)
self.entry_dir_default.grid(row=1, column=0, sticky='nwe', ipady=3)
self.button_dir_default.grid(row=1, column=1, sticky='e', padx=5)
self.check_subdir.grid(row=2,
column=0,
columnspan=2,
sticky='nw',
pady=5)
# frame_add
self.button_clipboard.pack(fill='x')
self.check_audio.pack(fill='x', pady=5)
# window
self.image_icon = Image.open('assets' + os.sep + '/Youtube-icon.ico')
self.imagetk_icon = ImageTk.PhotoImage(
self.image_icon.resize((100, 100)))
self.master.iconphoto(False, self.imagetk_icon)
self.master.title("YouTube downloader")
self.master.update()
w_max = self.master.winfo_screenwidth()
w_opt = self.master.winfo_width()
h_max = self.master.winfo_screenheight()
h_opt = self.master.winfo_height()
w_min = min(w_max, w_opt - 350)
h_min = min(h_max, h_opt)
w_out = min(w_opt, w_max)
h_out = h_min
pos_x = int((w_max - w_out) / 2)
pos_y = int((h_max - h_out) / 5)
self.master.geometry(f"{w_out}x{h_out}+{pos_x}+{pos_y}")
self.master.minsize(w_min, h_min)
def troisieme_fenetrefunc():
troisieme_fenetre = tk.Frame()
labelresultat = tk.Label(troisieme_fenetre, text='Resultat').grid()
matrice = parsehmmsearch()
tree = ttkwidgets.CheckboxTreeview(troisieme_fenetre)
tree['columns'] = ('one', 'two', 'three', 'four', 'five', 'six', '7', '8',
'9', '10', '11', '12', '13')
#tailles colonnes
tree.column("#0", width=50)
tree.column("one", width=100)
tree.column("two", width=100)
tree.column("three", width=100)
tree.column('four', width=100)
tree.column('five', width=100)
tree.column('six', width=100)
tree.column('7', width=100)
tree.column('8', width=100)
tree.column('9', width=100)
tree.column('10', width=100)
tree.column('11', width=100)
tree.column('12', width=100)
tree.column('13', width=100)
#nom colonnes
tree.heading('#0', text='select')
tree.heading('one', text='target')
tree.heading('two', text='tlen')
tree.heading('three', text='query')
tree.heading('four', text='qlen')
tree.heading('five', text='evalue')
tree.heading('six', text='score')
tree.heading('7', text='#')
tree.heading('8', text='of')
tree.heading('9', text='c-evalue')
tree.heading('10', text='hmm from')
tree.heading('11', text='hmm to')
tree.heading('12', text='ali to')
tree.heading('13', text='ali from')
j = 0
for i in matrice:
j += 1
tree.insert('',
j,
text='',
values=(i[0], i[2], i[3], i[5], i[6], i[7], i[9], i[10],
i[11], i[15], i[16], i[17], i[18]))
# tree["columns"]= [i for i in range(len(dataframe.columns.values[1:]))]
# for i in range(len(dataframe.columns.values[1:])):
# tree.heading(i,text=dataframe.columns.values[i],anchor=tk.W)
# tree.column(i,width=100)
# for i in dataframe.iterrows():
# for j in range(2):
# tree.insert('','end',values=(i[j]))
#configuration
def popup():
tk.messagebox.showinfo(title='coucou',
message='{0}'.format(tree.get_checked()))
send_check = tk.Button(troisieme_fenetre,
text='Ajouter a la base de donnee',
command=popup)
tree.grid()
send_check.grid()
troisieme_fenetre.grid(row=0, column=1, sticky='news')
troisieme_fenetre.grid_rowconfigure(0, pad=50)
def __init__(self, parent, controller):
ttk.Frame.__init__(self, parent)
self.controller = controller
self.edit_mode = False
self.event_id = None
self.error_text = StringVar()
title = ttk.Label(self, text="Create event", font=("TkDefaultFont", "15"))
error_label = ttk.Label(self, textvariable=self.error_text, font=("TkDefaultFont", "7"))
error_label.configure(style="Red.TLabel")
buttons_frame = ttk.Frame(self)
back_button = ttk.Button(buttons_frame, text='Back', command=partial(self.controller.show_frame, "EventsPage"))
# And of course, the button to save it all
save_button = ttk.Button(buttons_frame, text="Save", command=self.save)
# Event form
self.name = StringVar()
name_label = ttk.Label(self, text="Name")
self.name_entry = ttk.Entry(self, textvariable=self.name)
# Variables to get the values after input
self.begin_text = StringVar()
self.hour_text = StringVar()
self.running_time_text = StringVar()
self.hour_text.set('12')
self.running_time_text.set('60')
# Input for the date of the event
begin = ttk.Label(self, text="Day")
begin_entry = EntryDate(self, textvariable=self.begin_text)
# Input for the hour of the event
hour = ttk.Label(self, text="Hour")
hour_entry = Spinbox(self, from_=0, to=24, textvariable=self.hour_text)
# Input for the running time, in minutes
# TODO actually we can type anything in this widget
# do something to prevent that by using regex
# When clicking on the save button, there may be a label
# if the input is wrong
running_time = ttk.Label(self, text="Running time (minutes)")
running_time_entry = Spinbox(self, from_=0, to=500, textvariable=self.running_time_text)
# Dropdown list for the type of the projection (film, docu)
pj_label = ttk.Label(self, text="Projection type")
self.projection_type_choosen = StringVar()
projection_types = ttk.Combobox(self, textvariable=self.projection_type_choosen, state='readonly')
projection_types['values'] = ["Film", "Documentary"]
projection_types.current(0)
pjs = [pj['location'] for pj in controller.get_projection_rooms().dicts()]
# Dropdown list for the location of the event
pr_label = ttk.Label(self, text="Projection room")
self.projection_room_choosen = StringVar()
projection_rooms = ttk.Combobox(self, textvariable=self.projection_room_choosen, state='readonly')
projection_rooms['values'] = pjs
projection_rooms.current(0)
# Inputs for the event's status to go 'finished'
self.room_reserved = IntVar()
self.management = IntVar()
self.equipment_reserved = IntVar()
self.guest_attendance = IntVar()
check_frame = ttk.Frame(self)
room_chbutton = ttk.Checkbutton(check_frame, text="Room reserved", variable=self.room_reserved)
equipment_chbutton = ttk.Checkbutton(check_frame, text="Equipment reserved", variable=self.equipment_reserved)
management_chbutton = ttk.Checkbutton(check_frame, text="Management reserved", variable=self.management)
guest_attendance_chbutton = ttk.Checkbutton(check_frame, text="Guest attendance confirmed", variable=self.guest_attendance)
members_frame = ttk.Frame(self)
members_label = ttk.Label(self, text="Add members")
members_scrollbar = ttk.Scrollbar(members_frame, orient=VERTICAL)
# List of users; the manager has to choose among them
# members that'll participate in the event's organisation
self.members_tree = tkw.CheckboxTreeview(members_frame, columns=('Events'), selectmode='browse', yscrollcommand=members_scrollbar.set)
members_scrollbar.configure(command=self.members_tree.yview)
self.members_tree.column("Events", anchor='center')
self.members_tree.heading("#0", text="Name")
self.members_tree.heading("Events", text="Events")
self.members_tree.tag_configure('odd', background="#F0F0F0")
self.members_tree.tag_configure('even', background="#FAFAFA")
tkw.frames.Balloon(self.members_tree, text='Double click on users to see their timetable')
self.members_tree.bind('<Double-1>', self.timetable)
self.display_members(event_id=None)
# CATEGORIES
categories_label = ttk.Label(self, text="Add categories")
cats_frame = ttk.Frame(self)
cats_scrollbar = ttk.Scrollbar(cats_frame, orient=VERTICAL)
self.cats_tree = tkw.CheckboxTreeview(cats_frame, columns=('Price'), selectmode='none')
cats_scrollbar.configure(command=self.cats_tree.yview)
self.cats_tree.column("#0", width=140)
self.cats_tree.column("Price", anchor='center')
self.cats_tree.heading("#0", text="Title")
self.cats_tree.heading("Price", text="Price")
self.cats_tree.tag_configure('odd', background="#F0F0F0")
self.cats_tree.tag_configure('even', background="#FAFAFA")
self.display_categories(event_id=None)
# PRESENTATION
self.presentation = IntVar()
self.author = StringVar()
self.context = StringVar()
presentation_frame = ttk.Frame(self)
presentation_check = ttk.Checkbutton(presentation_frame,
text="Author presentation",
variable=self.presentation)
# DEBATE
self.debate = IntVar()
self.speaker = StringVar()
self.contact_details = StringVar()
debate_frame = ttk.Frame(self)
debate_check = ttk.Checkbutton(debate_frame,
text="Debate",
variable=self.debate)
# Placing the components
# ROW 0
title.grid(row=0, column=0, sticky=(W+N))
error_label.grid(row=0, column=1, sticky=W+N+S, columnspan=3, padx=(10, 0))
buttons_frame.grid(row=0, column=5, sticky=E)
back_button.grid(row=0, column=2, pady=5, padx=5, sticky=E)
save_button.grid(row=0, column=3, pady=5, padx=5, sticky=E)
# ROW 1
name_label.grid(row=1, column=0, sticky=W, pady=5, padx=5)
self.name_entry.grid(row=1, column=1, pady=5, padx=5, sticky=E)
running_time.grid(row=1, column=2, pady=5, padx=5, sticky=W)
running_time_entry.grid(row=1, column=3, pady=5, padx=5, sticky=E)
# ROW 2
begin.grid(row=2, column=0, sticky=W, pady=5, padx=5)
begin_entry.grid(row=2, column=1, sticky=E, pady=5, padx=5)
hour.grid(row=2, column=2, sticky=W, pady=5, padx=5)
hour_entry.grid(row=2, column=3, sticky=E, pady=5, padx=5)
# ROW 3
pj_label.grid(row=3, column=0, sticky=W, pady=5, padx=5)
projection_types.grid(row=3, column=1, sticky=E, pady=5, padx=5)
pr_label.grid(row=3, column=2, pady=5, sticky=W, padx=5)
projection_rooms.grid(row=3, column=3, sticky=E, pady=5, padx=5)
# ROW 0 RIGHT SIDE
presentation_frame.grid(row=1, column=4, sticky=NSEW, columnspan=2, rowspan=2, pady=5, padx=5)
presentation_check.grid(row=0, column=0, sticky=W)
# ROW 3 RIGHT SIDE
debate_frame.grid(row=3, column=4, sticky=NSEW, rowspan=2, columnspan=2, pady=5, padx=5)
debate_check.grid(row=0, column=0, sticky=W)
# ROW 5 RIGHT SIDE
check_frame.grid(row=5, column=4, rowspan=2, columnspan=2, sticky=N+W, pady=5, padx=5)
room_chbutton.grid(row=4, column=2, sticky=W)
equipment_chbutton.grid(row=5, column=2, sticky=W)
management_chbutton.grid(row=6, column=2, sticky=W)
guest_attendance_chbutton.grid(row=7, column=2, sticky=W)
# ROW 6
members_frame.grid(row=5, column=0, columnspan=2, pady=5, padx=5, sticky=NSEW)
members_label.grid(row=4, column=0, pady=5, padx=5, sticky=W)
self.members_tree.pack(side=LEFT)
members_scrollbar.pack()
categories_label.grid(row=4, column=2, pady=5, padx=5, sticky=W)
cats_frame.grid(row=5, column=2, columnspan=2, pady=5, padx=5, sticky=NSEW)
self.cats_tree.pack(side=LEFT, expand=True)
cats_scrollbar.pack()
def update_tree(self):
'''Efface l'ancien tableau et le reconstruit en appliquant
les conditions : evalue max et recouvrement mini'''
#verifie que la evalue est sous le bon format sinon retourne un message d'erreur
try:
evalue = float(self.filtre_evalue.get())
except ValueError:
tk.messagebox.showerror(
title='Erreur',
message=
'La evalue doit etre un reel \nEcriture scientifique accepté sous la forme 1e-N'
)
return False
recouvrement = int(self.recouvrement.get())
#Oublie l'ancien tableau et recreer le avec les conditions
self.tree.grid_forget()
self.tree = ttkwidgets.CheckboxTreeview(self, height=20)
self.tree['columns'] = ('target', 'tlen', 'query', 'qlen', 'evalue',
'score', '#', 'of', 'c-evalue', 'hmm from',
'hmm to', 'ali from', 'ali to')
#tailles colonnes
self.tree.column("#0", width=50)
self.tree.column("target", width=130, anchor=tk.CENTER)
self.tree.column("tlen", width=50, anchor=tk.CENTER)
self.tree.column("query", width=150, anchor=tk.CENTER)
self.tree.column('qlen', width=50, anchor=tk.CENTER)
self.tree.column('evalue', width=100, anchor=tk.CENTER)
self.tree.column('score', width=100, anchor=tk.CENTER)
self.tree.column('#', width=25, anchor=tk.CENTER)
self.tree.column('of', width=25, anchor=tk.CENTER)
self.tree.column('c-evalue', width=100, anchor=tk.CENTER)
self.tree.column('hmm from', width=100, anchor=tk.CENTER)
self.tree.column('hmm to', width=100, anchor=tk.CENTER)
self.tree.column('ali from', width=100, anchor=tk.CENTER)
self.tree.column('ali to', width=100, anchor=tk.CENTER)
#nom colonnes
for col in self.tree['columns']:
self.tree.heading(
col,
text=col,
command=lambda _col=col: self.tree_sort_column(_col, False))
#Pour chaque ligne du domtblout, les inseres si elles respectent les
#conditions donnees
j = 0
passe_selection = 0
self.index_indices = {}
if self.matrice[0] == 'hmmsearch':
for i in self.matrice[1:]:
j += 1
if float(i[6]) <= evalue:
if int(recouvrement) <= (int(i[16]) - int(i[15]) +
1) / int(i[5]) * 100:
indice = self.tree.insert(
'',
j,
text='',
values=(i[0], i[2], i[3], i[5], i[6], i[7], i[9],
i[10], i[11], i[15], i[16], i[17], i[18]))
self.index_indices[indice] = (i[0], i[2], i[3], i[5],
i[6], i[7], i[9], i[10],
i[11], i[15], i[16],
i[17], i[18])
passe_selection += 1
else:
for i in self.matrice[1:]:
j += 1
if float(i[6]) <= evalue:
if int(recouvrement) <= (int(i[16]) - int(i[15]) +
1) / int(i[2]) * 100:
indice = self.tree.insert(
'',
j,
text='',
values=(i[0], i[2], i[3], i[5], i[6], i[7], i[9],
i[10], i[11], i[15], i[16], i[17], i[18]))
self.index_indices[indice] = (i[0], i[2], i[3], i[5],
i[6], i[7], i[9], i[10],
i[11], i[15], i[16],
i[17], i[18])
passe_selection += 1
#Met a jour le label indiquant le nombre de resultat
self.labelresultat.grid_forget()
self.labelresultat = ttk.Label(
self,
text='Résultats trouvés : {0}, après filtrage : {1}'.format(
len(self.matrice) - 1, passe_selection))
self.labelresultat.grid(row=1, columnspan=3, pady=20)
#Bouton d'ajout a la DB
self.send_check = ttk.Button(self,
text='Ajouter a la base de donnee',
command=self.add_to_DB)
self.send_check.grid(row=6, column=1)
self.tree.grid(row=2, columnspan=3)
def __init__(self, master, result_file):
ttk.Frame.__init__(self, master)
self.master = master
self.result_file = result_file
#stock dans matrice les resultats parsé (une ligne -> une liste)
self.matrice = self.parsehmmer()
self.labelresultat = ttk.Label(
self, text='Resultat trouvé : {}'.format(len(self.matrice) - 1))
#Creer un tableau des resultats
self.tree = ttkwidgets.CheckboxTreeview(self, height=20)
self.tree['columns'] = ('target', 'tlen', 'query', 'qlen', 'evalue',
'score', '#', 'of', 'c-evalue', 'hmm from',
'hmm to', 'ali from', 'ali to')
#tailles colonnes
self.tree.column("#0", width=50)
self.tree.column("target", width=130, anchor=tk.CENTER)
self.tree.column("tlen", width=50, anchor=tk.CENTER)
self.tree.column("query", width=150, anchor=tk.CENTER)
self.tree.column('qlen', width=50, anchor=tk.CENTER)
self.tree.column('evalue', width=100, anchor=tk.CENTER)
self.tree.column('score', width=100, anchor=tk.CENTER)
self.tree.column('#', width=25, anchor=tk.CENTER)
self.tree.column('of', width=25, anchor=tk.CENTER)
self.tree.column('c-evalue', width=100, anchor=tk.CENTER)
self.tree.column('hmm from', width=100, anchor=tk.CENTER)
self.tree.column('hmm to', width=100, anchor=tk.CENTER)
self.tree.column('ali from', width=100, anchor=tk.CENTER)
self.tree.column('ali to', width=100, anchor=tk.CENTER)
#nom colonnes
for col in self.tree['columns']:
self.tree.heading(
col,
text=col,
command=lambda _col=col: self.tree_sort_column(_col, False))
j = 0
#dictionnaire pour associer les elements de la matrice avec les checkbox
self.index_indices = {}
#Insere toutes les lignes du domtblout
for i in self.matrice[1:]:
indice = self.tree.insert('',
j,
text='',
values=(i[0], int(i[2]), i[3], int(i[5]),
float(i[6]), float(i[7]),
int(i[9]), int(i[10]),
float(i[11]), int(i[15]),
int(i[16]), int(i[17]),
int(i[18])))
self.index_indices[indice] = (i[0], i[2], i[3], i[5], i[6], i[7],
i[9], i[10], i[11], i[15], i[16],
i[17], i[18])
j += 1
self.tree.grid(row=2, columnspan=3)
self.filtre_label = ttk.Label(self, text='').grid(row=3)
#Choix evalue
self.filtre_evalue_label = ttk.Label(
self, text='e-value inférieur à :').grid(row=4, column=0)
self.filtre_evalue = tk.StringVar()
self.filtre_evalue_entry = ttk.Entry(self,
textvariable=self.filtre_evalue,
width=10,
justify='center')
self.filtre_evalue_entry.insert(0, '10')
self.filtre_evalue_entry.grid(row=5, column=0)
#Choix recouvrement
self.filtre_recouvrement_label = ttk.Label(
self, text='% recouvrement min :').grid(row=4, column=1)
self.recouvrement = ttkwidgets.TickScale(self,
from_=0,
to=100,
orient='horizontal',
resolution=1,
length=200)
#bouton de mise a jour
self.majbutton = ttk.Button(self,
text='Mettre à jour',
command=self.update_tree).grid(row=5,
column=2)
#Bouton d'ajout a la DB
self.send_check = ttk.Button(self,
text='Ajouter a la base de donnee',
command=self.add_to_DB)
#Bouton retour recherche
self.NouvelleRecherche = ttk.Button(self,
text='Nouvelle recherche',
command=self.fenetre_recherche)
#bouton retour accueil
self.Accueil = ttk.Button(self,
text='Retour accueil',
command=self.fenetre_accueil)
#Configuration du layout
self.labelresultat.grid(row=1, columnspan=3, pady=20)
self.recouvrement.grid(row=5, column=1)
self.send_check.grid(row=6, column=1)
self.NouvelleRecherche.grid(row=6, column=2)
self.Accueil.grid(row=6, column=0)
self.grid(row=0, column=1, sticky='news')
self.grid_rowconfigure(0, pad=50)
self.grid_rowconfigure(6, pad=50)
self.grid()
def update_tree(matrice, evalue, recouvrement, tree, labelresultat, frame):
'''Efface l'ancien tableau et le reconstruit en appliquant
les conditions : evalue max et recouvrement mini'''
#verifie que la evalue est sous le bon format sinon retourne un message d'erreur
try:
evalue = float(evalue)
except ValueError:
tk.messagebox.showerror(
title='Erreur',
message=
'La evalue doit etre un reel \nEcriture scientifique accepté sous la forme 1e-N'
)
return False
recouvrement = int(recouvrement)
#Oublie l'ancien tableau et recreer le avec les conditions
tree.grid_forget()
tree = ttkwidgets.CheckboxTreeview(frame, height=20)
tree['columns'] = ('one', 'two', 'three', 'four', 'five', 'six', '7', '8',
'9', '10', '11', '12', '13')
#tailles colonnes
tree.column("#0", width=50, anchor=tk.CENTER)
tree.column("one", width=130, anchor=tk.CENTER)
tree.column("two", width=50, anchor=tk.CENTER)
tree.column("three", width=150, anchor=tk.CENTER)
tree.column('four', width=50, anchor=tk.CENTER)
tree.column('five', width=100, anchor=tk.CENTER)
tree.column('six', width=100, anchor=tk.CENTER)
tree.column('7', width=20, anchor=tk.CENTER)
tree.column('8', width=20, anchor=tk.CENTER)
tree.column('9', width=100, anchor=tk.CENTER)
tree.column('10', width=100, anchor=tk.CENTER)
tree.column('11', width=100, anchor=tk.CENTER)
tree.column('12', width=100, anchor=tk.CENTER)
tree.column('13', width=100, anchor=tk.CENTER)
#nom colonnes
tree.heading('#0', text='select')
tree.heading('one', text='target')
tree.heading('two', text='tlen')
tree.heading('three', text='query')
tree.heading('four', text='qlen')
tree.heading('five', text='evalue')
tree.heading('six', text='score')
tree.heading('7', text='#')
tree.heading('8', text='of')
tree.heading('9', text='c-evalue')
tree.heading('10', text='hmm from')
tree.heading('11', text='hmm to')
tree.heading('12', text='ali to')
tree.heading('13', text='ali from')
#Pour chaque ligne du domtblout, les inseres si elles respectent les
#conditions donnees
j = 0
passe_selection = 0
index_indices = {}
for i in matrice:
j += 1
if float(i[6]) <= evalue:
if int(recouvrement) <= (int(i[16]) - int(i[15])) / int(
i[5]) * 100:
indice = tree.insert('',
j,
text='',
values=(i[0], i[2], i[3], i[5], i[6],
i[7], i[9], i[10], i[11], i[15],
i[16], i[17], i[18]))
index_indices[indice] = (i[0], i[2], i[3], i[5], i[6], i[7],
i[9], i[10], i[11], i[15], i[16],
i[17], i[18])
passe_selection += 1
#Met a jour le label indiquant le nombre de resultat
labelresultat.grid_forget()
labelresultat = ttk.Label(
frame,
text='Résultats trouvés : {0}, après filtrage : {1}'.format(
len(matrice), passe_selection))
labelresultat.grid(row=1, columnspan=3, pady=20)
#Bouton d'ajout a la DB
send_check = ttk.Button(frame,
text='Ajouter a la base de donnee',
command=lambda: add_to_DB(tree, index_indices))
send_check.grid(row=6, column=1)
tree.grid(row=2, columnspan=3)
def troisieme_fenetrefunc(file):
'''Fenetre affichant les resultats sous la forme d'un tableau '''
troisieme_fenetre = ttk.Frame()
#stock dans matrice les resultats parsé (une ligne -> une liste)
matrice = parsehmmsearch(troisieme_fenetre, file)
labelresultat = ttk.Label(troisieme_fenetre,
text='Resultat trouvé : {}'.format(len(matrice)))
#Creer un tableau des resultats
tree = ttkwidgets.CheckboxTreeview(troisieme_fenetre, height=20)
tree['columns'] = ('one', 'two', 'three', 'four', 'five', 'six', '7', '8',
'9', '10', '11', '12', '13')
#tailles colonnes
tree.column("#0", width=50)
tree.column("one", width=130, anchor=tk.CENTER)
tree.column("two", width=50, anchor=tk.CENTER)
tree.column("three", width=150, anchor=tk.CENTER)
tree.column('four', width=50, anchor=tk.CENTER)
tree.column('five', width=100, anchor=tk.CENTER)
tree.column('six', width=100, anchor=tk.CENTER)
tree.column('7', width=20, anchor=tk.CENTER)
tree.column('8', width=20, anchor=tk.CENTER)
tree.column('9', width=100, anchor=tk.CENTER)
tree.column('10', width=100, anchor=tk.CENTER)
tree.column('11', width=100, anchor=tk.CENTER)
tree.column('12', width=100, anchor=tk.CENTER)
tree.column('13', width=100, anchor=tk.CENTER)
#nom colonnes
tree.heading('#0', text='')
tree.heading('one', text='target')
tree.heading('two', text='tlen')
tree.heading('three', text='query')
tree.heading('four', text='qlen')
tree.heading('five', text='evalue')
tree.heading('six', text='score')
tree.heading('7', text='#')
tree.heading('8', text='of')
tree.heading('9', text='c-evalue')
tree.heading('10', text='hmm from')
tree.heading('11', text='hmm to')
tree.heading('12', text='ali to')
tree.heading('13', text='ali from')
j = 0
#dictionnaire pour associer les elements de la matrice avec les checkbox
index_indices = {}
#Insere toutes les lignes du domtblout
for i in matrice:
indice = tree.insert('',
j,
text='',
values=(i[0], i[2], i[3], i[5], i[6], i[7], i[9],
i[10], i[11], i[15], i[16], i[17], i[18]))
index_indices[indice] = (i[0], i[2], i[3], i[5], i[6], i[7], i[9],
i[10], i[11], i[15], i[16], i[17], i[18])
j += 1
tree.grid(row=2, columnspan=3)
filtre_label = ttk.Label(troisieme_fenetre, text='').grid(row=3)
#Choix evalue
filtre_evalue_label = ttk.Label(troisieme_fenetre,
text='e-value inférieur à :').grid(
row=4, column=0)
filtre_evalue = tk.StringVar()
filtre_evalue_entry = ttk.Entry(troisieme_fenetre,
textvariable=filtre_evalue,
width=10,
justify='center')
filtre_evalue_entry.insert(0, '10')
filtre_evalue_entry.grid(row=5, column=0)
#Choix recouvrement
filtre_recouvrement_label = ttk.Label(troisieme_fenetre,
text='% recouvrement min :').grid(
row=4, column=1)
recouvrement = ttkwidgets.TickScale(troisieme_fenetre,
from_=0,
to=100,
orient='horizontal',
resolution=1,
length=200)
#bouton de mise a jour
majbutton = ttk.Button(
troisieme_fenetre,
text='Mettre à jour',
command=lambda: update_tree(matrice, filtre_evalue.get(
), recouvrement.get(), tree, labelresultat, troisieme_fenetre)).grid(
row=5, column=2)
ttk.Label(troisieme_fenetre).grid()
#Bouton d'ajout a la DB
send_check = ttk.Button(troisieme_fenetre,
text='Ajouter a la base de donnee',
command=lambda: add_to_DB(tree, index_indices))
#Bouton retour recherche
NouvelleRecherche = ttk.Button(
troisieme_fenetre,
text='Nouvelle recherche',
command=lambda: retour_recherche(troisieme_fenetre))
#bouton retour accueil
Accueil = ttk.Button(troisieme_fenetre,
text='Retour accueil',
command=lambda: retour_accueil(troisieme_fenetre))
#Configuration du layout
labelresultat.grid(row=1, columnspan=3, pady=20)
recouvrement.grid(row=5, column=1)
send_check.grid(row=6, column=1)
NouvelleRecherche.grid(row=6, column=2)
Accueil.grid(row=6, column=0)
ttk.Label(troisieme_fenetre).grid()
troisieme_fenetre.grid(row=0, column=1, sticky='news')
troisieme_fenetre.grid_rowconfigure(0, pad=50)
troisieme_fenetre.grid_rowconfigure(6, pad=50)
def create_fusion():
global domains_filename
domains_filename = tk.filedialog.askopenfilename(
initialdir="/",
title="Select Domains file",
filetypes=(("txt files", "*.txt"), ("all files", "*.*")))
secondary_structure_filename = tk.filedialog.askopenfilename(
initialdir="/",
title="Select Secondary Structure file",
filetypes=(("txt files", "*.txt"), ("all files", "*.*")))
if secondary_structure_filename != "" and domains_filename != "":
if is_domain_file(domains_filename) and is_structure_file(
secondary_structure_filename):
for x in tab3.grid_slaves():
if int(x.grid_info()["row"]) > 1:
x.grid_forget()
global target_cuts
global protein_len
target_cuts, protein_len, target_domain = fusion(
domains_filename, secondary_structure_filename)
Heading = ttk.Label(tab3,
text="Target Domains",
font=('Calibri', '12', 'bold'))
Heading.grid(row=4, column=5, padx=15, pady=10)
Domain = ttk.Label(tab3,
text="Name",
font=('Calibri', '10', 'bold'),
foreground=StColors.dark_grey)
Domain.grid(row=4, column=7, columnspan=2, padx=15, pady=10)
Start = ttk.Label(tab3,
text="Start",
font=('Calibri', '10', 'bold'),
foreground=StColors.dark_grey)
Start.grid(row=4, column=10, columnspan=2, padx=15, pady=10)
End = ttk.Label(tab3,
text="End",
font=('Calibri', '10', 'bold'),
foreground=StColors.dark_grey)
End.grid(row=4, column=12, columnspan=2, padx=15, pady=10)
for i in range(len(target_domain)):
Domain = ttk.Label(tab3,
text=target_domain[i][2],
font=('Calibri', '10'),
foreground=StColors.dark_grey)
Domain.grid(row=5 + i, column=7, columnspan=2)
Start = ttk.Label(tab3,
text=target_domain[i][0],
font=('Calibri', '10'),
foreground=StColors.dark_grey)
Start.grid(row=5 + i, column=10, columnspan=2)
End = ttk.Label(tab3,
text=target_domain[i][1],
font=('Calibri', '10'),
foreground=StColors.dark_grey)
End.grid(row=5 + i, column=12, columnspan=2)
global nextrow
nextrow = 5 + i
EmptyRow = ttk.Label(tab3)
EmptyRow.grid(row=nextrow, column=0, padx=15, pady=0)
Cutting_Headling = ttk.Label(tab3,
text="Available Cutting Location",
font=('Calibri', '12', 'bold'))
Cutting_Headling.grid(row=nextrow + 1,
column=5,
columnspan=2,
padx=15,
pady=10)
Pyocin_Domains_Headling = ttk.Label(tab3,
text="Pyocin:",
font=('Calibri', '12', 'bold'))
Pyocin_Domains_Headling.grid(row=nextrow + 2,
column=5,
padx=15,
pady=10)
global Pyocin_Domains_Table
global Target_Domains_Table
Pyocin_Domains_Table = ttkwidgets.CheckboxTreeview(tab3)
for cut in pyocin_cuts:
Pyocin_Domains_Table.insert("",
"end",
text=str(cut[0]) + '-' +
str(cut[1]))
Pyocin_Domains_Table.grid(row=nextrow + 3, column=5)
Target_Domains_Headling = ttk.Label(tab3,
text="Target:",
font=('Calibri', '12', 'bold'))
Target_Domains_Headling.grid(row=nextrow + 2,
column=8,
padx=15,
pady=10)
Target_Domains_Table = ttkwidgets.CheckboxTreeview(tab3)
for cut in target_cuts:
Target_Domains_Table.insert("",
"end",
text=str(cut[0]) + '-' +
str(cut[1]))
Target_Domains_Table.grid(row=nextrow + 3, column=8)
ysb = ttk.Scrollbar(tab3,
orient='vertical',
command=Pyocin_Domains_Table.yview)
ysb.grid(row=nextrow + 3, column=6, sticky='ns')
Pyocin_Domains_Table.configure(yscroll=ysb.set)
ysb = ttk.Scrollbar(tab3,
orient='vertical',
command=Target_Domains_Table.yview)
ysb.grid(row=nextrow + 3, column=9, sticky='ns')
Target_Domains_Table.configure(yscroll=ysb.set)
EmptyRow = ttk.Label(tab3)
EmptyRow.grid(row=nextrow + 4, column=0, padx=15, pady=0)
Continue_Label = ttk.Label(
tab3,
text=
"Please choose cutting location for the Pyocin and the target")
Continue_Label.grid(row=nextrow + 5,
column=5,
columnspan=4,
padx=15,
pady=0)
NewSearchButton = ttk.Button(tab3,
text='New Search',
command=new_search)
ExportButton = ttk.Button(tab3,
text='Get the Sequence',
command=create_fusion_sequence)
EmptyRow = ttk.Label(tab3)
EmptyRow.grid(row=nextrow + 6, column=0, padx=15, pady=0)
NewSearchButton.grid(row=0, column=12)
ExportButton.grid(row=nextrow + 5, column=11)
else:
EmptyRow = ttk.Label(tab3)
EmptyRow.grid(row=5, column=0, padx=15, pady=0)
ErrorFiles = ttk.Label(
tab3,
text=
'Please Load Domains file first and Secondary Structure file second'
)
ErrorFiles.grid(row=7, column=5, columnspan=5)
else:
EmptyRow = ttk.Label(tab3)
EmptyRow.grid(row=5, column=0, padx=15, pady=0)
ErrorFiles = ttk.Label(tab3, text='Please Load all files!')
ErrorFiles.grid(row=7, column=5, columnspan=5)
