def learn(self, Xtrain, ytrain):
#ll=loglikihood(Xtrain,ytrain,beta)
#step=1
#eps=tolerance
self.weights = np.ones(Xtrain.shape[1])
p = utils.sigmoid(np.dot(Xtrain, self.weights)) #(500*9) * (9*1) = 500*1
#for i in range(20):
# p = logsig(X * w)
# w_old=w/np.sum(abs(w))
# P =
#x = np.multiply(P,(1-p))
#x = np.dot(Xtrain.T,x)
#self.weights = self.weights + np.dot(np.dot(np.linalg.inv(np.dot(x,Xtrain),Xtrain.T),(ytrain-p)))
# w = w + 0.1*inv(X' * diag(p .* (1 - p)) * X) * X' * (y - p)
# eps = sum(abs(w_old - w / sum(abs(w))))
# plot_logreg_figure(X0, X1, X, w)
# ll = get_log_likelihood(X, y, w)
# step = step + 1
#
# w = step_size * X.T * (y-p)
#print(p)
for i in range(500):
p = utils.sigmoid(np.dot(Xtrain, self.weights)) #(500*9) * (9*1) = 500*1
self.weights = self.weights + self.step_size * np.dot(Xtrain.T,(ytrain-p)) #(500*9) * (500*1) = (9*1)
def forward(self, x_t: np.float64):
self.t += 1
t = self.t
h = self.h[t-1]
self.input_gate[t] = sigmoid(np.dot(self.W_hi, h) +
np.dot(self.W_xi, x_t) + self.b_i)
self.forget_gate[t] = sigmoid(np.dot(self.W_hi, h) +
np.dot(self.W_xf, x_t) + self.b_f)
self.output_gate[t] = sigmoid(np.dot(self.W_ho, h) +
np.dot(self.W_xo, x_t) + self.b_o)
self.cell_update[t] = tanh(np.dot(self.W_hj, h) +
np.dot(self.W_xj, x_t) + self.b_j)
self.c[t] = self.input_gate[t] * self.cell_update[t] + \
self.forget_gate[t] * self.c[t-1]
self.ct[t] = tanh(self.c[t])
self.h[t] = self.output_gate[t] * self.ct[t]
self.x[t] = x_t
return self.h[t]
def learn(self, Xtrain, ytrain):
""" Learns using the traindata """
# Initial random weights ( Better if initialized using linear regression optimal wieghts)
#Xless = Xtrain[:,self.params['features']]
weights = np.dot(np.dot(np.linalg.inv(np.dot(Xtrain.T,Xtrain)), Xtrain.T),ytrain)
# w(t+1) = w(t) + eta * v
#pone = self.probabilityOfOne(self.weights, Xtrain[i])
p = utils.sigmoid(np.dot(Xtrain, weights))
tolerance = 0.1
#error = utils.crossentropy( Xtrain, ytrain, self.weights)
error = np.linalg.norm(np.subtract(ytrain, p))
err = np.linalg.norm(np.subtract(ytrain, p))
#err = 0
#soldweights =self.weights
while np.abs(error - err) < tolerance:
P = np.diag(p)
I = np.identity(P.shape[0])
#Hess_inv =-np.linalg.inv(np.dot(np.dot(np.dot(Xtrain.T,self.P),np.subtract(I,self.P)),Xtrain))
#Hess_inv=-np.linalg.inv(np.dot(np.dot(Xtrain.T,np.dot(P,(I-P))),Xtrain))
Hess_inv=-np.linalg.inv(np.dot(np.dot(Xtrain.T,np.dot(P,(I-P))),Xtrain))
First_Grad= np.dot(Xtrain.T, np.subtract(ytrain,p))#np.dot(Xtrain.T, np.subtract(ytrain, p))
#oldweights = self.weights
weights= weights - (np.dot(Hess_inv, First_Grad))
p = utils.sigmoid(np.dot(Xtrain, weights))
# error = utils.crossentropy(Xtrain, ytrain, self.weights)
err = np.linalg.norm(np.subtract(ytrain, p))
self.weights = weights
def learn(self, Xtrain, ytrain):
#ll=loglikihood(Xtrain,ytrain,beta)
#step=1
#eps=tolerance
self.weights = np.ones(Xtrain.shape[1])
p = utils.sigmoid(np.dot(Xtrain,
self.weights)) #(500*9) * (9*1) = 500*1
#for i in range(20):
# p = logsig(X * w)
# w_old=w/np.sum(abs(w))
# P =
#x = np.multiply(P,(1-p))
#x = np.dot(Xtrain.T,x)
#self.weights = self.weights + np.dot(np.dot(np.linalg.inv(np.dot(x,Xtrain),Xtrain.T),(ytrain-p)))
# w = w + 0.1*inv(X' * diag(p .* (1 - p)) * X) * X' * (y - p)
# eps = sum(abs(w_old - w / sum(abs(w))))
# plot_logreg_figure(X0, X1, X, w)
# ll = get_log_likelihood(X, y, w)
# step = step + 1
#
# w = step_size * X.T * (y-p)
#print(p)
for i in range(500):
p = utils.sigmoid(np.dot(Xtrain,
self.weights)) #(500*9) * (9*1) = 500*1
self.weights = self.weights + self.step_size * np.dot(
Xtrain.T, (ytrain - p)) #(500*9) * (500*1) = (9*1)
def learn(self, X, y):
w = np.array([randrange(-10, 10) for i in range(0, X.shape[1])])
epoch_error = []
alpha = .1
#self.regwgt = self.params['regwgt']
for epoch in range(0, 500):
small_p = utils.sigmoid(np.dot(X, w))
err_old = geterror(
[1 if x > .5 else 0 for x in utils.sigmoid(np.dot(X, w))], y)
if self.regularizer == 'basic':
w = w - alpha * (X.T.dot(np.subtract(small_p, y)))
elif self.regularizer == 'l2':
w = w - alpha * (X.T.dot(np.subtract(small_p, y)) +
2 * self.regwgt * w)
elif self.regularizer == 'l1':
w = self.prox_func(
w - alpha * (X.T.dot(np.subtract(small_p, y))),
self.regwgt)
elif self.regularizer == 'elasticNet':
w = self.prox_func(
w - alpha * (X.T.dot(np.subtract(small_p, y)) +
((self.lmbda1 * (1 - self.lmbda2))) * w),
self.lmbda1 * self.lmbda2)
err_new = geterror(
[1 if x > .5 else 0 for x in utils.sigmoid(np.dot(X, w))], y)
if err_new > err_old:
alpha = alpha * .1
epoch_error.append(err_new)
self.weights = w
def _costFunction(self, Xtrain, Ytrain, tempWeights):
#print Xtrain.shape,tempWeights.shape
#print np.dot(Xtrain,tempWeights).shape
return np.sum((
(-Ytrain) * np.log(utils.sigmoid(np.dot(Xtrain, tempWeights)))) -
((1 - Ytrain) *
(np.log(1 - utils.sigmoid(np.dot(Xtrain, tempWeights))))
)) / Xtrain.shape[0]
def runNN(self, inputs):
assert len(inputs) == NN.ni, 'incorrect number of inputs'
self.ai = np.tanh(inputs)
for j in range(NN.nh):
self.ah[j] = sigmoid(sum([self.ai[i] * self.wi[i][j] for i in range(NN.ni)]))
for k in range(NN.no):
self.ao[k] = sigmoid(sum([self.ah[j] * self.wo[j][k] for j in range(NN.nh)]))
return self.ao
def learn(self, Xtrain, ytrain):
Xshape = Xtrain.shape
regwgt = self.params['regwgt']
w = np.dot(np.dot(np.linalg.inv(np.dot(Xtrain.T, Xtrain)), Xtrain.T),
ytrain)
err = float('INF')
p = utils.sigmoid(np.dot(Xtrain, w))
tolerance = 0.1
numsamples = Xshape[0]
XX_n = np.dot(Xtrain.T, Xtrain) / numsamples
eeta = 1 / np.dot(2, np.linalg.norm((XX_n)))
stepsize = 0.1
while True:
P = np.diag(p)
I = np.identity(p.shape[0])
# weight update based on type of regularizer selected
if self.params['regularizer'] is 'l1':
gradient = np.dot(Xtrain.T, np.subtract(ytrain, p))
hessian_inv = -np.linalg.inv(
np.dot(np.dot(Xtrain.T, np.dot(P, (I - P))), Xtrain))
w = np.subtract(w, np.dot(hessian_inv, gradient))
w = utils.proximalOperator(w, regwgt, eeta)
elif self.params['regularizer'] is 'l2':
gradient = np.dot(Xtrain.T, np.subtract(
ytrain, p)) + regwgt * self.regularizer[1](w)
hessian_inv = -np.linalg.inv(
np.dot(np.dot(Xtrain.T, np.dot(P, (I - P))), Xtrain) +
regwgt)
w = np.subtract(w, stepsize * np.dot(hessian_inv, gradient))
elif self.params['regularizer'] is 'elastic':
gradient = np.dot(Xtrain.T, np.subtract(
ytrain, p)) + regwgt * self.regularizer[1](w)
hessian_inv = -np.linalg.inv(
np.dot(np.dot(Xtrain.T, np.dot(P, (I - P))), Xtrain) +
regwgt)
w = np.subtract(w, stepsize * np.dot(hessian_inv, gradient))
w = utils.proximalOperator(w, regwgt, eeta)
else:
gradient = np.dot(Xtrain.T, np.subtract(ytrain, p))
hessian_inv = -np.linalg.inv(
np.dot(np.dot(Xtrain.T, np.dot(P, (I - P))), Xtrain))
w = np.subtract(w, np.dot(hessian_inv, gradient))
p = utils.sigmoid(np.dot(Xtrain, w))
newerr = np.linalg.norm(np.subtract(ytrain, p))
if abs(err - newerr) < tolerance:
break
elif newerr - err > 0:
stepsize /= 10
err = newerr
self.weights = w
return self.weights
def predict(self, Xtest):
ah = utils.sigmoid(np.dot(Xtest, self.wi.T))
ah = np.hstack((np.ones((ah.shape[0], 1)), ah))
ytest = utils.sigmoid(np.dot(ah, self.wo.T))
ytest[ytest >= 0.5] = 1
ytest[ytest < 0.5] = 0
return ytest
def predict(self, Xtest):
hidden = utils.sigmoid(np.dot(Xtest, self.w_input.T))
ytest = utils.sigmoid(np.dot(hidden, self.w_output.T))
for i in range(len(ytest)):
if ytest[i] <= 0.5:
ytest[i] = 0
else:
ytest[i] = 1
return ytest
def update(self, inp, out):
nput = np.array(inp).reshape(self.ni, self.no)
h = utils.sigmoid(np.dot(self.wi, nput))
yhat = utils.sigmoid(np.dot(self.wo, h))
# y_i = np.array(out).reshape(1, 1)
# if we fail, then the result is not accurate
delta_i_first = -out / yhat + (1 - out) / (1 - yhat)
delta_i = np.dot(np.dot(delta_i_first, yhat), 1 - yhat)
# delta_i = np.dot(np.dot(self.dtransfer(np.dot(y_i, yhat)), yhat), 1 - yhat)
self.wo = self.wo - self.stepsize * np.dot(delta_i, h.T)
hadamard = self.wo.T * h * (1 - h)
self.wi = self.wi - self.stepsize * np.dot(delta_i * hadamard, nput.T)
def predict(self, Xtest):
diffSigmoid = np.vectorize(lambda x: utils.dsigmoid(x))
z1 = np.dot(self.wi, Xtest.T) #hL*n
a2 = np.array(
[utils.sigmoid(z1[:, x]) for x in xrange(Xtest.shape[0])]) #n*hL
a2 = np.insert(a2, 0, 1, axis=1)
z2 = np.dot(self.wo, a2.T) #k*n
a3f = np.array(
[utils.sigmoid(z2[:, x]) for x in xrange(Xtest.shape[0])]) #n*k
ytest = np.array([
1 if a3f[x, 1] > a3f[x, 0] else 0 for x in xrange(Xtest.shape[0])
])
return ytest
def predict(self, Xtest):
ylayer1 = np.dot(Xtest, self.wi)
hiddenOut = utils.sigmoid(ylayer1)
ylayer2 = hiddenOut.dot(self.wo)
ylayer2 = np.add(ylayer2, self.biasO)
predicted = utils.sigmoid(ylayer2)
ytest = np.zeros(Xtest.shape[0])
for index in range(Xtest.shape[0]):
if predicted[index, 0] > predicted[index, 1]:
ytest[index] = np.float64(0)
else:
ytest[index] = np.float64(1)
return ytest
def learn(self, Xtrain, ytrain):
""" Learns using the traindata """
# Initial random weights ( Better if initialized using linear regression optimal wieghts)
#Xless = Xtrain[:,self.params['features']]
weights = np.dot(np.dot(np.linalg.pinv(np.dot(Xtrain.T,Xtrain)), Xtrain.T),ytrain)
numsamples = Xtrain.shape[0]
numofEpochs = 10
# for epoch in range(numofEpochs):
# p = np.random.permutation(numsamples)
# for i in range(Xtrain.shape[0]):
# #error = np.dot(Xtrain,self.weights) - ytrain
# pone = self.probabilityOfOne(self.weights, Xtrain[i])
# # update weights
# prod = ytrain[p][i] - pone
# self.weights = self.weights - np.dot(np.dot(np.linalg.pinv( np.dot( (Xtrain[p] * pone) , np.dot( (np.identity(Xtrain.shape[1]) - pone), Xtrain[p] ) ) ), Xtrain[p].T), prod)
# w(t+1) = w(t) + eta * v
p = utils.sigmoid(np.dot(Xtrain, weights))
tolerance = 0.1
#error = utils.crossentropy( Xtrain, ytrain, self.weights)
error = np.linalg.norm(np.subtract(ytrain, p))
err = np.linalg.norm(np.subtract(ytrain, p))
#err = 0
#soldweights =self.weights
while np.abs(error - err) < tolerance:
P = np.diag(p)
I = np.identity(P.shape[0])
#Hess_inv =-np.linalg.inv(np.dot(np.dot(np.dot(Xtrain.T,self.P),np.subtract(I,self.P)),Xtrain))
#Hess_inv=-np.linalg.inv(np.dot(np.dot(Xtrain.T,np.dot(P,(I-P))),Xtrain))
Hess_inv=-np.linalg.inv(np.dot(np.dot(Xtrain.T,np.dot(P,(I-P))),Xtrain))
First_Grad= np.dot(Xtrain.T, np.subtract(ytrain,p)) - 2 *self.params['regwgt'] * utils.dl2(weights) - self.params['regwgt'] * utils.dl1(weights)
#np.dot(Xtrain.T, np.subtract(ytrain, p))
#oldweights = self.weights
weights= weights - (np.dot(Hess_inv, First_Grad))
p = utils.sigmoid(np.dot(Xtrain, weights))
# error = utils.crossentropy(Xtrain, ytrain, self.weights)
err = np.linalg.norm(np.subtract(ytrain, p))
self.weights = weights
def learn(self,Xtrain, ytrain):
Xshape = Xtrain.shape
regwgt = self.params['regwgt']
w = np.dot(np.dot(np.linalg.inv(np.dot(Xtrain.T,Xtrain)),Xtrain.T),ytrain)
err = float('INF')
p = utils.sigmoid(np.dot(Xtrain, w))
tolerance = 0.1
numsamples = Xshape[0]
XX_n = np.dot(Xtrain.T,Xtrain)/numsamples
eeta = 1 / np.dot(2, np.linalg.norm((XX_n)))
stepsize = 0.1
while True:
P = np.diag(p)
I = np.identity(p.shape[0])
# weight update based on type of regularizer selected
if self.params['regularizer'] is 'l1':
gradient = np.dot(Xtrain.T, np.subtract(ytrain, p))
hessian_inv = -np.linalg.inv(np.dot(np.dot (Xtrain.T, np.dot(P, (I - P))), Xtrain))
w = np.subtract(w, np.dot(hessian_inv, gradient))
w = utils.proximalOperator(w, regwgt, eeta)
elif self.params['regularizer'] is 'l2':
gradient = np.dot(Xtrain.T, np.subtract(ytrain, p))+ regwgt*self.regularizer[1](w)
hessian_inv = -np.linalg.inv(np.dot(np.dot (Xtrain.T, np.dot(P, (I - P))), Xtrain) + regwgt)
w = np.subtract(w, stepsize*np.dot(hessian_inv, gradient))
elif self.params['regularizer'] is 'elastic':
gradient = np.dot(Xtrain.T, np.subtract(ytrain, p)) + regwgt * self.regularizer[1](w)
hessian_inv = -np.linalg.inv(np.dot(np.dot(Xtrain.T, np.dot(P, (I - P))), Xtrain) + regwgt)
w = np.subtract(w, stepsize * np.dot(hessian_inv, gradient))
w = utils.proximalOperator(w, regwgt, eeta)
else:
gradient = np.dot(Xtrain.T, np.subtract(ytrain, p))
hessian_inv = -np.linalg.inv(np.dot(np.dot(Xtrain.T,np.dot(P,(I - P))), Xtrain))
w = np.subtract(w, np.dot(hessian_inv, gradient))
p = utils.sigmoid(np.dot(Xtrain, w))
newerr = np.linalg.norm(np.subtract(ytrain,p))
if abs(err - newerr)<tolerance:
break
elif newerr - err > 0:
stepsize /= 10
err = newerr
self.weights = w
return self.weights
def logit_cost(self, theta, X, y):
# print np.shape(X)
tt = X.shape[0]
theta = np.reshape(theta, (len(theta), 1))
y = np.reshape(y, (len(y), 1))
J = (1.0 / tt) * (
-np.transpose(y).dot(np.log(utils.sigmoid(X.dot(theta))))
- np.transpose(1 - y).dot(np.log(1 - utils.sigmoid(X.dot(theta))))
)
grad = (1.0 / tt) * (
-np.transpose(X).dot(y * np.divide(utils.sigmoid_der(X.dot(theta)), utils.sigmoid(X.dot(theta))))
+ np.transpose(X).dot((1 - y) * np.divide(utils.sigmoid_der(X.dot(theta)), 1 - utils.sigmoid(X.dot(theta))))
)
# When you write your own minimizers, you will also return a gradient here
# print 'X^T theta %f' %X.dot(theta)[0]
return {"loss": J, "gradient": grad}
def learn(self, X, y):
hls = self.params['nh']
w2 = np.zeros(shape=(X.shape[1], hls))
w1 = np.array([randrange(-100, 100) for i in range(0, hls)])
alpha = .001
for epoch in range(0, self.params['epochs']):
state = np.random.get_state()
np.random.shuffle(X)
np.random.set_state(state)
np.random.shuffle(y)
for t in range(0, np.shape(X)[0]):
y2 = utils.sigmoid(np.dot(X[t], w2))
y1 = self.sigmoid(np.dot(y2, w1.T))
del1 = y1 - y[t]
grad1 = np.dot(del1.T, y2)
del2 = np.array([(w1 * del1)[i] * y2[i] * (1 - y2[i])
for i in range(len(w1))])
grad2 = np.array([X[t] * i for i in del2]).T
w2 = w2 - alpha * grad2
w1 = w1 - alpha * grad1
self.wi = w2
self.wo = w1
def predict(self, Xtest):
"""
Use the parameters computed in self.learn to give predictions on new
observations.
"""
ytest = np.zeros(Xtest.shape[0], dtype=int)
if (self.params['kernel'] == 'hamming'):
print('')
Ktest = np.zeros([Xtest.shape[0], self.params['k']])
for i in range (0, Xtest.shape[0]):
for j in range (0, self.params['k']):
Ktest[i][j] = self.hamming(Xtest[i], self.kcentre[j])
else:
Ktest = np.dot(Xtest, self.kcentre.T)
### YOUR CODE HERE
sig = np.dot(Ktest, self.weights)
sig = utils.sigmoid(sig)
#print (sig)
sig = np.round(sig)
#print (sig)
for i in range (0, ytest.shape[0]):
ytest[i] = int(sig[i])
### END YOUR CODE
#print (ytest)
assert len(ytest) == Xtest.shape[0]
return ytest
def predict(self, Xtest):
ytest = np.dot(Xtest, self.weights)
ytest = utils.sigmoid(ytest)
ytest[ytest > 0.5] = 1
ytest[ytest < 0.5] = 0
ytest = np.squeeze(ytest)
return ytest
def predict(self, Xtest):
"""
Use the parameters computed in self.learn to give predictions on new
observations.
"""
### YOUR CODE HERE
value = utils.sigmoid(np.dot(Xtest, self.weights.T))
ytest = np.zeros(value.shape)
for i in range(value.shape[0]):
maxIndex = 0
maxValue = 0
for j in range(value.shape[1]):
if value[i][j]>maxValue:
maxIndex = j
maxValue = value[i][j]
ytest[i][maxIndex] = 1
for i in ytest:
print i
ytest = self.y_digit(ytest)
### END YOUR CODE
assert len(ytest) == Xtest.shape[0]
return ytest
def train(self, state, gangliaI, reward, T):
self.train_U = np.dot(self.w.T,
state) # # self.C2 * self.train_U + self.C1 *
self.train_I = utils.sigmoid(self.train_U)
self.error_out = gangliaI - self.train_I
self.w += T * reward * self.ETA * np.outer(
state, self.error_out) * self.train_I * (1. - self.train_I)
def logit_cost(self, theta, X, y):
"""
Compute cost for logistic regression using theta as the parameters.
"""
cost = 0.0
num_samples = X.shape[0]
### YOUR CODE HERE
for cnt in range(num_samples):
cost += -y[cnt] * np.log(utils.sigmoid(np.dot(theta, X[cnt, :])))
cost += -(1 - y[cnt]) * np.log(
1 - utils.sigmoid(np.dot(theta, X[cnt, :])))
### END YOUR CODE
return cost
def predict(self, Xtest):
ytest = np.zeros(Xtest.shape[0], dtype=int)
ytest = utils.sigmoid(np.dot(Xtest, self.weights)) >= 0.5
assert len(ytest) == Xtest.shape[0]
return ytest
def get_reparam_func(
target_image: torch.Tensor
) -> Callable[[torch.Tensor], torch.Tensor]:
minimum = target_image.min()
value_range = target_image.max() - minimum
return lambda x: (utilities.sigmoid(x) * value_range) + minimum
def predict(self, Xtest):
temp=self.weights[self.weights ==0]
print("The shape of temp is",temp.shape)
yvec = np.dot(Xtest, self.weights)
ytest=utils.sigmoid(yvec)
ytest[ytest >= 0.5] = 1
ytest[ytest < 0.5] = 0
return ytest
def logit_cost(self, theta, X, y):
#print np.shape(X)
tt = X.shape[0]
theta = np.reshape(theta, (len(theta), 1))
y = np.reshape(y, (len(y), 1))
J = (1. / tt) * (
-np.transpose(y).dot(np.log(utils.sigmoid(X.dot(theta)))) -
np.transpose(1 - y).dot(np.log(1 - utils.sigmoid(X.dot(theta)))))
grad = (1. / tt) * (
-np.transpose(X).dot(y * np.divide(utils.sigmoid_der(X.dot(theta)),
utils.sigmoid(X.dot(theta)))) +
np.transpose(X).dot(
(1 - y) * np.divide(utils.sigmoid_der(X.dot(theta)),
1 - utils.sigmoid(X.dot(theta)))))
#print 'X^T theta %f' %X.dot(theta)[0]
return {'loss': J, 'gradient': grad}
def logit_cost_grad(self, theta, X, y):
"""
Compute gradients of the cost with respect to theta.
"""
grad = np.zeros(len(theta))
y_hat = utils.sigmoid(np.dot(X, theta))
grad = np.dot(X.T, (y_hat - y)) / y.shape[0] + self.params['regwgt']*self.regularizer[1](theta)
return grad
def logit_cost_grad(self, theta, X, y):
"""
Compute gradients of the cost with respect to theta.
"""
grad = np.zeros(len(theta))
### YOUR CODE HERE
grad=np.dot((utils.sigmoid(np.dot(X, theta.T)) - y).T,X)+self.params['regwgt']*self.regularizer[1](theta)
#ask ta
return grad
def logit_cost(self, theta, X, y):
"""
Compute cost for logistic regression using theta as the parameters.
"""
cost = 0.0
y_hat = utils.sigmoid(np.dot(X, theta))
cost = (np.dot(-y.T, np.log(y_hat)) - np.dot((1 - y).T, np.log(1 - y_hat)))/X.shape[0] + self.params['regwgt']*self.regularizer[0](theta)
return cost
def update_knowledge(self, alpha, txn, bit_matrix):
"""Takes alpha and transition matrix (expects a 2d array)"""
# first convert state binary to int to get the row in coherence matrix
row_ptr = utilities.bool2int(self.knowledge_state)
# get the corresponding probabilites from the matrix
coh_prob_tx = txn[row_ptr]
ones_list = np.zeros(number_of_bits)
dissonance_list = []
disagreements = []
for index, curr_bit_state in enumerate(self.knowledge_state):
# now look for neighbors who disagree in this bit value
neigh_disagreement_count = self.count_dissimilar_neighbors(index)
# compute d as (# of neighbors disagree on bit/# of neighbors)
if len(self.neighbors) > 0:
d = neigh_disagreement_count / len(self.neighbors)
else:
d = 0
#TODO: Handle the viral parameter - in general, if d = 0 and viral is set,
#TODO: it should not be possible to make that transition
if d > 0:
dissonance = utilities.sigmoid(d, self.tau)
else:
dissonance = 0
dissonance_list.append(dissonance)
# keeping track of disagreement of bits/total neighbors
disagreements.append(d)
# transition probabilities given social pressure for moving to a state
# with a '1' at this bit
ones_list[index] = (1 -
dissonance if curr_bit_state else dissonance)
zeros_list = 1 - ones_list
tmp_soc_mat = ones_list * bit_matrix + zeros_list * (1 - bit_matrix)
# Probabilities for each state given social pressure
soc_prob_tx = np.prod(tmp_soc_mat, 1)
#TODO logs soc_prob_tx for each agent at each time step
probs = alpha * soc_prob_tx + (1 - alpha) * coh_prob_tx
self.next_state_probs = probs
self.soc_probs = soc_prob_tx
self.next_state = utilities.int2bool(
np.random.choice(range(2**number_of_bits), 1, p=probs)[0],
number_of_bits)
self.dissonance_lst = dissonance_list
self.state_disagreements = disagreements
return soc_prob_tx
def predict(self, Xtest):
#Xtest = Xtest2[:,:-1]
xvec = np.dot(Xtest, self.weights)
ytest = utils.sigmoid(xvec)
ytest[ytest >= 0.5] = 1
ytest[ytest < 0.5] = 0
print("Logistic Q3:"),
print time.time() - self.tlo
return ytest
def predict(self, Xtest):
xvec = np.dot(Xtest, self.weights)
ytest = utils.sigmoid(xvec)
ym = utils.mean(ytest)
ytest[ytest >= ym] = 1
ytest[ytest < ym] = 0
print("Logistic Q2:"),
print time.time() - self.tlo
return ytest
def fit(self, Xtrain, ytrain):
print("We're in fit in LogitReg")
self.weights = np.dot(np.dot(np.linalg.inv(np.dot(Xtrain.T,Xtrain)),Xtrain.T),ytrain)
self.xvec = np.dot(Xtrain, self.weights)#1000x1
self.p = utils.sigmoid(self.xvec) #1000x1
self.P = np.diagflat(self.p) #1000x1000
lambdaa = 0.01
for reps in range(self.reps):
self.weights -= (1/Xtrain.shape[0])*1*np.dot(np.dot(np.linalg.inv(np.dot(np.dot(np.dot(Xtrain.T,self.P),np.eye(np.size(Xtrain.shape[0]))-self.P),Xtrain)+lambdaa),Xtrain.T),(ytrain-self.p))
def learn(self, Xtrain, ytrain):
iterate = 10 #set num of iterations to perform descent
I = np.identity(Xtrain.shape[0])
#initialize the weights using linear regression
self.weights = np.dot(np.dot(np.linalg.inv(np.dot(Xtrain.T, Xtrain)), Xtrain.T), ytrain)
for i in range(iterate):
p = utils.sigmoid(np.dot(Xtrain, self.weights))
P = np.diag(p)
self.weights += np.dot(np.linalg.inv(np.dot(np.dot(Xtrain.T, P), np.dot(I-P, Xtrain)) + self.alpha*np.diag(np.absolute(self.weights))), np.dot(Xtrain.T, ytrain - p) + self.alpha*self.weights**2)
def learn(self, Xtrain, ytrain):
iterate = 10 #set num of iterations to perform descent
I = np.identity(Xtrain.shape[0])
#initialize the weights using linear regression
self.weights = np.dot(np.dot(np.linalg.inv(np.dot(Xtrain.T, Xtrain)), Xtrain.T), ytrain)
for i in range(iterate):
p = utils.sigmoid(np.dot(Xtrain, self.weights))
P = np.diag(p)
# Use Hessian or Not (for Madelon data set, Hessian is expensive to compute) First line is Newton, Second is Grad Desc
self.weights += np.dot(np.dot(np.linalg.inv(np.dot(np.dot(Xtrain.T, P), np.dot(I-P, Xtrain))), Xtrain.T), ytrain - p)
def learn(self, Xtrain, ytrain):
xvec = np.dot(Xtrain, self.weights)
p = utils.sigmoid(np.dot(Xtrain, self.weights)) #(500*9) * (9*1) = 500*1
P = np.diagflat(p)
for j in range(500):
for i in range(Xtrain.shape[0]):
xvec = np.dot(Xtrain[i], self.weights) #(1*9) * (9*1) = 500*1
delta = np.divide((2*ytrain[i]-1)*np.sqrt(np.square(xvec)+1)-xvec,np.square(xvec)+1)
delta = np.dot(Xtrain[i].T,delta)
first_term = np.divide((2*ytrain[i]-1)*xvec - np.sqrt(np.square(xvec)+1)-xvec,np.power(np.square(xvec)+1,3/2))
second_term = 2*xvec*np.divide((2*ytrain[i]-1)*np.sqrt(np.square(xvec)+1)-xvec,np.square(np.square(xvec)+1))
hessian = np.dot(Xtrain[i].T,Xtrain[i])*(first_term-second_term)
self.weights = self.weights + self.step_size * delta/hessian #(500*9) * (500*1) = (9*1)
def learn(self, Xtrain, ytrain, stepsize, iterate):
self.stepsize = stepsize
self.iterate = iterate
#I = np.identity(Xtrain.shape[0])
#initialize the weights using linear regression
self.weights = np.dot(np.dot(np.linalg.inv(np.dot(Xtrain.T, Xtrain)), Xtrain.T), ytrain)
for i in range(self.iterate):
p = utils.sigmoid(np.dot(Xtrain, self.weights))
#P = np.diag(p)
# Use Hessian or Not (for Madelon data set, Hessian is expensive to compute) First line is Newton, Second is Grad Desc
#self.weights += self.stepsize*np.dot(np.dot(np.linalg.inv(np.dot(np.dot(Xtrain.T, P), np.dot(I-P, Xtrain))), Xtrain.T), ytrain - p)
self.weights += -self.stepsize*np.dot(Xtrain.T, ytrain - p)
def main():
learning_rate = 0.6
beta = 0.7
inner_size = 128
topology = [INPUT_SIZE, inner_size, OUTPUT_SIZE]
activation = lambda x: sigmoid(x, beta)
activation_diff = lambda x: sigmoid_diff(x, beta)
network = NeuralNetwork(topology, activation, activation_diff)
for i in xrange(200):
network.training_session(DATA, 100, learning_rate)
network.test_effectiveness(DATA, 200)
def learn(self, Xtrain, ytrain):
self.weights = np.ones(Xtrain.shape[1])
centropy = utils.cross_entropy(Xtrain, ytrain, self.weights) + self.regloss(self.regularizer)
converged = False
iters = 0
while not converged:
output = utils.sigmoid(np.dot(Xtrain, self.weights))
error = output - ytrain
self.weights = self.weights - self.alpha * (np.dot(Xtrain.T, error) + self.reggradient(self.regularizer))
newcentropy = utils.cross_entropy(Xtrain, ytrain, self.weights) + self.regloss(self.regularizer)
if abs(centropy - newcentropy) <= self.ep:
converged = True
centropy = newcentropy
iters += 1
if iters > self.max_iter:
converged = True
def learn(self, Xtrain, ytrain):
self.weights = np.ones(Xtrain.shape[1])
centropy = utils.cross_entropy(Xtrain, ytrain, self.weights)
converged = False
iters = 0
while not converged:
output = utils.sigmoid(np.dot(Xtrain, self.weights))
# if use log-likelihood instead of cross-entropy, then take gradient, error = -error, updata rule is w = w + \delta(w)
error = output - ytrain
self.weights = self.weights - self.alpha * np.dot(Xtrain.T, error)
newcentropy = utils.cross_entropy(Xtrain, ytrain, self.weights)
if abs(centropy - newcentropy) <= self.ep:
converged = True
centropy = newcentropy
iters += 1
if iters > self.max_iter:
converged = True
def setUp(self): weights_in = -2 + np.random.rand(NN.ni, NN.nh) * 4 weights_out = -2 + np.random.rand(NN.nh, NN.no) * 4 self.net1 = NN() self.net1.wi = weights_in.copy() self.net1.wo = weights_out.copy() self.net2 = NN() self.net2.wi = weights_in.copy() self.net2.wo = weights_out.copy() inputs = -2 + np.random.rand(4) * 8 for i in range(NN.ni): self.net1.ai[i] = np.tanh(inputs[i]) for j in range(NN.nh): self.net1.ah[j] = sigmoid(sum([self.net1.ai[i] * self.net1.wi[i][j] for i in range(NN.ni)])) for k in range(NN.no): self.net1.ao[k] = sum([self.net1.ah[j] * self.net1.wo[j][k] for j in range(NN.nh)]) self.net1.ao = np.where(self.net1.ao > 0.5, 1.0, 0.0) self.net2.activate(inputs)
def constrain_bounded(self, which, lower, upper): """Set bounded constraints. Arguments --------- which -- np.array(dtype=int), or regular expression object or string upper -- (float) the upper bound on the constraint lower -- (float) the lower bound on the constraint """ matches = self.grep_param_names(which) assert not np.any(matches[:,None]==self.all_constrained_indices()), "Some indices are already constrained" assert lower < upper, "lower bound must be smaller than upper bound!" self.constrained_bounded_indices.append(matches) self.constrained_bounded_uppers.append(upper) self.constrained_bounded_lowers.append(lower) #check to ensure constraint is in place x = self.get_param() for i,xx in enumerate(x): if ((xx<=lower)|(xx>=upper)) & (i in matches): x[i] = sigmoid(xx)*(upper-lower) + lower self.set_param(x)
def expand_param(self,x): """ takes the vector x, which is then modified (by untying, reparameterising or inserting fixed values), and then call self.set_param""" #work out how many places are fixed, and where they are. tricky logic! Nfix_places = 0. if len(self.tied_indices): Nfix_places += np.hstack(self.tied_indices).size-len(self.tied_indices) if len(self.constrained_fixed_indices): Nfix_places += np.hstack(self.constrained_fixed_indices).size if Nfix_places: fix_places = np.hstack(self.constrained_fixed_indices+[t[1:] for t in self.tied_indices]) else: fix_places = [] free_places = np.setdiff1d(np.arange(Nfix_places+x.size,dtype=np.int),fix_places) #put the models values in the vector xx xx = np.zeros(Nfix_places+free_places.size,dtype=np.float64) xx[free_places] = x [np.put(xx,i,v) for i,v in zip(self.constrained_fixed_indices, self.constrained_fixed_values)] [np.put(xx,i,v) for i,v in [(t[1:],xx[t[0]]) for t in self.tied_indices] ] xx[self.constrained_positive_indices] = np.exp(xx[self.constrained_positive_indices]) xx[self.constrained_negative_indices] = -np.exp(xx[self.constrained_negative_indices]) [np.put(xx,i,low+sigmoid(xx[i])*(high-low)) for i,low,high in zip(self.constrained_bounded_indices, self.constrained_bounded_lowers, self.constrained_bounded_uppers)] self.set_param(xx)
def predict(self, Xtest, weights=None):
if weights is None:
weights = self.weights
p = utils.sigmoid(np.dot(Xtest, weights))
p = utils.threshold_probs(p)
return p
def predict(self, Xtest):
probs = utils.sigmoid(Xtest.dot(self.weights))
ytest = utils.threshold_probs(probs)
return ytest
def predict(self, Xtest):
# print self.weights
ytest = utils.sigmoid(np.dot(Xtest, self.weights))
ytest[ytest >= 0.5] = 1
ytest[ytest < 0.5] = 0
return ytest
def predict(self, Xtest):
pred = utils.sigmoid(np.dot(Xtest, self.weights))
pred[pred < .5] = 0
pred[pred > .5] = 1
return pred
def predict(self, Xtest):
p = utils.sigmoid(np.dot(Xtest, self.weights))
p = utils.threshold_probs(p)
return p