def main():
login, password = get_credentials()
# log-in to Django site
if login and password:
tw.go(LOGIN_URL)
tw.formvalue('1', 'username', login)
tw.formvalue('1', 'password', password)
tw.submit()
if isinstance(DATA_URL, basestring):
urls = [DATA_URL]
else:
urls = list(DATA_URL)
# retrieve URIs
for url in urls:
try:
tw.go(url)
tw.code('200')
tw.show()
except TwillAssertionError:
code = get_browser().get_code()
print (u"Unable to access %(url)s. "
u"Received HTTP #%(code)s."
% {'url': url, 'code': code})
tw.reset_browser()
def main():
login, password = get_credentials()
# log-in to Django site
if login and password:
tw.go(LOGIN_URL)
tw.formvalue('1', 'username', login)
tw.formvalue('1', 'password', password)
tw.submit()
if isinstance(DATA_URL, basestring):
urls = [DATA_URL]
else:
urls = list(DATA_URL)
# retrieve URIs
for url in urls:
try:
tw.go(url)
tw.code('200')
tw.show()
except TwillAssertionError:
code = get_browser().get_code()
print(u"Unable to access %(url)s. "
u"Received HTTP #%(code)s." % {
'url': url,
'code': code
})
tw.reset_browser()
def list_cars():
c.go('http://icfpcontest.org/icfp10/score/instanceTeamCount')
cars = re.findall(all_cars_rx, c.show())
if not cars:
sys.stderr.write(c.show())
sys.stderr.write('Could not find any cars')
return cars
def add_class(self, unique_number):
class_url = self.url + '/' + unique_number
tc.go(class_url)
html = StringIO.StringIO()
twill.set_output(html)
tc.show()
soup = BeautifulSoup(html.getvalue())
table = soup.find('table')
for row in table.findAll('tr')[1:]:
columns = row.findAll('td')
unique = columns[0].string
days = [d.text for d in columns[1].findAll('span')]
hour = [d.text for d in columns[2].findAll('span')]
room = [d.text for d in columns[3].findAll('span')]
instructor = columns[4].span.text
new_course = Course(unique, days, hour, room, instructor)
if self._check_planner_to_add(new_course):
self.course_set.add(new_course)
days_to_add = new_course.parse_days()
hours_to_add = new_course.parse_hours()
for d in range(len(days_to_add)):
for h in range(hours_to_add[d][0], hours_to_add[d][1]):
for day in days_to_add[d]:
self.grid[h][day] = new_course
print("Course successfully added.")
def login(username):
"""Find user for given username and make the browser logged in"""
global_dict, local_dict = namespaces.get_twill_glocals()
# Set a globabl Twill variable to let Twill scripts now the name
# of the test, e.g. the directory, as well as community name.
#global_dict['test_name'] = test_name
#global_dict['community_name'] = test_name + "-testcase"
global_dict['cwd'] = os.getcwd()
hn = global_dict['localhost_url']
# First logout
logout()
# Do a login
au = global_dict['%s_user' % username]
# Echo to screen
dump("Logging into %s as %s" % (hn, au))
# Continue
ap = global_dict['%s_password' % username]
commands.go(hn + '/login.html')
commands.fv("formLogin", "login", au)
commands.fv("formLogin", "password", ap)
commands.submit()
# Make sure the login succeeded
commands.show()
commands.find("My Profile")
def test_simple_index_case(root):
root.join("FooBar-1.0.zip").write("")
root.join("FooBar-1.1.zip").write("")
go("/simple/foobar")
show()
links = list(showlinks())
assert len(links) == 2
def test_simple_index_case(root):
root.join("FooBar-1.0.zip").write("")
root.join("FooBar-1.1.zip").write("")
go("/simple/foobar")
show()
links = list(showlinks())
assert len(links) == 2
def test_nonroot_simple_packages(root):
root.join("foobar-1.0.zip").write("123")
for url in ["http://nonroot/priv/packages",
"http://nonroot/priv/packages/"]:
go(url)
show()
links = list(showlinks())
assert len(links) == 1
assert links[0].url == "/priv/packages/foobar-1.0.zip"
def test_nonroot_simple_packages(root):
root.join("foobar-1.0.zip").write("123")
for url in [
"http://nonroot/priv/packages", "http://nonroot/priv/packages/"
]:
go(url)
show()
links = list(showlinks())
assert len(links) == 1
assert links[0].url == "/priv/packages/foobar-1.0.zip"
def test_simple_index_list(root):
root.join("foobar-1.0.zip").write("")
root.join("foobar-1.1.zip").write("")
root.join("foobarbaz-1.1.zip").write("")
root.join("foobar.baz-1.1.zip").write("")
go("/simple/")
show()
links = list(showlinks())
assert len(links) == 3
def test_simple_index_list(root):
root.join("foobar-1.0.zip").write("")
root.join("foobar-1.1.zip").write("")
root.join("foobarbaz-1.1.zip").write("")
root.join("foobar.baz-1.1.zip").write("")
go("/simple/")
show()
links = list(showlinks())
assert len(links) == 3
def test_root_count(root):
go("/")
show()
code(200)
find("PyPI compatible package index serving 0 packages")
showlinks()
root.join("Twisted-11.0.0.tar.bz2").write("")
reload()
show()
find("PyPI compatible package index serving 1 packages")
def test_profile_record():
"""
Test availability of user profile
"""
go(SITE + '/accounts/login/')
code(200)
show()
formvalue(1, 'username', 'root')
formvalue(1, 'password', '1')
submit()
code(200)
def test_root_count(root):
go("/")
show()
code(200)
find("PyPI compatible package index serving 0 packages")
showlinks()
root.join("Twisted-11.0.0.tar.bz2").write("")
reload()
show()
find("PyPI compatible package index serving 1 packages")
def test_reset_password():
"""
Test user password reset
"""
go(SITE + '/accounts/password/reset/')
code(200)
show()
formvalue(1, 'email', '*****@*****.**')
submit()
code(200)
find('Password reset successful')
return
def test_success_login():
"""
Test a success log in to site
"""
go(SITE + '/accounts/login/')
code(200)
show()
formvalue(1, 'username', 'test')
formvalue(1, 'password', '1')
submit()
code(200)
find('<h4 align="center">My profile</h4>')
return
def test_incorrect_username():
"""
Test an incorrect log in to site with invalid username
"""
go(SITE + '/accounts/login/')
code(200)
show()
formvalue(1, 'username', 'testincorrect')
formvalue(1, 'password', '1')
submit()
code(200)
find('Please enter a correct username and password.')
return
def _requestLikes (self, startingLike, startingThumb):
url = PANDORA_LIKES_URL.substitute(webname = self.webname, likestart = startingLike, thumbstart = startingThumb)
Browser.go(url)
likesList = self._songHtmlToList(Browser.show())
soup = BeautifulSoup(Browser.show())
nextInfoElement = soup.find('div', {'class': 'show_more tracklike'})
nextStartingLike = self._attributeNumberValueOrZero(nextInfoElement, 'data-nextlikestartindex')
nextStartingThumb = self._attributeNumberValueOrZero(nextInfoElement, 'data-nextthumbstartindex')
return (likesList, nextStartingLike, nextStartingThumb)
def download_with_login(url,
login_url,
login=None,
password=None,
ext='',
username_field='username',
password_field='password',
form_id=1):
''' Download a URI from a website using Django by loging-in first
1. Logs in using supplied login & password (if provided)
2. Create a temp file on disk using extension if provided
3. Write content of URI into file '''
# log-in to Django site
if login and password:
tw.go(login_url)
tw.formvalue('%s' % form_id, username_field, login)
tw.formvalue('%s' % form_id, password_field, password)
tw.submit()
# retrieve URI
try:
tw.go(url)
tw.code('200')
except TwillAssertionError:
code = get_browser().get_code()
# ensure we don't keep credentials
tw.reset_browser()
raise DownloadFailed(u"Unable to download %(url)s. "
u"Received HTTP #%(code)s." % {
'url': url,
'code': code
})
buff = StringIO.StringIO()
twill.set_output(buff)
try:
tw.show()
finally:
twill.set_output(None)
tw.reset_browser()
# write file on disk
suffix = '.%s' % ext if ext else ''
fileh, filename = tempfile.mkstemp(suffix=suffix)
os.write(fileh, buff.getvalue())
os.close(fileh)
buff.close()
return filename
def test_register():
"""
Test user registration
"""
go(SITE + '/accounts/register/')
code(200)
show()
formvalue(1, 'username', 'demouser')
formvalue(1, 'email', '*****@*****.**')
formvalue(1, 'password1', '1')
formvalue(1, 'password2', '1')
submit()
code(200)
find('Confirmation e-mail sent')
return
def ff():
""" show current page in firefox """
# if not os.environ.get('DEBUG_TEST', False):
# return
# turn on debugging to show
# set_debugging(True)
filename = '/tmp/_yp_test_%s' % uniq() # os.tmpnam() make warnings
f = open(filename, 'w')
html = cmd.show()
# replace home urls to htdocs dir urls
html = html.replace('"/', '"%s/htdocs/' % SITE_ROOT)
html = html.replace('url(/', 'url(%s/htdocs/' % SITE_ROOT)
# delete rX for css version
for r in range(7, 50):
html = html.replace('/r%s/' % r, '/')
f.write(html)
f.close()
os.system('/usr/bin/env firefox %s' % filename)
def test_image_processing_library_error(self):
"""
If the image processing library errors while preparing a photo, report a
helpful message to the user and log the error. The photo is not added
to the user's profile.
"""
# Get a copy of the error log.
string_log = StringIO.StringIO()
logger = logging.getLogger()
my_log = logging.StreamHandler(string_log)
logger.addHandler(my_log)
logger.setLevel(logging.ERROR)
self.login_with_twill()
tc.go(make_twill_url('http://openhatch.org/people/paulproteus/'))
tc.follow('photo')
# This is a special image from issue166 that passes Django's image
# validation tests but causes an exception during zlib decompression.
tc.formfile('edit_photo', 'photo', photo('static/images/corrupted.png'))
tc.submit()
tc.code(200)
self.assert_("Something went wrong while preparing this" in tc.show())
p = Person.objects.get(user__username='******')
self.assertFalse(p.photo.name)
# an error message was logged during photo processing.
self.assert_("zlib.error" in string_log.getvalue())
logger.removeHandler(my_log)
def leave_all_studentsets_named(studentset_name):
b = cmd.get_browser()
cmd.go("/py/teacher/studentset/list/")
soup = BeautifulSoup(cmd.show())
for tststudentset in soup.findAll('a', text=studentset_name):
stsid = int(tststudentset.parent['href'].split('/')[-2])
studentset_leave(stsid)
def test_image_processing_library_error(self):
"""
If the image processing library errors while preparing a photo, report a
helpful message to the user and log the error. The photo is not added
to the user's profile.
"""
# Get a copy of the error log.
string_log = StringIO.StringIO()
logger = logging.getLogger()
my_log = logging.StreamHandler(string_log)
logger.addHandler(my_log)
logger.setLevel(logging.ERROR)
self.login_with_twill()
tc.go(make_twill_url('http://openhatch.org/people/paulproteus/'))
tc.follow('photo')
# This is a special image from issue166 that passes Django's image
# validation tests but causes an exception during zlib decompression.
tc.formfile('edit_photo', 'photo',
photo('static/images/corrupted.png'))
tc.submit()
tc.code(200)
self.assert_("Something went wrong while preparing this" in tc.show())
p = Person.objects.get(user__username='******')
self.assertFalse(p.photo.name)
# an error message was logged during photo processing.
self.assert_("zlib.error" in string_log.getvalue())
logger.removeHandler(my_log)
def get_building_cost(self, id):
""" Read the cost for expanding building """
commands.go(SERVER + 'build.php?id=' + str(id))
html = commands.show()
soup = BeautifulSoup(html)
cost = {}
cost['wood'] = int(
soup.find('span', {
'class': re.compile('.*r1.*')
}).text)
cost['clay'] = int(
soup.find('span', {
'class': re.compile('.*r2.*')
}).text)
cost['iron'] = int(
soup.find('span', {
'class': re.compile('.*r3.*')
}).text)
cost['cerial'] = int(
soup.find('span', {
'class': re.compile('.*r4.*')
}).text)
cost['space'] = int(
soup.find('span', {
'class': re.compile('.*r5.*')
}).text)
return cost
def get_job_queue():
"""
fetch list of disease model jobs waiting to run from dismod server
given in settings.py.
"""
dismod_server_login()
twc.go(DISMOD_LIST_JOBS_URL)
return json.loads(twc.show())
def student_casual_register(access_key, login):
cmd.go('/py/student/login/')
cmd.show()
cmd.fv(2, 'full_access_key', access_key)
cmd.submit()
no = re.search(
re.compile('(\/py\/student\/login\/\d+-\w+\/join\/register\/)'),
cmd.show()).groups()[0]
cmd.go(no)
cmd.fv(1, 'forename', 'generic')
cmd.fv(1, 'surname', 'robot')
cmd.fv(1, 'login', login)
cmd.fv(1, 'passwd', 'mymy')
cmd.fv(1, 'passwd2', 'mymy')
cmd.submit()
cmd.url('/py/student/')
def get_job_queue():
"""
fetch list of disease model jobs waiting to run from dismod server
given in settings.py.
"""
dismod_server_login()
twc.go(DISMOD_LIST_JOBS_URL)
return json.loads(twc.show())
def download_with_login(url, login_url, login=None,
password=None, ext='',
username_field='username',
password_field='password',
form_id=1):
''' Download a URI from a website using Django by loging-in first
1. Logs in using supplied login & password (if provided)
2. Create a temp file on disk using extension if provided
3. Write content of URI into file '''
# log-in to Django site
if login and password:
tw.go(login_url)
tw.formvalue('%s' % form_id, username_field, login)
tw.formvalue('%s' % form_id, password_field, password)
tw.submit()
# retrieve URI
try:
tw.go(url)
tw.code('200')
except TwillAssertionError:
code = get_browser().get_code()
# ensure we don't keep credentials
tw.reset_browser()
raise DownloadFailed(u"Unable to download %(url)s. "
u"Received HTTP #%(code)s."
% {'url': url, 'code': code})
buff = StringIO.StringIO()
twill.set_output(buff)
try:
tw.show()
finally:
twill.set_output(None)
tw.reset_browser()
# write file on disk
suffix = '.%s' % ext if ext else ''
fileh, filename = tempfile.mkstemp(suffix=suffix)
os.write(fileh, buff.getvalue())
os.close(fileh)
buff.close()
return filename
def getNumberOfLikes (self):
url = PANDORA_LIKES_COUNT_URL.substitute(webname = self.webname)
Browser.go(url)
soup = BeautifulSoup(Browser.show())
songsDiv = soup.find('div', {'id': 'songs'})
numberSpan = songsDiv.find('span', {'class': 'section_count'})
return int(numberSpan.text.strip('()'))
def get_posted_holds(self):
print '[%s] Checking holds ...' % str(datetime.datetime.now())
twillc.go('https://my.umcu.org/User/MainAccounts/List')
self.pgutil.ensure_url('https://my.umcu.org/User/MainAccounts/List')
soup = BeautifulSoup(twillc.show())
holds = [ re.sub('\s{2,}', '|', row.text.strip())
for row in soup.select('#HoldsId table tr.BasicLine')]
return holds
def assign(ssid, content):
cmd.go('/py/teacher/assignment/new/')
cmd.find(content[0])
soup = BeautifulSoup(cmd.show())
cmd.go(soup.find('a', text=content[0]).parent['href'])
soup = BeautifulSoup(cmd.show())
cmd.go(soup.find('a', text=content[1]).parent['href'])
soup = BeautifulSoup(cmd.show())
assignment = soup.find(
'b', text=content[2]).parent.parent.parent.find('input')['value']
cmd.fv(2, 'task', assignment)
cmd.config('readonly_controls_writeable', '+')
cmd.fv(2, 'mainform_force_next', 'yes')
cmd.submit()
b = cmd.get_browser()
mb = b._browser
r = mb.open(b.get_url(), 'studentset_id=%d' % ssid)
cmd.submit()
def get_resourses(self):
""" Parse resourses """
commands.go(SERVER + 'dorf1.php')
html = commands.show()
soup = BeautifulSoup(html)
self.resourses['wood'] = int(soup.find('span', {'id': 'l1'}).text)
self.resourses['clay'] = int(soup.find('span', {'id': 'l2'}).text)
self.resourses['iron'] = int(soup.find('span', {'id': 'l3'}).text)
self.resourses['cereal'] = int(soup.find('span', {'id': 'l4'}).text)
def get_fields(self):
""" Get lvl of production fields """
commands.go(SERVER + 'dorf1.php')
html = commands.show()
soup = BeautifulSoup(html)
self.fields['wood'] = [int(f.text) for f in soup.findAll('div', {'class': re.compile('.*gid1.*')})]
self.fields['clay'] = [int(f.text) for f in soup.findAll('div', {'class': re.compile('.*gid2.*')})]
self.fields['iron'] = [int(f.text) for f in soup.findAll('div', {'class': re.compile('.*gid3.*')})]
self.fields['cereal'] = [int(f.text) for f in soup.findAll('div', {'class': re.compile('.*gid4.*')})]
def get_resourses(self):
""" Parse resourses """
commands.go(SERVER + 'dorf1.php')
html = commands.show()
soup = BeautifulSoup(html)
self.resourses['wood'] = int(soup.find('span', {'id': 'l1'}).text)
self.resourses['clay'] = int(soup.find('span', {'id': 'l2'}).text)
self.resourses['iron'] = int(soup.find('span', {'id': 'l3'}).text)
self.resourses['cereal'] = int(soup.find('span', {'id': 'l4'}).text)
def getVoteCredentials(redditURL):
t.go(redditURL + "/.compact")
page = PyQuery(t.show())
voteHash = page(".link").find(".arrow").eq(0).attr.onclick.split("'")[1]
storyID = page(".link").attr.class_.split("-")[1]
modHash = getModHashFromCurrentPage()
subredditName = redditURL.split("/")[4]
return (storyID, voteHash, modHash, subredditName)
def remove_from_job_queue(id):
"""
remove a disease model from the job queue on the dismod server
given in dismod3/settings.py
"""
dismod_server_login()
twc.go(DISMOD_REMOVE_JOB_URL)
twc.fv("1", "id", str(id))
twc.submit()
return json.loads(twc.show())
def remove_from_job_queue(id):
"""
remove a disease model from the job queue on the dismod server
given in dismod3/settings.py
"""
dismod_server_login()
twc.go(DISMOD_REMOVE_JOB_URL)
twc.fv('1', 'id', str(id))
twc.submit()
return json.loads(twc.show())
def annotate(params, proteins, \
url="http://signalfind.org/tatfind.html", force=False):
"""
Interfaces with the TatFind web service at (http://signalfind.org/tatfind.html)
to predict if protein sequences contain Twin-Arginine Translocation (Tat)
signal peptides.
"""
# set the user-agent so web services can block us if they want ... :/
python_version = sys.version.split()[0]
agent("Python-urllib/%s (twill; inmembrane)" % python_version)
outfn = 'tatfind.out'
log_stderr("# TatFind(web) %s > %s" % (params['fasta'], outfn))
if not force and os.path.isfile(outfn):
log_stderr("# -> skipped: %s already exists" % outfn)
fh = open(outfn, 'r')
proteins = parse_tatfind_output(fh, proteins)
fh.close()
return proteins
# dump extraneous output into this blackhole so we don't see it
if not __DEBUG__: twill.set_output(StringIO.StringIO())
go(url)
if __DEBUG__: showforms()
formfile("1", "seqFile", params["fasta"])
submit()
if __DEBUG__: show()
tatfind_output = show()
if __DEBUG__: log_stderr(tatfind_output)
# write raw TatFind output to a file
fh = open(outfn, 'w')
fh.write(tatfind_output)
fh.close()
proteins = parse_tatfind_output(tatfind_output.split("\n"), proteins)
return proteins
def annotate(params, proteins, \
url="http://signalfind.org/tatfind.html", force=False):
"""
Interfaces with the TatFind web service at (http://signalfind.org/tatfind.html)
to predict if protein sequences contain Twin-Arginine Translocation (Tat)
signal peptides.
"""
# set the user-agent so web services can block us if they want ... :/
python_version = sys.version.split()[0]
agent("Python-urllib/%s (twill; inmembrane)" % python_version)
outfn = 'tatfind.out'
log_stderr("# TatFind(web) %s > %s" % (params['fasta'], outfn))
if not force and os.path.isfile(outfn):
log_stderr("# -> skipped: %s already exists" % outfn)
fh = open(outfn, 'r')
proteins = parse_tatfind_output(fh, proteins)
fh.close()
return proteins
# dump extraneous output into this blackhole so we don't see it
if not __DEBUG__: twill.set_output(StringIO.StringIO())
go(url)
if __DEBUG__: showforms()
formfile("1", "seqFile", params["fasta"])
submit()
if __DEBUG__: show()
tatfind_output = show()
if __DEBUG__: log_stderr(tatfind_output)
# write raw TatFind output to a file
fh = open(outfn, 'w')
fh.write(tatfind_output)
fh.close()
proteins = parse_tatfind_output(tatfind_output.split("\n"), proteins)
return proteins
def fetch_disease_model(id):
from twill import set_output
set_output(open('/dev/null', 'w'))
dismod_server_login()
twc.go(DISMOD_DOWNLOAD_URL % id)
result_json = twc.show()
twc.get_browser()._browser._response.close() # end the connection, so that apache doesn't get upset
dm = DiseaseJson(result_json)
return dm
def get_building_cost(self, id):
""" Read the cost for expanding building """
commands.go(SERVER + 'build.php?id=' + str(id))
html = commands.show()
soup = BeautifulSoup(html)
cost = {}
cost['wood'] = int(soup.find('span', {'class': re.compile('.*r1.*')}).text)
cost['clay'] = int(soup.find('span', {'class': re.compile('.*r2.*')}).text)
cost['iron'] = int(soup.find('span', {'class': re.compile('.*r3.*')}).text)
cost['cerial'] = int(soup.find('span', {'class': re.compile('.*r4.*')}).text)
cost['space'] = int(soup.find('span', {'class': re.compile('.*r5.*')}).text)
return cost
def getTopicsFromCoachReportsPage( ):
if s218:
go( "http://129.21.142.218:8008/coachreports/" )
else:
go( "http://129.21.142.118:8008/coachreports/")
soup = BeautifulSoup( show() )
#get all the topics (like 'addition-subtraction') from the select widget on the page
selectDivs = soup.findAll('div', {'class':'selection'})
divWIthTopics = selectDivs[1]
optionTags = divWIthTopics.findAll('option')[1:] #first one is empty
return [option['value'] for option in optionTags]
def _songHtmlToList (self, html):
songList = []
soup = BeautifulSoup(Browser.show())
songs = soup.findAll('div', {'class': 'infobox-body'})
for song in songs:
links = song.findAll('a')
title = links[0].text
artist = links[1].text
songList.append([title, artist])
return songList
def test_change_password():
"""
Test user password change
"""
go(SITE + '/accounts/login/')
code(200)
show()
formvalue(1, 'username', 'test')
formvalue(1, 'password', '1')
submit()
code(200)
go(SITE + '/accounts/password/change/')
code(200)
show()
formvalue(1, 'old_password', '1')
formvalue(1, 'new_password1', '2')
formvalue(1, 'new_password2', '2')
submit()
code(200)
find('Password change successful')
go(SITE + '/accounts/login/')
code(200)
show()
formvalue(1, 'username', 'test')
formvalue(1, 'password', '2')
submit()
code(200)
return
def fetch_disease_model(id):
from twill import set_output
set_output(open("/dev/null", "w"))
dismod_server_login()
twc.go(DISMOD_DOWNLOAD_URL % id)
result_json = twc.show()
twc.get_browser()._browser._response.close() # end the connection, so that apache doesn't get upset
dm = DiseaseJson(result_json)
return dm
def campusnet_login(l_username, l_password):
commands.go('https://campusnet.jacobs-university.de/scripts/mgrqispi.dll?APPNAME=CampusNet&PRGNAME=ACTION&ARGUMENTS=-A9PnS7.Eby4LCWWmmtOcbYKUQ-so-sF48wtHtVNWX9aIeYmoSh5mej--SCbT.jubdlAouHy3dHzwyr-O.ufj3NVAYCNiJr0CFcBNwA3xADclRCTyqC0Oip8drT0F=')
commands.fv('1', 'usrname', l_username)
commands.fv('1', 'pass', l_password)
commands.submit('3')
out = sys.stdout
bin = open(os.devnull, 'w')
sys.stdout = bin
returned_page = commands.show()
sys.stdout = out
return returned_page
def get_student_info(student_id, ssid):
cmd.go('/py/teacher/studentset/student/%s/edit/studentset/%s/' \
%(student_id, ssid))
soup = BeautifulSoup(cmd.show())
return dict(id=student_id,
ssid=ssid,
login=soup.find('td', {
'class': 'first-cell'
}, text='Login').parent.parent.find('td', {
'class': 'second-cell'
}).string,
password=soup.find('input', {'id': 'id_passwd'})['value'],
forename=soup.find('input', {'id': 'id_forename'})['value'],
surname=soup.find('input', {'id': 'id_surname'})['value'])
def test_processing_simplify():
"""cfg:
[process_simplify]
module=Simplify
class=Simplify
tolerance_default=.1
tolerance_locked=no
[scribble]
type=SQLite
file=/var/www/ms_tmp/featureserver.scribble
gaping_security_hole=yes
template=template/default-withmap.html
processes=simplify
"""
s1 = StringIO()
twill.set_output(s1)
tc.go("http://%s/scribble/1.geojson?process_simplify_tolerance=0.001" % full_host)
tc.show()
s2 = StringIO()
twill.set_output(s2)
tc.go("http://%s/scribble/1.geojson?process_simplify_tolerance=100" % full_host)
tc.show()
s1 = s1.getvalue()
s2 = s2.getvalue()
# import sys
# print >>sys.stderr, s1
# print >>sys.stderr, ''
# print >>sys.stderr, s2
assert "processed_by" in s2
# it's simplified so it should be shorter ... add a better test...
assert len(s2) <= len(s1)
def fetchUpToThreeMonths(startDate, endDate, accountID):
if (endDate - startDate).days <= 90:
url = "https://venmo.com/transaction-history/" \
+ formatRequest(startDate, endDate) \
+ f"&profileId={accountID}&accountType=personal"
tw.go(url)
try:
df = read_csv(io.StringIO(tw.show()), encoding='utf8', header=2)
row, col = df.shape
return df.drop([row-1])
except Exception as e:
print(f"problem reading response: {e}")
return None
else:
raise Exception("Cannot fetch date range greater than 90 days")
def can_attack(self):
""" Determine if it is possible to attack """
if not self.attacking():
commands.go(SERVER + 'build.php?tt=2&id=39')
html = commands.show()
soup = BeautifulSoup(html)
for troop, num in self.troops.items():
link = soup.find(
'a', {'onclick': re.compile('.*\.' + troop + '\..*')})
if not link or int(link.text) < int(num):
print "Not enought troops to attack"
return False
return True
else:
print "This farm is being attacked"
return False
def getResults(opts):
# Twill prints a lot of shit, we don't want that.
twill.set_output(StringIO.StringIO())
# Log into studweb
tc.go(
"https://studweb.uio.no/as/WebObjects/studentweb2.woa/3/wa/default?inst=UiO"
)
tc.fv("2", "fodselsnr", opts["fnr"])
tc.fv("2", "pinkode", opts["pin"])
tc.submit()
# Navigating to grades. Bad localization for NN users. No loc. for EN :(
try:
tc.follow('Se opplysninger om deg')
except te.TwillAssertionError:
try:
# Note: wildcard in linkname.
# Problems with special NO chars (æøå).
tc.follow('Sj. opplysningar om deg')
except te.TwillAssertionError:
print "Error: Unknown language on site?"
sys.exit(1)
tc.follow('Resultater')
# Storing HTML in var.
data = tc.show()
tc.follow('Logg ut')
# Pulling coursecode and grade out of HTML, converting flunking to
# 'F', and putting it in an array.
# Ex. result: [["INF1000", "B"], ["INF1040", "E"]]
res = re.findall('<tr class="pysj\d">(.*?)</tr>', data)
ans = {}
for i in res:
if not re.search("Ikkje møtt|Ikke møtt", i):
tmp = re.findall("<td.*?>(.*?)</td>", i)
if not re.search("[A-E]", tmp[7]):
tmp[7] = "F"
if (not ans.has_key(tmp[1])) or (ans.has_key(tmp[1])
and ans[tmp[1]] == "F"):
ans[tmp[1]] = tmp[7]
return reduce(lambda x, y: x + [[y, ans[y]]], ans, [])
def login_interactive(self):
print '''
Cardamon will need your UMCU and GMail login information.
The UMCU login information will be used to automatically
login into the UMCU web-portal and monitor your holds.
The GMail login information will be used to send e-mails
when new holds are posted to your account. All login
information will be stored SECURELY.
To re-enter login information start cardamon with the
--from-scratch flag:
./cardamon.py --from-scratch
Remember that UMCU freezes weblogins after three
unsuccessful attempts. If login fails for any reason, please
go to https://www.umcu.org/ and verify your login
information
Lets begin now ...
'''
twillc.go('https://www.umcu.org/')
self.username = SecureStorage.get('UMCU UserName', False)
twillc.fv('4', 'UsernameField', self.username)
twillc.submit('SubmitNext')
self.pgutil.ensure_url('https://my.umcu.org/User/AccessSignin/Password')
self.password = SecureStorage.get('UMCU Password')
twillc.fv('1', 'PasswordField', self.password)
twillc.submit('SubmitNext')
print 'UMCU wants you to answer a security question:'
self.pgutil.ensure_url('https://my.umcu.org/User/AccessSignin/Challenge')
soup = BeautifulSoup(twillc.show())
question = soup.select('#AccessForm td')[2].text.strip() + '\n'
twillc.fv('1', 'Answer', SecureStorage.get(question, False))
twillc.fv('1', 'Remember', 'True')
twillc.submit('SubmitNext')
self.pgutil.ensure_url('https://my.umcu.org/User/MainAccounts/List')
print '\nLOGIN SUCCESSFUL\n\n'
def get_fields(self):
""" Get lvl of production fields """
commands.go(SERVER + 'dorf1.php')
html = commands.show()
soup = BeautifulSoup(html)
self.fields['wood'] = [
int(f.text)
for f in soup.findAll('div', {'class': re.compile('.*gid1.*')})
]
self.fields['clay'] = [
int(f.text)
for f in soup.findAll('div', {'class': re.compile('.*gid2.*')})
]
self.fields['iron'] = [
int(f.text)
for f in soup.findAll('div', {'class': re.compile('.*gid3.*')})
]
self.fields['cereal'] = [
int(f.text)
for f in soup.findAll('div', {'class': re.compile('.*gid4.*')})
]
def attack(self):
""" Attack the farm """
print "Attack (" + self.x + "|" + self.y + "): ",
if self.can_attack():
commands.go(SERVER + 'build.php?tt=2&id=39')
commands.fv('2', 'x', self.x)
commands.fv('2', 'y', self.y)
commands.fv('2', 'c', '4')
for troop, num in self.troops.items():
commands.fv('2', troop, num)
commands.submit()
commands.reload()
html = commands.show()
soup = BeautifulSoup(html)
t = soup.find('div', {'class': 'in'}).text
t = re.search('[0-9][0-9]?:[0-9]{2}:[0-9]{2}', t).group(0)
h, m, s = [2 * int(e) for e in t.split(':')]
wait = datetime.timedelta(seconds=s, minutes=m, hours=h)
self.next_attack = datetime.datetime.now() + wait
commands.fv('2', 's1', 'ok')
commands.submit()
print "done"
def test_invalid_photo(self):
"""
If the uploaded image is detected as being invalid, report a helpful
message to the user. The photo is not added to the user's profile.
"""
bad_image = tempfile.NamedTemporaryFile(delete=False)
self.login_with_twill()
try:
bad_image.write("garbage")
bad_image.close()
tc.go(make_twill_url('http://openhatch.org/people/paulproteus/'))
tc.follow('photo')
tc.formfile('edit_photo', 'photo', bad_image.name)
tc.submit()
tc.code(200)
self.assert_("The file you uploaded was either not an image or a "
"corrupted image" in tc.show())
p = Person.objects.get(user__username='******')
self.assertFalse(p.photo.name)
finally:
os.unlink(bad_image.name)
def annotate(params, proteins, \
force=False):
"""
DEPRECATED: The TMB-HUNT server appears to be permanently offline.
Uses the TMB-HUNT web service
(http://bmbpcu36.leeds.ac.uk/~andy/betaBarrel/AACompPred/aaTMB_Hunt.cgi) to
predict if proteins are outer membrane beta-barrels.
NOTE: In my limited testing, TMB-HUNT tends to perform very poorly in
terms of false positives and false negetives. I'd suggest using only
BOMP.
"""
# TODO: automatically split large sets into multiple jobs
# TMB-HUNT will only take 10000 seqs at a time
if len(proteins) >= 10000:
log_stderr(
"# ERROR: TMB-HUNT(web): can't take more than 10,000 sequences.")
return
# set the user-agent so web services can block us if they want ... :/
python_version = sys.version.split()[0]
agent("Python-urllib/%s (twill; inmembrane)" % python_version)
out = 'tmbhunt.out'
log_stderr("# TMB-HUNT(web) %s > %s" % (params['fasta'], out))
if not force and os.path.isfile(out):
log_stderr("# -> skipped: %s already exists" % out)
return parse_tmbhunt(proteins, out)
# dump extraneous output into this blackhole so we don't see it
if not __DEBUG__: twill.set_output(StringIO.StringIO())
go("http://bmbpcu36.leeds.ac.uk/~andy/betaBarrel/AACompPred/aaTMB_Hunt.cgi"
)
if __DEBUG__: showforms()
# read up the FASTA format seqs
fh = open(params['fasta'], 'r')
fasta_seqs = fh.read()
fh.close()
# fill out the form
fv("1", "sequences", fasta_seqs)
submit()
if __DEBUG__: showlinks()
# small jobs will lead us straight to the results, big jobs
# go via a 'waiting' page which we skip past if we get it
job_id = None
try:
# we see this with big jobs
result_table_url = follow(
"http://www.bioinformatics.leeds.ac.uk/~andy/betaBarrel/AACompPred/tmp/tmp_output.*.html"
)
job_id = result_table_url.split('tmp_output')[-1:][0].split('.')[0]
except:
# small jobs take us straight to the html results table
pass
# parse the job_id from the url, since due to a bug in
# TMB-HUNT the link on the results page from large jobs is wrong
if not job_id: job_id = \
follow("Full results").split('/')[-1:][0].split('.')[0]
log_stderr(
"# TMB-HUNT(web) job_id is: %s <http://www.bioinformatics.leeds.ac.uk/~andy/betaBarrel/AACompPred/tmp/tmp_output%s.html>"
% (job_id, job_id))
# polling until TMB-HUNT finishes
# TMB-HUNT advises that 4000 sequences take ~10 mins
# we poll a little faster than that
polltime = (len(proteins) * 0.1) + 2
while True:
log_stderr("# TMB-HUNT(web): waiting another %i sec ..." % (polltime))
time.sleep(polltime)
try:
go("http://bmbpcu36.leeds.ac.uk/~andy/betaBarrel/AACompPred/tmp/%s.txt"
% (job_id))
break
except:
polltime = polltime * 2
if polltime >= 7200: # 2 hours
log_stderr("# TMB-HUNT error: Taking too long.")
return
txt_out = show()
# write raw TMB-HUNT results
fh = open(out, 'w')
fh.write(txt_out)
fh.close()
return parse_tmbhunt(proteins, out)
