from tvb.datatypes.time_series import TimeSeriesRegion
from tvb.datatypes.spectral import FourierSpectrum
LOG = get_logger(__name__)
## Before starting this, we need to have TVB web interface launched at least once (to have a default project, user, etc)
if __name__ == "__main__":
flow_service = FlowService()
operation_service = OperationService()
## This ID of a project needs to exists in DB, and it can be taken from the WebInterface:
project = dao.get_project_by_id(1)
## Prepare the Adapter
adapter_instance = ABCAdapter.prepare_adapter(FourierAdapter)
## Prepare the input algorithms as if they were coming from web UI submit:
time_series = dao.get_generic_entity(TimeSeriesRegion,
DataTypeMetaData.DEFAULT_SUBJECT,
"subject")
if len(time_series) < 1:
LOG.error("We could not find a compatible TimeSeries Datatype!")
launch_args = {"time_series": time_series[0].gid}
## launch an operation and have the results stored both in DB and on disk
launched_operation = flow_service.fire_operation(adapter_instance,
project.administrator,
project.id,
**launch_args)[0]
LOG = get_logger(__name__)
## Before starting this, we need to have TVB web interface launched at least once (to have a default project, user, etc)
if __name__ == "__main__":
flow_service = FlowService()
operation_service = OperationService()
## This ID of a project needs to exists in DB, and it can be taken from the WebInterface:
project = dao.get_project_by_id(1)
## Prepare the Adapter
adapter_instance = ABCAdapter.prepare_adapter(FourierAdapter)
## Prepare the input algorithms as if they were coming from web UI submit:
time_series = dao.get_generic_entity(TimeSeriesRegion, DataTypeMetaData.DEFAULT_SUBJECT, "subject")
if len(time_series) < 1:
LOG.error("We could not find a compatible TimeSeries Datatype!")
launch_args = {"time_series": time_series[0].gid}
## launch an operation and have the results stored both in DB and on disk
launched_operation = flow_service.fire_operation(
adapter_instance, project.administrator, project.id, **launch_args
)[0]
## wait for the operation to finish
while not launched_operation.has_finished:
sleep(5)
from tvb.datatypes.time_series import TimeSeriesRegion
from tvb.datatypes.connectivity import Connectivity
LOG = get_logger(__name__)
## Before starting this, we need to have TVB web interface launched at least once (to have a default project, user, etc)
if __name__ == "__main__":
flow_service = FlowService()
operation_service = OperationService()
## This ID of a project needs to exists in DB, and it can be taken from the WebInterface:
project = dao.get_project_by_id(1)
## Prepare the Adapter
adapter_instance = ABCAdapter.prepare_adapter(SimulatorAdapter)
## Prepare the input algorithms as if they were coming from web UI submit:
## TODO create helper methods for working with objects instead of strings.
connectivity = dao.get_generic_entity(Connectivity,
DataTypeMetaData.DEFAULT_SUBJECT,
"subject")[0]
launch_args = dict()
for f in adapter_instance.flaten_input_interface():
launch_args[f["name"]] = str(f["default"]) if 'default' in f else None
launch_args["connectivity"] = connectivity.gid
launch_args[
"model_parameters_option_Generic2dOscillator_variables_of_interest"] = 'V'
if len(sys.argv) > 1:
launch_args[
LOG = get_logger(__name__)
## Before starting this, we need to have TVB web interface launched at least once (to have a default project, user, etc)
if __name__ == "__main__":
flow_service = FlowService()
operation_service = OperationService()
## This ID of a project needs to exists in DB, and it can be taken from the WebInterface:
project = dao.get_project_by_id(1)
## Prepare the Adapter
adapter_instance = ABCAdapter.prepare_adapter(SimulatorAdapter)
## Prepare the input algorithms as if they were coming from web UI submit:
## TODO create helper methods for working with objects instead of strings.
connectivity = dao.get_generic_entity(Connectivity, DataTypeMetaData.DEFAULT_SUBJECT, "subject")[0]
launch_args = dict()
for f in adapter_instance.flaten_input_interface():
launch_args[f["name"]] = str(f["default"]) if 'default' in f else None
launch_args["connectivity"] = connectivity.gid
launch_args["model_parameters_option_Generic2dOscillator_variables_of_interest"] = 'V'
if len(sys.argv) > 1:
launch_args["model_parameters_option_Generic2dOscillator_tau"] = sys.argv[1]
## launch an operation and have the results stored both in DB and on disk
launched_operation = flow_service.fire_operation(adapter_instance, project.administrator,