def main():
data_path = env()
PATH_MODEL = '%s/processed_dataset/{}/{}/' % data_path
PATH_RELATIVE = '%s/relative_pose/{}' % data_path
models = [
os.path.normpath(p) for p in glob.glob(PATH_MODEL.format(dataset, '*'))
]
for model in models:
if not 'scene0224_00' in model:
if not 'scene0622_00' in model:
continue
objs = glob.glob('%s/*.obj' % model)
modelname = ('/').join(model.split('/')[-2:])
n = len(objs)
basename = [int(obji.split('/')[-1].split('.')[0]) for obji in objs]
output_folder = PATH_RELATIVE.format(modelname)
for i in range(n):
for j in range(i + 1, n):
output_file = '{}/{}_{}_super4pcs.txt'.format(
output_folder, basename[i], basename[j])
if not os.path.exists(output_file):
command = './Super4PCS -i %s %s %s -m %s' % (
objs[i], objs[j], param, output_file)
print(command)
os.system(command)
""" ./Super4PCS -i ../datasets/redwood/00021_0.obj ../datasets/redwood/00021_1.obj -o 0.7 -d 0.01 -t 1000 -n 200 -m super4pcs/00021_0_1.txt """
def main():
args = parse_args()
pid = args.pid
source = args.source
dataset = args.dataset
data_path = env()
PATH_MODEL='%s/processed_dataset/{}/{}/' % data_path
PATH_RELATIVE = '%s/relative_pose/{}' % data_path
models = [os.path.normpath(p) for p in glob.glob(PATH_MODEL.format(dataset, '*'))]
models.sort()
for model in models[args.pid::100]:
print(model)
objs = glob.glob('%s/*.mat' % model)
modelname = ('/').join(model.split('/')[-2:])
n = len(objs)
basename = [int(obji.split('/')[-1].split('.')[0]) for obji in objs]
output_folder = PATH_RELATIVE.format(modelname)
for i in range(n):
for j in range(i+1, n):
txt_file = '{}/{}_{}_super4pcs.txt'.format(output_folder, basename[i], basename[j])
mat_file = '{}/{}_{}_super4pcs.mat'.format(output_folder, basename[i], basename[j])
compute_sigma(objs[i], objs[j], txt_file, mat_file)
def parse_args():
parser = argparse.ArgumentParser(
description='Perform Transformation Synchronization')
parser.add_argument('--input_list',
type=str, default=None, help='list of input .mat file')
parser.add_argument('--truncate',
action='store_true', default=None,
help='using truncated scheme {False}')
parser.add_argument('--reweight',
action='store_true', default=None,
help='using reweight scheme {True}')
parser.add_argument('--cheat',
action='store_true', default=False,
help='use ground truth labels (for debug)')
parser.add_argument('--label',
type=str, default=None,
help='path to .mat file generated, {classification/results/14.p}')
parser.add_argument('--output',
type=str, default='temp.mat',
help='output path, must be a .mat file {temp.mat}')
args = parser.parse_args()
if args.truncate is None:
args.truncated = False
if args.reweight is None:
args.reweighted = False
if args.truncate and args.reweight:
raise ValueError('both truncate and reweight schemes are specified')
if (not args.truncate) and (not args.reweight):
raise ValueError('need to specify exactly one between "truncate" and "reweight" ')
if args.input_list is None:
home = env()
args.input_list = 'input_list'
if args.reweight:
args.scheme = 'reweight'
if args.truncate:
args.scheme = 'truncate'
if args.input_list is None:
raise ValueError('input file needs to be specified')
return args
def main():
args = parse_args()
aerrs = []
terrs = []
with open(args.input_list, 'r') as fin:
mats = [line.strip() for line in fin.readlines()]
if args.label is not None:
with open(args.label, 'rb') as fin:
predictions = pickle.load(fin)
else:
predictions = {}
home = env()
PATH_MAT = '%s' % home
diffs = []
for mat_file in mats:
print(mat_file)
scene = mat_file.split('/')[-1].split('.')[0]
label_dict = predictions.get(scene, None)
if label_dict is not None:
indices = np.triu_indices(100, 1)
a = np.round(label_dict['predict'][indices])
b = np.round(label_dict['gt'][indices])
print(a.shape)
diff = abs(a - b)
diffs.append(diff)
print('%s: classifier error=%f' % (scene, np.mean(diff)))
label_dict = label_dict['predict']
aerr, terr = from_mat(mat_file, label_dict, args.cheat, args.scheme)
aerrs.append(aerr)
terrs.append(terr)
if len(diffs) > 0:
diffs = np.concatenate(diffs, axis=0)
print('classifier error=%f' % (np.mean(diffs)))
aerrs = np.concatenate(aerrs, axis=0)
terrs = np.concatenate(terrs, axis=0)
name = args.output
print('dumping to %s' % name)
sio.savemat('%s' % name, mdict={'aerrs': aerrs, 'terrs': terrs})
def main():
data_path = env()
PATH_MODEL = '%s/processed_dataset/{}/{}/' % data_path
PATH_RELATIVE = '%s/relative_pose/{}' % data_path
models = [
os.path.normpath(p) for p in glob.glob(PATH_MODEL.format(dataset, '*'))
]
make_dirs('%s/tasks' % dataset)
with open('%s/tasks' % dataset, 'w') as fout:
lines = []
for model in models:
objs = glob.glob('%s/*.obj' % model)
modelname = ('/').join(model.split('/')[-2:])
#import ipdb; ipdb.set_trace()
n = len(objs)
basename = [
int(obji.split('/')[-1].split('.')[0]) for obji in objs
]
output_folder = PATH_RELATIVE.format(modelname)
#'%s/relative_pose/%s' % (data_path, modelname)
pathlib.Path(output_folder).mkdir(exist_ok=True, parents=True)
for i in range(n):
for j in range(i + 1, n):
output_file = '{}/{}_{}_super4pcs.txt'.format(
output_folder, basename[i], basename[j])
command = './Super4PCS -i %s %s %s -m %s' % (
objs[i], objs[j], param, output_file)
#print(command)
lines.append(command)
#fout.write('%s\n' % command)
""" ./Super4PCS -i ../datasets/redwood/00021_0.obj ../datasets/redwood/00021_1.obj -o 0.7 -d 0.01 -t 1000 -n 200 -m super4pcs/00021_0_1.txt """
#np.random.shuffle(lines)
for line in lines:
fout.write('%s\n' % line)
DEFAULT_CONFIG = """
[journal]
editor = nano
basepath = ~/journals
filename = %Y/%m/%d/%NAME.md
template = ## %A, %d.%m.%Y (KW %W)
[notes]
editor = nano
basepath = ~/notes
filename = %NAME.md
template = ## %NAME
"""
config = read_config(
os.path.join(env('HOME'), '.config', 'notes', 'config.ini'),
DEFAULT_CONFIG)
### get arguments
appname = os.path.basename(sys.argv[0])
arguments = sys.argv[1:]
stringArgs = filterStringsFrom(arguments)
dateArgs = filterDatesFrom(arguments) # returns already parsed dates
optionArgs = filterOptionsFrom(arguments)
## Search in notes
# $ notes --find lel
# - search in 'notes' basedir for lel
# $ notes --find-all lel
import pymysql.cursors
import simplejson as json
from dotenv import find_dotenv, load_dotenv
from flask import Flask, request
from flask_cors import CORS
from neo4j import GraphDatabase, basic_auth
from neo4j.exceptions import Neo4jError
from pymysql import MySQLError
from data_manager import DataManager
from ml_prediction.model import Model
from util import env
# Load environment variables
load_dotenv(find_dotenv())
MYSQL_HOST = env('MYSQL_HOST')
MYSQL_USER = env('MYSQL_USER')
MYSQL_PWD = env('MYSQL_PWD')
MYSQL_DB = env('MYSQL_DB')
NEO4J_HOST = env('NEO4J_HOST')
NEO4J_USER = env('NEO4J_USER')
NEO4J_PWD = env('NEO4J_PWD')
# Configure Flask
app = Flask(__name__, static_folder='../build', static_url_path='/')
CORS(app, support_credentials=True)
# Configure MySQL
conn = pymysql.connect(host=MYSQL_HOST,
user=MYSQL_USER,
password=MYSQL_PWD,
import argparse
sys.path.append('../../')
from util import env, decompose, angular_distance_np, inverse, Reader
parser = argparse.ArgumentParser(
description='measure error of input')
parser.add_argument('--dataset',
type=str, help='redwood or scannet',
default='redwood')
parser.add_argument('--source',
type=str, help='fgr or super4pcs',
default='fgr')
args = parser.parse_args()
data_path = env()
dataset = args.dataset
source = args.source
with open('%s/experiments/%s.test' % (data_path, dataset), 'r') as fin:
lines = [line.strip() for line in fin.readlines()]
print(lines)
with open('%s/experiments/%s.train' % (data_path, dataset), 'r') as fin:
lines2 = [line.strip() for line in fin.readlines()]
lines = lines + lines2
terrs = []
aerrs = []
sigmas = []
import sys
import glob
import os
from sklearn.neighbors import NearestNeighbors as NN
import pathlib
sys.path.append('../../')
from util import inverse, env, angular_distance_np, decompose
import matplotlib.pyplot as plt
import scipy.io as sio
import argparse
import numpy as np
home = env()
def __get_label__(Rij, tij, Ti, Tj):
""" Measure Quality of Edge """
Ristar, tistar = decompose(Ti)
Rjstar, tjstar = decompose(Tj)
label = 0.0
err_R = angular_distance_np(Rij[np.newaxis, :, :],
Rjstar.dot(Ristar.T)[np.newaxis, :, :]).sum()
err_T = np.linalg.norm(Rij.dot(tistar) + tij - tjstar, 2)
if err_R < 30.0 and err_T < 0.2:
label = 1.0
else:
label = 0.0
return label
import glob
import sys
sys.path.append('../../')
from util import env
import numpy as np
path = '/media/xrhuang/DATA1/scannet'
models = glob.glob('%s/*' % path)
print(len(models))
np.random.shuffle(models)
split_point = (len(models) * 2) // 3
train_models = models[:split_point]
test_models = models[split_point:]
with open('%s/classification/train_list' % env(), 'w') as fout:
for model in train_models:
sceneid = model.split('/')[-1]
mats = glob.glob('%s/%s/*.mat' % (path, sceneid))
for mat in mats:
fout.write('%s\n' % mat)
with open('%s/classification/test_list' % env(), 'w') as fout:
for model in test_models:
sceneid = model.split('/')[-1]
mats = glob.glob('%s/%s/*.mat' % (path, sceneid))
for mat in mats:
fout.write('%s\n' % mat)