def clipSeedWithWhiteMatter(seed, mask, outfile):
"""
This function takes in a seed image and a whiteMatter mask to clip the seed
"""
import SimpleITK as sitk
import os
from utilities import clipSeed
wmLabel = 1
return clipSeed(seed, mask, wmLabel, outfile, invert=True)
def clipSeedWithWhiteMatter(seed, mask, outfile):
"""
This function takes in a seed image and a whiteMatter mask to clip the seed
"""
import SimpleITK as sitk
import os
from utilities import clipSeed
wmLabel = 1
return clipSeed(seed, mask, wmLabel, outfile, invert=True)
def clipSeedWithVentricles(seed, label, outfile):
"""
This function takes in a seed image, and a BRAINSABC tissue segmentation image,
threasholds the CSF component (ie. label=4) and then clips the seed mask
"""
import SimpleITK as sitk
import os
from utilities import clipSeed
csfLabel = 4
return clipSeed(seed, label, csfLabel, outfile, invert=True)
def clipSeedWithVentricles(seed, label, outfile):
"""
This function takes in a seed image, and a BRAINSABC tissue segmentation image,
threasholds the CSF component (ie. label=4) and then clips the seed mask
"""
import SimpleITK as sitk
import os
from utilities import clipSeed
csfLabel = 4
return clipSeed(seed, label, csfLabel, outfile, invert=True)
