def main():
# Define data directory
datadir = os.environ.get('UFSOUTPUT_DIR')
postdir = os.environ.get('UFSPOST_DIR')
#flist = get_filelist(datadir,"*cice*nc")
flist = get_filelist(
datadir,
"ufs.s2s.C384_t025.20120701.cmeps_v0.5.1.cice.h2_06h.2012-07-01-21600_regrid_0p25x0p25.nc"
)
rlist = get_fileroot(flist)
dsets = open_filelist(flist, __file__)
uname = 'uvel_h'
vname = 'vvel_h'
vlist = ['uvel_h', 'vvel_h']
# Get target grid
ds_out = xr.open_dataset(os.environ.get('CICE_TARGET_GRID'))
dsin = dsets[0]
# Create target tripolar grids
txy = {'lon': ds_out['TLON'], 'lat': ds_out['TLAT']}
uxy = {'lon': ds_out['ULON'], 'lat': ds_out['ULAT']}
# Create input latlon grid
llxy = {'lon': dsets[0]['lon'], 'lat': dsets[0]['lat']}
# Create regridders
tregrid = create_regridder(llxy, txy, '0p25x0p25.to.TGRID')
uregrid = create_regridder(llxy, uxy, '0p25x0p25.to.UGRID')
# Get angle between tripole and N-S grids
angle = ds_out['ANGLE']
# Regrid from LL to tripole grid
ureg = uregrid(dsin[uname])
vreg = uregrid(dsin[vname])
# Rotate vector pairs
xrot, yrot = rotate_vector_cice5(ureg, vreg, "latlon", angle)
xrot.name = uname
yrot.name = vname
# Merge variables in single xarray object
dout = xrot.to_dataset(name=uname)
dout[vname] = yrot
dout.attrs['Conventions'] = "CF-1.7"
# Set data and metadata for output grid
x = dout['ULON']
y = dout['ULAT']
dout['y'] = y
dout['y'].attrs['long_name'] = "latitude"
dout['y'].attrs['units'] = "degrees_N"
dout['y'].attrs['cartesian_axis'] = "Y"
dout['x'] = x
dout['x'].attrs['long_name'] = "longitude"
dout['x'].attrs['units'] = "degrees_E"
dout['x'].attrs['cartesian_axis'] = "X"
# Copy over variable attributes
dout = copyattrs(dsin, dout, vlist)
# Fix NaN value for temperature
#dout['tmp'].attrs['_FillValue']=0.
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir + "/" + uname + "_" + vname + "_regrid_tripolar.nc")
# Delete xarray objects to avoid memory leak?
del dout
def main():
proc = psutil.Process()
# Define data directory
datadir = os.environ.get('UFSOUTPUT_DIR')
postdir = os.environ.get('UFSPOST_DIR')
gridfile = os.environ.get('MOM6_GRID_INFO')
flist = get_filelist(datadir,"*mom6.hmz*")
rlist = get_fileroot(flist)
dsets = open_filelist(flist,__file__)
print(flist)
# Get target grid
ds_out=xr.open_dataset(os.environ.get('MOM6_TARGET_GRID'))
# Get various coordinate combinations
xhyh,xhyq,xqyh,xqyq = parse_mom6static(dsmgrid)
print(xhyh,xhyq,xqyh,xqyq)
# Create regridders
xhyhregridder = create_regridder(xhyh,ds_out, "xhyh")
xhyqregridder = create_regridder(xhyq,ds_out, "xhyq")
xqyhregridder = create_regridder(xqyh,ds_out, "xqyh")
xqyqregridder = create_regridder(xqyq,ds_out, "xqyq")
# Iterate over open files
for i, dsin in enumerate(dsets):
print(flist[i])
# print(rlist[i])
vlist = list(dsin.data_vars.keys())
print(vlist)
glist = {vname:parse_mom6grid(dsin,vname) for vname in vlist}
print(glist)
# Create list of different variable types
xhyhlist = [vname for vname in vlist if "xh" in glist[vname] and "yh" in glist[vname]]
xqyhlist = [vname for vname in vlist if "xq" in glist[vname] and "yh" in glist[vname]]
xhyqlist = [vname for vname in vlist if "xh" in glist[vname] and "yq" in glist[vname]]
xqyqlist = [vname for vname in vlist if "xq" in glist[vname] and "yq" in glist[vname]]
olist = [vname for vname in vlist if "NA" in glist[vname]]
print("xhyh list is:",xhyhlist)
print("xhyq list is:",xhyqlist)
print("xqyh list is:",xqyhlist)
print("xqyq list is:",xqyqlist)
print("Non-grid vars:",olist)
# Regrid each variable type separately
rgflag = True
xhyhreg = [xhyhregridder(dsin[vname]) for vname in xhyhlist]
xhyqreg = [xhyqregridder(dsin[vname]) for vname in xhyqlist]
xqyhreg = [xqyhregridder(dsin[vname]) for vname in xqyhlist]
xqyqreg = [xqyqregridder(dsin[vname]) for vname in xqyqlist]
ngvars = [dsin[vname] for vname in olist]
# Merge variables in single xarray object
dout = xr.merge(xhyhreg+xhyqreg+xqyhreg+xqyqreg+ngvars)
dout.attrs['Conventions']="CF-1.7"
# Set data and metadata for output grid
x=dout['lon'][0,:]
y=dout['lat'][:,0]
dout['y']=y
dout['y'].attrs['long_name']="latitude"
dout['y'].attrs['units']="degrees_N"
dout['y'].attrs['cartesian_axis']="Y"
dout['x']=x
dout['x'].attrs['long_name']="longitude"
dout['x'].attrs['units']="degrees_E"
dout['x'].attrs['cartesian_axis']="X"
# Copy over variable attributes
dout = copyattrs(dsin, dout, xhyhlist)
dout = copyattrs(dsin, dout, xhyqlist)
dout = copyattrs(dsin, dout, xqyhlist)
dout = copyattrs(dsin, dout, xqyqlist)
dout = copyattrs(dsin, dout, olist)
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir+"/"+rlist[i]+"_regrid_0p25x0p25.nc")
# Delete xarray objects to avoid memory leak?
print('memory=',proc.memory_info().rss)
del dout
print('memory=',proc.memory_info().rss)
def main():
# Define data directory
datadir = os.environ.get('UFSOUTPUT_DIR')
postdir = os.environ.get('UFSPOST_DIR')
regriddir = os.environ.get('REGRID_DIR')
gspec = os.environ.get('MOM6_TARGET_GRID')
flist = get_filelist(
datadir,
"ufs.s2s.C384_t025.20120701.cmeps_v0.5.1.mom6.sfc._2012_07_01_03600_regrid_0p25x0p25.nc"
)
rlist = get_fileroot(flist)
dsets = open_filelist(flist, __file__)
dsin = dsets[0]
uname = 'SSU'
vname = 'SSV'
vlist = ['SSU', 'SSV']
# Get target grid
ds_stat = xr.open_dataset(regriddir + gspec)
# Get various coordinate combinations
xhyh, xhyq, xqyh, xqyq = parse_mom6static(ds_stat)
print(xhyh, xhyq, xqyh, xqyq)
# Create input latlon grid
llxy = {'lon': dsin['lon'], 'lat': dsin['lat']}
# Create regridders
xhyhregrid = create_regridder(llxy, xhyh, "0p25x0p25.to.xhyh", regriddir)
xhyqregrid = create_regridder(llxy, xhyq, "0p25x0p25.to.xhyq", regriddir)
xqyhregrid = create_regridder(llxy, xqyh, "0p25x0p25.to.xqyh", regriddir)
xqyqregrid = create_regridder(llxy, xqyq, "0p25x0p25.to.xqyq", regriddir)
xhyh_to_xqyh = create_regridder(xhyh, xqyh, "xhyh.to.xqyh", regriddir)
xhyh_to_xhyq = create_regridder(xhyh, xhyq, "xhyh.to.xhyq", regriddir)
# Get angles between tripole and N-S grids
sin_rot = ds_stat['sin_rot']
cos_rot = ds_stat['cos_rot']
# Regrid from LL to xhyh grid where rotation angle is defined
uct = xhyhregrid(dsin[uname])
vct = xhyhregrid(dsin[vname])
plt.contourf(dsin[uname][0, :, :])
plt.colorbar()
plt.show()
# Rotate vector pairs
xrot, yrot = rotate_vector_mom6(uct, vct, "latlon", sin_rot, cos_rot)
xrot.name = uname
yrot.name = vname
#Restagger
xout = xhyh_to_xqyh(xrot)
yout = xhyh_to_xhyq(yrot)
# Merge variables in single xarray object
dout = xout.to_dataset(name=uname)
dout[vname] = yout
dout.attrs['Conventions'] = "CF-1.7"
# Set data and metadata for output grid
x = ds_stat['geolon']
y = ds_stat['geolat']
dout['y'] = y
dout['y'].attrs['long_name'] = "latitude"
dout['y'].attrs['units'] = "degrees_N"
dout['y'].attrs['cartesian_axis'] = "Y"
dout['x'] = x
dout['x'].attrs['long_name'] = "longitude"
dout['x'].attrs['units'] = "degrees_E"
dout['x'].attrs['cartesian_axis'] = "X"
# Copy over variable attributes
dout = copyattrs(dsin, dout, vlist)
# Fix NaN value for temperature
#dout['tmp'].attrs['_FillValue']=0.
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir + "/" + uname + "_" + vname + "_regrid_tripolar.nc")
# Delete xarray objects to avoid memory leak?
del dout
def main():
# Define data directory
datadir = os.environ.get('UFSOUTPUT_DIR')
postdir = os.environ.get('UFSPOST_DIR')
flist = get_filelist(datadir,"*cice*nc")
#flist = get_filelist(datadir,"ufs.s2s.C384_t025.20120701.cmeps_v0.5.1.cice.h2_06h.2012-07-01-21600_regrid_0p25x0p25.nc")
rlist = get_fileroot(flist)
dsets = open_filelist(flist,__file__)
# Get target grid
regriddir = os.environ.get('REGRID_DIR')
target_grid = os.environ.get('CICE_TARGET_GRID')
ds_out=xr.open_dataset(regriddier+target_grid)
# Create target tripolar grids
txy = {'lon':dsets[0]['TLON'], 'lat':dsets[0]['TLAT']}
uxy = {'lon':dsets[0]['ULON'], 'lat':dsets[0]['ULAT']}
# Create input latlon grid
llxy = {'lon':ds_out[0]['lon'], 'lat':ds_out['lat']}
# Create regridders
tregrid = create_regridder(txy, llxy, 'TGRID.to.'+target_grid)
uregrid = create_regridder(uxy, llxy, 'UGRID.to.'target_grid)
# Get angle between tripole and N-S grids
angle = ds_out['ANGLE']
# Define pole types
# poles = {}
# poles['ds_in'] = np.array([ESMF.PoleKind.MONOPOLE, ESMF.PoleKind.MONOPOLE], np.int32)
# poles['ds_out'] = np.array([ESMF.PoleKind.MONOPOLE, ESMF.PoleKind.MONOPOLE], np.int32)
# Iterate over open files
for i, dsin in enumerate(dsets):
print(flist[i])
vlist = list(dsin.data_vars.keys())
glist = {vname:parse_utgrid(dsin,vname) for vname in vlist}
# Create list of different variable types
tlist = [vname for vname in vlist if "TLAT" in glist[vname]]
ulist = [vname for vname in vlist if "ULAT" in glist[vname]]
olist = [vname for vname in vlist if "NA" in glist[vname]]
print(ulist)
# Check ugrid variables for vector pairs
xlist = [vname for vname in ulist if "(x)" in dsin[vname].attrs['long_name']]
ylist = [vname for vname in ulist if "(y)" in dsin[vname].attrs['long_name']]
slist = [vname for vname in ulist if "(y)" not in dsin[vname].attrs['long_name'] and "(x)" not in dsin[vname].attrs['long_name']]
# Create list of vector pairs
# NOTE NOTE NOTE this relies on the vector pairs being written out in the propoer order!
vpairs = list(zip(xlist,ylist))
# Rotate vector pairs
xrot={}
yrot={}
for vpair in vpairs:
print(vpair)
print(dsin[vpair[0]], dsin[vpair[0]])
xrot[vpair[0]],yrot[vpair[1]] = rotate_vector_cice5(dsin[vpair[0]],dsin[str(vpair[1])], "tripole", angle)
xrot[vpair[0]].name=vpair[0]
yrot[vpair[1]].name=vpair[1]
# Regrid each variable type separately
tvars = [tregrid(dsin[vname]) for vname in tlist]
uvars = [uregrid(xrot[vname]) for vname in xlist]
vvars = [uregrid(yrot[vname]) for vname in ylist]
svars = [uregrid(dsin[vname]) for vname in slist]
ngvars = [dsin[vname] for vname in olist]
# Merge variables in single xarray object
dout = xr.merge(tvars+uvars+vvars+svars+ngvars)
dout.attrs['Conventions']="CF-1.7"
# Set data and metadata for output grid
x=dout['lon'][0,:]
y=dout['lat'][:,0]
dout['y']=y
dout['y'].attrs['long_name']="latitude"
dout['y'].attrs['units']="degrees_N"
dout['y'].attrs['cartesian_axis']="Y"
dout['x']=x
dout['x'].attrs['long_name']="longitude"
dout['x'].attrs['units']="degrees_E"
dout['x'].attrs['cartesian_axis']="X"
# Copy over variable attributes
dout = copyattrs(dsin, dout, tlist)
dout = copyattrs(dsin, dout, ulist)
dout = copyattrs(dsin, dout, olist)
# Fix NaN value for temperature
#dout['tmp'].attrs['_FillValue']=0.
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir+"/"+rlist[i]+"_regrid_0p25x0p25..nc")
# Delete xarray objects to avoid memory leak?
del dout
def main():
# Define data directory
print("Get environment variables.")
datadir = os.environ.get('UFSDATA_DIR')
postdir = os.environ.get('UFSPOST_DIR')
regriddir = os.environ.get('REGRID_DIR')
cice_grid = os.environ.get('CICE5_GRID')
ora_grid = os.environ.get('ORAS5_GRID')
print("End get environment variables.")
# Get grid information
print("Begin open files.")
flist = get_filelist(datadir, "*restart_ice.nc")
rlist = get_fileroot(flist)
dsets = open_filelist(flist, __file__)
dscice = xr.open_dataset(regriddir + cice_grid + ".nc")
dsora = xr.open_dataset(regriddir + ora_grid + ".nc")
print("End open files.")
# Define ORAS5 grid
print("Begin define grids.")
txy = {
'lat': dsora['nav_lat'].squeeze(),
'lon': dsora['nav_lon'].squeeze()
}
# Define MOM6 tracer grid
cicexy = {'lon': dscice['TLON'], 'lat': dscice['TLAT']}
print("End define grids.")
# Create regridders
print("Begin regridder creation.")
tregrid = create_regridder(txy, cicexy, 'ORAS5ice.to.' + cice_grid,
regriddir)
print("End regridder creation.")
# Set variable list
tlist = ['frld', 'hicif', 'hsnif', 'sist', 'tbif1', 'tbif2', 'tbif3']
# Iterate over open files
for i, dsin in enumerate(dsets):
print(flist[i])
# Regrid each variable type separately to the latlon grid
print("Begin regridding.")
tvars = [tregrid(dsin[vname]) for vname in tlist]
print("End regridding.")
# Merge variables in single xarray object
dout = xr.merge(tvars)
# Add CF convention information
dout.attrs['Conventions'] = "CF-1.7"
# Fix NaN value for temperature
#dout['tmp'].attrs['_FillValue']=0.
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir + "/" + rlist[i] + "_regrid_" + cice_grid +
".nc")
# Delete xarray objects to avoid memory leak?
del dout
def main():
# Set model output and postprocessing directories
datadir = os.environ.get('UFSOUTPUT_DIR')
postdir = os.environ.get('UFSPOST_DIR')
# Read in target grid
ds_out = xr.open_dataset(os.environ.get('SFCF_TARGET_GRID'))
# Get list of files to process
flist = get_filelist(datadir, "sfcf???.nc")
# Netcdf output from the model has poorly defined dimensions that causes
# an xarray error.
check_xrgrid(flist)
# Get list of file roots for naming output file later
rlist = get_fileroot(flist)
# Open the files as xarray datasets
dsets = open_filelist(flist, __file__)
# Iterate over open files
for i, dsin in enumerate(dsets):
print(dsin)
print(rlist[i])
# Get variables to process
vlist = list(dsin.data_vars.keys())
# Drop grid_xt and grid_yt from the list of variables to process
vlist.remove("grid_xt")
vlist.remove("grid_yt")
# Rename grid_yt->lat and grid_xt->lon for xESMF regridding
ds = dsin.rename({'grid_xt': 'lon', 'grid_yt': 'lat'})
# Convert lat-lon from radians to degrees
ds['lon'] = ds['lon'] * 180 / pi
ds['lat'] = ds['lat'] * 180 / pi
# Read in list of variables to process
din = [ds[vname] for vname in vlist]
print(din)
# Generate weights for regridding. Only needs to be done once.
if i == 0:
regridder = xe.Regridder(ds,
ds_out,
'bilinear',
reuse_weights=True,
periodic=True)
# Regrid each variable in the list
rgrd = [regridder(dx) for dx in din]
# Merge regridded variable list into a single dataset
dout = xr.merge(rgrd)
# Add global attribute for CF compliance
dout.attrs['Conventions'] = "CF-1.7"
# Set data and metadata for output grid
x = dout['lon'][0, :]
y = dout['lat'][:, 0]
dout['y'] = y
dout['y'].attrs['long_name'] = "latitude"
dout['y'].attrs['units'] = "degrees_N"
dout['y'].attrs['cartesian_axis'] = "Y"
dout['x'] = x
dout['x'].attrs['long_name'] = "longitude"
dout['x'].attrs['units'] = "degrees_E"
dout['x'].attrs['cartesian_axis'] = "X"
dout['lat'].attrs = dsin['grid_yt'].attrs
dout['lon'].attrs = dsin['grid_xt'].attrs
# Copy over variable attributes
for vname in vlist:
dout[vname].attrs = ds[vname].attrs
dout[vname].encoding['missing_value'] = ds[vname].encoding[
'missing_value']
dout[vname].encoding['_FillValue'] = ds[vname].encoding[
'_FillValue']
# Set unlimited dimension
dout.encoding['unlimited_dims'] = "time"
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir + "/" + rlist[i] + "_regrid_0p25x0p25.nc")
def main():
# Define some constants
# Number of input ice layers
nilyr1 = 3
# Number of CICE5 ice layers
nilyr2 = 7
# Number of snow layers in each ice category
nslyr = 1
# Number of ice categories in CICE5
ncat = 5
# Missing value
missing = 9.96920996838687e+36
# Category boundaries
c1 = 0.6445
c2 = 1.3914
c3 = 2.4702
c4 = 4.5673
cvals = [c1, c2, c3, c4]
# Salinity profile constants
saltmax = 3.2 # Maximum salinity at ice base
nsal = 0.407 # Profile constant
msal = 0.573 # Profile constant
# Density values
rhoi = 917.0 # Density of ice
rhos = 330.0 # Density of snow
cp_ice = 2106.0 # Specific heat of fresh ice
cp_ocn = 4218.0 # Specific heat of sea water
Lfresh = 3.34e5 # Latent heat of melting fresh ice
# Define intervals for interpolation to CICE5
rstart = 0.5 * (1 / nilyr2)
rend = 1 - rstart
tlevs = np.linspace(rstart, rend, nilyr2)
nilyr = tlevs
# Define data directory
print("Get environment variables.")
datadir = os.environ.get('UFSDATA_DIR')
postdir = os.environ.get('UFSPOST_DIR')
ora_file = os.environ.get('ORAS5_FILE')
print("End get environment variables.")
# Get list of files to process
print("Begin open files.")
flist = get_filelist(datadir, "*" + ora_file + ".nc")
rlist = get_fileroot(flist)
dsets = open_filelist(flist, __file__)
print("End open files.")
print(flist)
print(dsets)
# Iterate over open files
for i, dsin in enumerate(dsets):
print(flist[i])
# Rename input variables for consistency
part_size = 1. - dsin.frld.squeeze()
h_ice = dsin.hicif.squeeze()
h_sno = dsin.hsnif.squeeze()
t_surf = dsin.sist.squeeze()
t1 = dsin.tbif1.squeeze()
t2 = dsin.tbif2.squeeze()
t3 = dsin.tbif3.squeeze()
#
part_size.name = "part_size"
h_ice.name = "h_ice"
h_sno.name = "h_sno"
t_surf.name = "t_surf"
t1.name = "t1"
t2.name = "t2"
t3.name = "t3"
# Get dimensions if input data
ndims1 = part_size.shape
nj = part_size.nj.size
ni = part_size.ni.size
# Initalize dataarrays
dummy = xr.DataArray(np.zeros((nj, ni), dtype=np.double),
coords={
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['nj', 'ni'],
name="dummy var")
iceumask = xr.DataArray(np.full((nj, ni), 1, dtype=np.double),
coords={
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['nj', 'ni'],
name="iceumask")
aicen = xr.DataArray(np.zeros((ncat, nj, ni), dtype=np.double),
coords={
'ncat': range(0, ncat),
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['ncat', 'nj', 'ni'],
name="aicen")
vicen = xr.DataArray(np.zeros((ncat, nj, ni), dtype=np.double),
coords={
'ncat': range(0, ncat),
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['ncat', 'nj', 'ni'],
name="vicen")
vsnon = xr.DataArray(np.zeros((ncat, nj, ni), dtype=np.double),
coords={
'ncat': range(0, ncat),
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['ncat', 'nj', 'ni'],
name="vsnon")
Tsfcn = xr.DataArray(np.zeros((ncat, nj, ni), dtype=np.double),
coords={
'ncat': range(0, ncat),
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['ncat', 'nj', 'ni'],
name="Tsfcn")
tice = xr.DataArray(np.zeros((nilyr1, ncat, nj, ni), dtype=np.double),
coords={
'nilyr': np.linspace(0, 1, 3),
'ncat': range(0, ncat),
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['nilyr', 'ncat', 'nj', 'ni'],
name="tice")
Tin = xr.DataArray(np.zeros((nilyr2, ncat, nj, ni), dtype=np.double),
coords={
'nilyr': tlevs,
'ncat': range(0, ncat),
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['nilyr', 'ncat', 'nj', 'ni'],
name="Tin")
sice = xr.DataArray(np.zeros((nilyr2, ncat, nj, ni), dtype=np.double),
coords={
'nilyr': tlevs,
'ncat': range(0, ncat),
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['nilyr', 'ncat', 'nj', 'ni'],
name="sice")
qice = xr.DataArray(np.zeros((nilyr2, ncat, nj, ni), dtype=np.double),
coords={
'nilyr': tlevs,
'ncat': range(0, ncat),
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['nilyr', 'ncat', 'nj', 'ni'],
name="qice")
qsno = xr.DataArray(np.zeros((nslyr, ncat, nj, ni), dtype=np.double),
coords={
'nslyr': range(nslyr),
'ncat': range(0, ncat),
'nj': part_size.nj,
"ni": part_size.ni
},
dims=['nslyr', 'ncat', 'nj', 'ni'],
name="qsno")
print(vicen.shape)
print(h_ice.shape)
# Set ice fraction to zero where values are missing, based on surface temperature
ice_frac = part_size.where(h_ice > 0., other=0)
ice_frac.name = "ice_frac"
# Calculate ice fraction per category
aicen = ice_category_brdcst(ice_frac, h_ice, cvals)
aicen.name = 'aicen'
# Restore missing metadata
aicen['nj'] = part_size.nj
aicen['ni'] = part_size.ni
aicen['ncat'] = range(0, ncat)
# Calculate ice mask
iceumask = iceumask.where(aicen.sum(dim='ncat') > 1e-11, other=0)
# Calculate ice volume per category
for k in range(ncat):
vicen[k, :, :] = h_ice.where(h_ice > 0, other=0) * aicen[k, :, :]
vicen.name = "vicen"
# Calculate snow volume per category
for k in range(ncat):
vsnon[k, :, :] = h_sno.where(h_sno > 0, other=0) * aicen[k, :, :]
vsnon.name = "vsnon"
# Calculate Surface temperature per category
# Missing value for t_surf is 0, convert to Kelvin to avoid excessive negative values later
t_surf = t_surf.where(t_surf != 0, other=273.15)
Tsfcn = ice_category_brdcst(t_surf - 273.15, h_ice, cvals)
Tsfcn = Tsfcn.where(Tsfcn < 0, other=0)
Tsfcn.name = "Tsfcn"
# Calculate ice layer temperature per category and combine
tice[0, :, :, :] = ice_category_brdcst(
t1.where(t1 != 0, other=273.15) - 273.15, h_ice, cvals)
tice[1, :, :, :] = ice_category_brdcst(
t2.where(t2 != 0, other=273.15) - 273.15, h_ice, cvals)
tice[2, :, :, :] = ice_category_brdcst(
t3.where(t3 != 0, other=273.15) - 273.15, h_ice, cvals)
# Linearly interpolate from ORAS5 layers to CICE5
Tin = tice.interp(nilyr=tlevs)
Tin.name = "Tin"
Tin = Tin.where(Tin < 0, other=0)
print(Tin)
# Create salinity profile
zn = np.asarray([(k + 1 - 0.5) / nilyr2 for k in range(nilyr2)])
print((np.pi * zn**(nsal / (msal + zn))))
salinz = 0.5 * saltmax * (1 - np.cos(np.pi * zn**(nsal / (msal + zn))))
print(salinz)
for k in range(nilyr2):
sice[k, :, :, :] = salinz[k]
# Determine freezing point depression
Tmltz = salinz / (-18.48 + (0.01848 * salinz))
# Calculate ice layer enthalpy
# Don't allow ice temperature to exceed melting temperature
for k in range(nilyr2):
Tin[k, :, :, :] = Tin[k, :, :, :].where(Tin[k, :, :, :] < Tmltz[k],
other=Tmltz[k])
qice[k, :, :, :] = rhoi * cp_ice * Tin[k, :, :, :] - rhoi * Lfresh
qice[k, :, :, :] = qice[k, :, :, :].where(vicen > 0, other=0)
# Calculate snow layer enthalpy
qsno[0, :, :, :] = -rhos * (Lfresh - cp_ice * Tsfcn)
qsno[0, :, :, :] = qsno[0, :, :, :].where(vsnon > 0,
other=-rhos * Lfresh)
Trecon = (Lfresh + qsno / rhos) / cp_ice
Trecon = Trecon.where(vsnon > 0, 0)
Trecon.name = 'Trecon'
Trecon.to_netcdf("test.nc")
# Write output in expected format
qsno.to_netcdf("qsno_test.nc")
# Create list of variables initialized to zero
dlist = [
'uvel', 'vvel', 'scale_factor', 'coszen', 'swvdr', 'swvdf',
'swidr', 'swidf', 'strocnxT', 'strocnyT', 'stressp_1', 'stressp_2',
'stressp_3', 'stressp_4', 'stressm_1', 'stressm_2', 'stressm_3',
'stressm_4', 'stress12_1', 'stress12_2', 'stress12_3',
'stress12_4', 'frz_onset'
]
dout = xr.merge([aicen, vicen, vsnon, Tsfcn, iceumask, Tin])
dout['qsno001'] = qsno[0, :, :, :].squeeze()
print(np.linspace(0, 4, 1))
dout['ncat'] = np.linspace(0, 4, 5)
dout['nilyr'] = tlevs
for vname in dlist:
dout[vname] = dummy
for k in range(nilyr2):
dout['qice00' + str(k + 1)] = qice[k, :, :, :]
dout['sice00' + str(k + 1)] = sice[k, :, :, :]
dout.fillna(missing)
for vname in dout.data_vars:
dout[vname].encoding['_FillValue'] = missing
dout.to_netcdf("cice_20120101_test.qsno.nc", format='NETCDF3_CLASSIC')
def main():
# Define data directory
print("Get environment variables.")
datadir = os.environ.get('UFSDATA_DIR')
postdir = os.environ.get('UFSPOST_DIR')
regriddir = os.environ.get('REGRID_DIR')
mom_grid = os.environ.get('MOM6_GRID')
ora_grid = os.environ.get('ORAS5_GRID')
print("End get environment variables.")
# Get grid information
print("Begin open files.")
flist = get_filelist(datadir, "*restart.nc")
rlist = get_fileroot(flist)
dsets = open_filelist(flist, __file__)
dsmom = xr.open_dataset(regriddir + mom_grid + ".nc")
dsora = xr.open_dataset(regriddir + ora_grid + ".nc")
print("End open files.")
# Define ORAS5 grid
print("Begin define grids.")
txy = {'lat': dsora['gphit'].squeeze(), 'lon': dsora['glamt'].squeeze()}
# Define MOM6 tracer grid
momxy = {'lon': dsmom['geolon'], 'lat': dsmom['geolat']}
print("End define grids.")
# Create regridders
print("Begin regridder creation.")
tregrid = create_regridder(txy, momxy, 'ORAS5T.to.' + mom_grid, regriddir)
print("End regridder creation.")
# Set variable list
tlist = ['tn', 'sn']
# Iterate over open files
for i, dsin in enumerate(dsets):
print(flist[i])
# Regrid each variable type separately to the latlon grid
print("Begin regridding.")
tvars = [tregrid(dsin[vname]) for vname in tlist]
print("End regridding.")
# Merge variables in single xarray object
dout = xr.merge(tvars)
dout.attrs['Conventions'] = "CF-1.7"
# Set data and metadata for output grid
dout['geolat'] = dsmom['geolat']
dout['geolon'] = dsmom['geolon']
# Fix NaN value for temperature
#dout['tmp'].attrs['_FillValue']=0.
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir + "/" + rlist[i] + "_regrid_0p25x0p25.nc")
# Delete xarray objects to avoid memory leak?
del dout
def main():
# Define data directory
print("Get environment variables.")
datadir = os.environ.get('UFSDATA_DIR')
postdir = os.environ.get('UFSPOST_DIR')
regriddir = os.environ.get('REGRID_DIR')
ll_grid = os.environ.get('LL_GRID')
ora_grid = os.environ.get('ORAS5_GRID')
print("End get environment variables.")
# Get grid information
print("Begin open files.")
flist = get_filelist(datadir,"*restart.nc")
rlist = get_fileroot(flist)
dsets = open_filelist(flist,__file__)
dsll=xr.open_dataset(regriddir+ll_grid+".nc")
dsora = xr.open_dataset(regriddir+ora_grid)
print("End open files.")
# Define ORAS5 grid
print("Begin define grids.")
txy = {'lat':dsora['gphit'].squeeze(), 'lon':dsora['glamt'].squeeze()}
uxy = {'lat':dsora['gphiu'].squeeze(), 'lon':dsora['glamu'].squeeze()}
vxy = {'lat':dsora['gphiv'].squeeze(), 'lon':dsora['glamv'].squeeze()}
fxy = {'lat':dsora['gphif'].squeeze(), 'lon':dsora['glamf'].squeeze()}
# Define latlon grid
llxy = {'lon':dsll['lon'], 'lat':dsll['lat']}
print("End define grids.")
# Create regridders
print("Begin regridder creation.")
tregrid = create_regridder(txy, llxy, 'ORAS5T.to.'+ll_grid,regriddir)
uregrid = create_regridder(uxy, llxy, 'ORAS5U.to.'+ll_grid,regriddir)
vregrid = create_regridder(vxy, llxy, 'ORAS5V.to.'+ll_grid,regriddir)
fregrid = create_regridder(fxy, llxy, 'ORAS5F.to.'+ll_grid,regriddir)
print("End regridder creation.")
# Get angles between tripole and N-S grids
print("Begin read grid angles.")
cosu = dsora['cosu']
sinu = dsora['sinu']
cost = dsora['cost']
sint = dsora['sint']
cosv = dsora['cosv']
sinv = dsora['sinv']
cosf = dsora['cosf']
sinf = dsora['sinf']
print("End read grid angles.")
# Iterate over open files
for i, dsin in enumerate(dsets):
print(flist[i])
# Create list of variables pairs
vpair = ['un','vn']
tlist = ['tn','sn']
# Rotate vector pairs
print("Begin vector rotation.")
print(dsin[vpair[0]], dsin[vpair[1]])
xrot,yrot = rotate_vector_oras5(dsin[vpair[0]],dsin[str(vpair[1])], "tripole", sinu, cosu)
xrot.name=vpair[0]
yrot.name=vpair[1]
print("End vector rotation.")
# Regrid each variable type separately to the latlon grid
print("Begin regridding.")
tvars = [tregrid(dsin[vname]) for vname in tlist]
uvars = uregrid(xrot)
vvars = uregrid(yrot)
print("End regridding.")
# Merge variables in single xarray object
dout = xr.merge(tvars+uvars+vvars)
dout.attrs['Conventions']="CF-1.7"
# Set data and metadata for output grid
x=llxy['lon'][0,:]
y=llxy['lat'][:,0]
dout['y']=y
dout['y'].attrs['long_name']="latitude"
dout['y'].attrs['units']="degrees_N"
dout['y'].attrs['cartesian_axis']="Y"
dout['x']=x
dout['x'].attrs['long_name']="longitude"
dout['x'].attrs['units']="degrees_E"
dout['x'].attrs['cartesian_axis']="X"
# Fix NaN value for temperature
#dout['tmp'].attrs['_FillValue']=0.
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir+"/"+rlist[i]+"_regrid_0p25x0p25.nc")
# Delete xarray objects to avoid memory leak?
del dout
def main():
# Define data directory
datadir = os.environ.get('INPUT_DIR')
postdir = os.environ.get('INPUT_DIR')
regriddir = os.environ.get('REGRID_DIR')
gspec = os.environ.get('MOM6_TARGET_GRID')
flist = get_filelist(datadir,"oras5_MOM6_IC_UV_v1.nc")
dsets = open_filelist(flist,__file__)
uname = 'u'
vname = 'v'
vlist = ['u','v']
# Get target grid
ds_stat=xr.open_dataset(regriddir+gspec)
# Get various coordinate combinations
xhyh,xhyq,xqyh,xqyq = parse_mom6static(ds_stat)
print(xhyh,xhyq,xqyh,xqyq)
# Create input latlon grid
llxy = {'lon':dsets[0]['xt_ocean'], 'lat':dsets[0]['yt_ocean']}
# Create regridders
# ORAS5 latlon to MOM6 Ct grid
xhyhregrid = create_regridder(llxy, xhyh, "0p25x0p25.to.xhyh", regriddir)
#MOM6 Ct grid to U
xhyh_to_xqyh = create_regridder(xhyh, xqyh, "xhyh.to.xqyh", regriddir)
# MOM6 Ct grid to V
xhyh_to_xhyq = create_regridder(xhyh, xhyq, "xhyh.to.xhyq", regriddir)
# Get angles between MOM6 tripole and N-S grids
sin_rot = ds_stat['sin_rot']
cos_rot = ds_stat['cos_rot']
# Regrid from LL to xhyh grid where rotation angle is defined
#plt.contourf(usets[0][uname][0,0,:,:])
#plt.colorbar()
#plt.show()
uct = xhyhregrid(dsets[0][uname])
vct = xhyhregrid(dsets[0][vname])
#plt.contourf(uct[0,0,:,:])
#plt.colorbar()
#plt.show()
# Rotate vector pairs
xrot,yrot = rotate_vector_mom6(uct, vct, "latlon", sin_rot, cos_rot)
xrot.name=uname
yrot.name=vname
# Regrid from Ct to staggered U and V
xout = xhyh_to_xqyh(xrot)
yout = xhyh_to_xhyq(yrot)
# Merge variables in single xarray object
dout = xout.to_dataset(name=uname)
dout[vname]=yout
dout.attrs['Conventions']="CF-1.7"
# Set data and metadata for output grid
x=ds_stat['geolon']
y=ds_stat['geolat']
dout['y']=y
dout['y'].attrs['long_name']="latitude"
dout['y'].attrs['units']="degrees_N"
dout['y'].attrs['cartesian_axis']="Y"
dout['x']=x
dout['x'].attrs['long_name']="longitude"
dout['x'].attrs['units']="degrees_E"
dout['x'].attrs['cartesian_axis']="X"
# Copy over variable attributes
#dout = copyattrs(usets[0], dout, ulist)
#dout = copyattrs(vsets[0], dout, vlist)
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir+"/ORAS5_"+uname+"_"+vname+"_to_MOM6_tripolar.nc")
# Delete xarray objects to avoid memory leak?
del dout
def main():
# Define data directory
datadir = os.environ.get('UFSOUTPUT_DIR')
postdir = os.environ.get('UFSPOST_DIR')
#flist = get_filelist(datadir,"*cice*nc")
flist = get_filelist(
datadir,
"ufs.s2s.C384_t025.20120701.cmeps_v0.5.1.cice.h2_06h.2012-07-01-21600.nc"
)
rlist = get_fileroot(flist)
dsets = open_filelist(flist, __file__)
# Get target grid
ds_out = xr.open_dataset(os.environ.get('CICE_TARGET_GRID'))
# Create tgrid
txy = {'lon': dsets[0]['TLON'], 'lat': dsets[0]['TLAT']}
uxy = {'lon': dsets[0]['ULON'], 'lat': dsets[0]['ULAT']}
# Create regridders
tregrid = create_regridder(txy, ds_out, 'TGRID')
uregrid = create_regridder(uxy, ds_out, 'UGRID')
# Get angle between tripole and N-S grids
angle = dsets[0]['ANGLE']
anglet = dsets[0]['ANGLET']
# Define pole types
# poles = {}
# poles['ds_in'] = np.array([ESMF.PoleKind.MONOPOLE, ESMF.PoleKind.MONOPOLE], np.int32)
# poles['ds_out'] = np.array([ESMF.PoleKind.MONOPOLE, ESMF.PoleKind.MONOPOLE], np.int32)
# Iterate over open files
for i, dsin in enumerate(dsets):
print(flist[i])
vlist = list(dsin.data_vars.keys())
glist = {vname: parse_utgrid(dsin, vname) for vname in vlist}
# Create list of different variable types
tlist = [vname for vname in vlist if "TLAT" in glist[vname]]
ulist = [vname for vname in vlist if "ULAT" in glist[vname]]
olist = [vname for vname in vlist if "NA" in glist[vname]]
print(ulist)
# Test rotation
uvel_h_rot, vvel_h_rot = rotate_vector_cice5(dsin['uvel_h'],
dsin['vvel_h'], "tripole",
angle)
utest = uregrid(uvel_h_rot)
vtest = uregrid(vvel_h_rot)
print(utest.shape)
#plt.contourf(utest[0,:,:])
#plt.show()
# Regrid each variable type separately
#tvars = [esmf_regrid(dsin[vname],txy,ds_out,poles,vname) for vname in tlist]
#uvars = [esmf_regrid(dsin[vname],uxy,ds_out,poles,vname) for vname in ulist]
tvars = [tregrid(dsin[vname]) for vname in tlist]
uvars = [uregrid(dsin[vname]) for vname in ulist]
ngvars = [dsin[vname] for vname in olist]
# Merge variables in single xarray object
dout = xr.merge(tvars + uvars + ngvars + utest + vtest)
dout.attrs['Conventions'] = "CF-1.7"
# Set data and metadata for output grid
x = dout['lon'][0, :]
y = dout['lat'][:, 0]
dout['y'] = y
dout['y'].attrs['long_name'] = "latitude"
dout['y'].attrs['units'] = "degrees_N"
dout['y'].attrs['cartesian_axis'] = "Y"
dout['x'] = x
dout['x'].attrs['long_name'] = "longitude"
dout['x'].attrs['units'] = "degrees_E"
dout['x'].attrs['cartesian_axis'] = "X"
# Copy over variable attributes
dout = copyattrs(dsin, dout, tlist)
dout = copyattrs(dsin, dout, ulist)
dout = copyattrs(dsin, dout, olist)
# Fix NaN value for temperature
#dout['tmp'].attrs['_FillValue']=0.
# Write output
if not os.path.exists(postdir):
os.makedirs(postdir)
dout.to_netcdf(postdir + "/" + rlist[i] + "_regrid_0p25x0p25.nc")
# Delete xarray objects to avoid memory leak?
del dout