def update():
"""
Update TVB code to SVN revision version 4455.
This update was done for release 1.0.2.
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start,
page_size=PAGE_SIZE)
for project in projects_page:
try:
user = dao.get_system_user()
adapter = ObjSurfaceImporter()
OperationService().fire_operation(adapter,
user,
project.id,
visible=False,
surface_type=EEG_CAP,
data_file=DATA_FILE_EEG_CAP)
adapter = ObjSurfaceImporter()
OperationService().fire_operation(adapter,
user,
project.id,
visible=False,
surface_type=FACE,
data_file=DATA_FILE_FACE)
except Exception as excep:
LOGGER.exception(excep)
TvbProfile.current.manager.add_entries_to_config_file(
{stored.KEY_MATLAB_EXECUTABLE: get_matlab_executable()})
def update():
"""
Move images previously stored in TVB operation folders, in a single folder/project.
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start,
page_size=PAGE_SIZE)
for project in projects_page:
figures = _figures_in_project(project.id)
for figure in figures:
figure.file_path = "%s-%s" % (figure.operation.id,
figure.file_path)
dao.store_entities(figures)
project_path = FilesHelper().get_project_folder(project)
update_manager = ProjectUpdateManager(project_path)
update_manager.run_all_updates()
project.version = TvbProfile.current.version.PROJECT_VERSION
dao.store_entity(project)
def update():
"""
Move images previously stored in TVB operation folders, in a single folder/project.
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start,
page_end=min(page_start + PAGE_SIZE, projects_count))
for project in projects_page:
figures = _figures_in_project(project.id)
for figure in figures:
figure.file_path = "%s-%s" % (figure.operation.id, figure.file_path)
dao.store_entities(figures)
project_path = FilesHelper().get_project_folder(project)
update_manager = ProjectUpdateManager(project_path)
update_manager.run_all_updates()
project.version = TvbProfile.current.version.PROJECT_VERSION
dao.store_entity(project)
def update():
"""
Update TVB code to SVN revision version 4455.
This update was done for release 1.0.2.
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start, page_size=PAGE_SIZE)
for project in projects_page:
try:
user = dao.get_system_user()
adapter = ObjSurfaceImporter()
FlowService().fire_operation(adapter, user, project.id, visible=False,
surface_type=EEG_CAP, data_file=DATA_FILE_EEG_CAP)
adapter = ObjSurfaceImporter()
FlowService().fire_operation(adapter, user, project.id, visible=False,
surface_type=FACE, data_file=DATA_FILE_FACE)
except Exception as excep:
LOGGER.exception(excep)
TvbProfile.current.manager.add_entries_to_config_file({stored.KEY_MATLAB_EXECUTABLE: get_matlab_executable()})
def update():
"""
Update TVB code to SVN revision version 4455.
This update was done for release 1.0.2.
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start,
page_size=PAGE_SIZE)
for project in projects_page:
try:
user = dao.get_system_user()
adapter = ObjSurfaceImporter()
FlowService().fire_operation(adapter,
user,
project.id,
visible=False,
surface_type=EEG_CAP,
data_file=DATA_FILE_EEG_CAP)
adapter = ObjSurfaceImporter()
FlowService().fire_operation(adapter,
user,
project.id,
visible=False,
surface_type=FACE,
data_file=DATA_FILE_FACE)
except Exception, excep:
LOGGER.exception(excep)
def update():
"""
Update TVB code to SVN revision version 4770.
This update was done for release 1.0.5
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start, page_size=PAGE_SIZE)
for project in projects_page:
try:
handle_event(EVENT_FILE_IDENTIFIER, dao.get_system_user(), project)
except Exception, excep:
LOGGER.exception(excep)
def update():
"""
Update TVB code to SVN revision version 6093.
This update was done for release 1.1.5.
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start, page_size=PAGE_SIZE)
for project in projects_page:
try:
handle_event(EVENT_FILE_IDENTIFIER, dao.get_system_user(), project)
except Exception:
LOGGER.exception("could not migrate project id: %s, name %s" % (project.id, project.name))
def update():
"""
Update TVB code to SVN revision version 4770.
This update was done for release 1.0.5
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start, page_size=PAGE_SIZE)
for project in projects_page:
try:
adapter = Sensors_Importer()
FlowService().fire_operation(adapter, dao.get_system_user(), project.id, visible=False,
sensors_file=DATA_FILE, sensors_type=Sensors_Importer.INTERNAL_SENSORS)
except Exception, excep:
LOGGER.exception(excep)
def update():
"""
Update TVB code to SVN revision version 4770.
This update was done for release 1.0.5
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start, page_size=PAGE_SIZE)
for project in projects_page:
try:
adapter = SensorsImporter()
FlowService().fire_operation(adapter, dao.get_system_user(), project.id, visible=False,
sensors_file=DATA_FILE, sensors_type=SensorsImporter.INTERNAL_SENSORS)
except Exception as excep:
LOGGER.exception(excep)
def update():
"""
Update TVB code to SVN revision version 6093.
This update was done for release 1.1.5.
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start, page_size=PAGE_SIZE)
for project in projects_page:
try:
user = dao.get_system_user()
adapter = ObjSurfaceImporter()
FlowService().fire_operation(adapter, user, project.id, visible=False,
surface_type=FACE, data_file=DATA_FILE_FACE)
except Exception:
LOGGER.exception("could not migrate project id: %s, name %s" % (project.id, project.name))
def update():
"""
Cleanup Projections from disk (make sure Projection Regions are being removed).
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start, page_size=PAGE_SIZE)
for project in projects_page:
project_path = FilesHelper().get_project_folder(project)
update_manager = ProjectUpdateManager(project_path)
update_manager.run_all_updates()
project.version = TvbProfile.current.version.PROJECT_VERSION
dao.store_entity(project)
def update():
"""
Update TVB code to SVN revision version 6093.
This update was done for release 1.1.5.
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start, page_size=PAGE_SIZE)
for project in projects_page:
try:
user = dao.get_system_user()
adapter = ObjSurfaceImporter()
OperationService().fire_operation(adapter, user, project.id, visible=False,
surface_type=SurfaceTypesEnum.FACE_SURFACE.value,
data_file=DATA_FILE_FACE)
except Exception:
LOGGER.exception("could not migrate project id: %s, name %s" % (project.id, project.name))
def update():
"""
Cleanup Projections from disk (make sure Projection Regions are being removed).
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start,
page_size=PAGE_SIZE)
for project in projects_page:
project_path = FilesHelper().get_project_folder(project)
update_manager = ProjectUpdateManager(project_path)
update_manager.run_all_updates()
project.version = TvbProfile.current.version.PROJECT_VERSION
dao.store_entity(project)
def update():
"""
Update TVB code to SVN revision version 4455.
This update was done for release 1.0.2.
"""
projects_count = dao.get_all_projects(is_count=True)
for page_start in range(0, projects_count, PAGE_SIZE):
projects_page = dao.get_all_projects(page_start=page_start, page_size=PAGE_SIZE)
for project in projects_page:
try:
user = dao.get_system_user()
adapter = ObjSurfaceImporter()
FlowService().fire_operation(adapter, user, project.id, visible=False,
surface_type=EEG_CAP, data_file=DATA_FILE_EEG_CAP)
adapter = ObjSurfaceImporter()
FlowService().fire_operation(adapter, user, project.id, visible=False,
surface_type=FACE, data_file=DATA_FILE_FACE)
except Exception, excep:
LOGGER.exception(excep)
def read_h5(full_paths):
# We need to load the DataType in the context of an operation, and a project
all_projects = dao.get_all_projects()
all_operations = dao.get_generic_entity(model.Operation, all_projects[0].id, "fk_launched_in")
service = ImportService()
results = []
for full_path in full_paths:
folder, h5file = os.path.split(full_path)
# The actual read of H5:
datatype = service.load_datatype_from_file(folder, h5file, all_operations[0].id, move=False)
print "We've build DataType: [%s]" % datatype.__class__.__name__, datatype
results.append(datatype)
return results
def read_h5(full_paths):
# We need to load the DataType in the context of an operation, and a project
all_projects = dao.get_all_projects()
all_operations = dao.get_generic_entity(Operation, all_projects[0].id,
"fk_launched_in")
service = ImportService()
results = []
for full_path in full_paths:
# The actual read of H5:
datatype = service.load_datatype_from_file(full_path,
all_operations[0].id)
print("We've build DataType: [%s]" % datatype.__class__.__name__,
datatype)
results.append(datatype)
return results
def list_projects():
fmt = "%24s %5s"
print(fmt % ('name', 'id'))
for p in dao.get_all_projects():
print(fmt % (p.name, p.id))
def list_projects():
fmt = "%24s %5s"
print(fmt % ('name', 'id'))
for p in dao.get_all_projects():
print(fmt % (p.name, p.id))
#
#
"""
Demo script for console profile which is showing how a project export can be done from the command line.
After running this script, you should have a message in the console telling where the exported ZIP is placed.
.. moduleauthor:: Lia Domide <*****@*****.**>
"""
from tvb.core.services.project_service import ProjectService
from tvb.core.entities.storage import dao
from tvb.adapters.exporters.export_manager import ExportManager
def run_export(project_id, loose_irrelevant=False):
s = ProjectService()
mng = ExportManager()
project = s.find_project(project_id)
export_file = mng.export_project(project, loose_irrelevant)
print("Check the exported file: %s" % export_file)
if __name__ == '__main__':
from tvb.interfaces.command.lab import *
projects = dao.get_all_projects()
run_export(projects[0].id)
