def test_helper_generateXml(self):
print 'Running %s ...' % getName()
sequenceListing = self.sequenceListingFixture.create_sequencelisting_instance()
self.sequenceListingFixture.create_sequence_instance(sequenceListing)
# TODO: generate some fancy sequences to check xml validation?
util.helper_generateXml(sequenceListing)
f = os.path.join(util.OUTPUT_DIR, '%s.xml' % sequenceListing.fileName)
self.assertTrue(util.validateDocumentWithSchema(f, util.XML_SCHEMA_PATH))
self.assertTrue(util.validateDocumentWithDtd(f, util.XML_DTD_PATH))
sequenceListing.delete()
def generateXml(request, pk):
sl = SequenceListing.objects.all().get(pk=pk)
sl.productionDate = timezone.now()
sl.save()
# generate xml and write it to file system
util.helper_generateXml(sl)
xmlFilePath = 'sequencelistings/output/%s.xml' % sl.fileName
logger.info('Generated xml seql at %s.' %xmlFilePath)
return render(request, 'sequencelistings/xmloutput.html',
{'filePath': xmlFilePath,
'location': util.OUTPUT_DIR,
'fileName': sl.fileName,
})
def test_helper_generateXml(self):
print 'Running %s ...' % getName()
sequenceListing = self.sequenceListingFixture.create_sequencelisting_instance(
)
self.sequenceListingFixture.create_sequence_instance(sequenceListing)
# TODO: generate some fancy sequences to check xml validation?
util.helper_generateXml(sequenceListing)
f = os.path.join(util.OUTPUT_DIR, '%s.xml' % sequenceListing.fileName)
res = util.validateDocumentWithSchema(f, util.XML_SCHEMA_PATH)
self.assertIsNone(res['parserError'])
self.assertIsNone(res['schemaError'])
self.assertTrue(util.validateDocumentWithDtd(f, util.XML_DTD_PATH))
sequenceListing.delete() # TODO: shouldn't be in teardown?
def generateXml(request, pk):
sl = SequenceListing.objects.all().get(pk=pk)
sl.productionDate = timezone.now()
sl.save()
# generate xml and write it to file system
util.helper_generateXml(sl)
xmlFilePath = 'sequencelistings/output/%s.xml' % sl.fileName
logger.info('Generated xml seql at %s.' % xmlFilePath)
return render(
request,
'sequencelistings/xmloutput.html',
{
'filePath': xmlFilePath,
'location': util.OUTPUT_DIR,
'fileName': sl.
fileName, # can be obtained in the template from sequencelisting!!!!
'sequencelisting': sl,
})