def toReportLab(cls, alphaBetaChl, reportlabconfig, make_graphs):
from reportlab.platypus import Paragraph, Table
localElements = []
localElements.append( Paragraph("Overview",reportlabconfig.styles['Heading3']) )
# Summary:
overviewTableData = [
["Max Conductance (gBar)", alphaBetaChl.conductance.rescale("mS/cm2") ],
["Reversal Potential", alphaBetaChl.reversalpotential.rescale("mV") ],
["Conductance Equation", "gBar * " + alphaBetaChl.eqn ],
]
localElements.append( Table(overviewTableData, style=reportlabconfig.listTableStyle) )
# Plot out the States:
for state,params in alphaBetaChl.statevars.iteritems():
localElements.append( Paragraph("State: %s"%state,reportlabconfig.styles['Heading3']) )
#Equations:
eqns = [
"alpha(V) = (A+BV)/(C+exp( (V+D)/E) )",
"beta(V) = (A+BV)/(C+exp( (V+D)/E) )",
]
for eqn in eqns:
localElements.append( Paragraph(eqn,reportlabconfig.styles['Normal']) )
# Alpha Beta
ReportLabTools.buildAlphaBetaTable( elements=localElements,
reportlabconfig=reportlabconfig,
title="Alpha", params=params[0] )
ReportLabTools.buildAlphaBetaTable( elements=localElements,
reportlabconfig=reportlabconfig,
title="Beta1", params=params[1] )
if make_graphs:
# Figures:
fig = cls.PlotStateCurveSummary(alphaBetaChl, state, figsize=(5,5))
localElements.append( reportlabconfig.saveMPLToRLImage(fig, "somestate") )
import pylab
pylab.close( fig.fig )
return localElements
def toReportLab(cls, alphaBetaBetaChl, reportlabconfig, make_graphs):
from reportlab.platypus import Paragraph, Table
localElements = []
localElements.append( Paragraph("Overview",reportlabconfig.styles['Heading3']) )
# Summary:
overviewTableData = [
["Channel Type", "AlphaBetaBetaChl"],
["Max Conductance (gBar)", alphaBetaBetaChl.conductance],
["Reversal Potential", alphaBetaBetaChl.reversalpotential],
["Conductance Equation", "gBar * " + alphaBetaBetaChl.eqn],
]
localElements.append( Table(overviewTableData, style=reportlabconfig.listTableStyle) )
# Plot out the States:
for state,params in alphaBetaBetaChl.statevars.iteritems():
localElements.append( Paragraph("State: %s"%state,reportlabconfig.styles['Heading3']) )
if make_graphs:
fig = Summarise_MM_AlphaBetaChannel.PlotStateCurveSummary(alphaBetaBetaChl, state, figsize=(5,5))
localElements.append( reportlabconfig.saveMPLToRLImage(fig, "somestate") )
localElements.append( Paragraph("Equations",reportlabconfig.styles['Heading4']) )
#Equations:
eqns = [
"beta2Threshold = %s"%alphaBetaBetaChl.beta2threshold,
"beta = beta1 if V less than beta2Threshold otherwise beta2",
"alpha(V) = (A+BV)/(C+exp( (V+D)/E) )",
"beta(V) = (A+BV)/(C+exp( (V+D)/E) )",
]
for eqn in eqns:
localElements.append( Paragraph(eqn,reportlabconfig.styles['Normal']) )
# Alpha Beta
ReportLabTools.buildAlphaBetaTable( elements=localElements,
reportlabconfig=reportlabconfig,
title="Alpha", params=params[0] )
ReportLabTools.buildAlphaBetaTable( elements=localElements,
reportlabconfig=reportlabconfig,
title="Beta1", params=params[1] )
ReportLabTools.buildAlphaBetaTable( elements=localElements,
reportlabconfig=reportlabconfig,
title="Beta2", params=params[2] )
return localElements
