コード例 #1
0
ファイル: compactData.py プロジェクト: schism-/sculpstat
def add_brush_category_to_final(model_name):
    final_data = common.load_json(
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name[0] + "/final_data_3.json")

    on_surface = [
        'BLOB', 'CLAY', 'CLAY_STRIPS', 'CREASE', 'DRAW', 'FLATTEN', 'INFLATE',
        'LAYER', 'PINCH', 'SCRAPE', 'SMOOTH'
    ]

    global_brush = ['GRAB', 'SNAKE_HOOK']

    mask_brush = ['MASK']

    for step in final_data:
        print("%s / %d" % (step, len(final_data) - 1), )
        if final_data[step]["brush_data"]["brush_type"] in on_surface:
            final_data[step]["brush_data"]["brush_category"] = "ON_SURFACE"
        elif final_data[step]["brush_data"]["brush_type"] in global_brush:
            final_data[step]["brush_data"]["brush_category"] = "GLOBAL"
        elif final_data[step]["brush_data"]["brush_type"] in mask_brush:
            final_data[step]["brush_data"]["brush_category"] = "MASK"

    common.save_json(
        final_data,
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name[0] + "/final_data_3.json",
        compressed=False)
コード例 #2
0
ファイル: compactData.py プロジェクト: schism-/sculpstat
def add_brush_type_to_final(model_name):
    final_data = common.load_json(
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name[0] + "/final_data_3.json")
    brush_type_data = common.load_json("../steps/" + model_name[0] +
                                       "/brush_type_new.json")

    for step in final_data:
        print("%s / %d" % (step, len(final_data) - 1), )
        final_data[step]["brush_data"]["brush_type"] = brush_type_data[step]

    common.save_json(
        final_data,
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name[0] + "/final_data_3.json",
        compressed=False)
コード例 #3
0
ファイル: compactData.py プロジェクト: schism-/sculpstat
def final_data_flattening(model_name):
    '''
        Saves a flattened version of the brush data, duplicating the data for each point of the polyline.
    '''
    final_data = common.load_json(
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name[0] + "/final_data.json")

    flattened_data = []
    print("Flattening model %s" % model_name[0])
    for step in final_data:
        print("%s / %d" % (step, len(final_data) - 1), )
        step_data = final_data[step]["brush_data"]
        if step_data["valid"]:
            for idx, point in enumerate(step_data["paths"][0]):
                single_data = {
                    "step": int(step),
                    "projected_size": step_data["size"][0][0],
                    "unprojected_size": step_data["size"][0][1],
                    "position": point,
                    "pressure": step_data["pressure"][0][idx],
                    "mode": step_data["mode"][0],
                }
                flattened_data.append(single_data)

    save_path = "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/flattened/" + model_name[
        0] + "/"
    common.make_dirs(save_path)
    common.save_json(flattened_data,
                     save_path + "flattened_data.json",
                     compressed=False)
コード例 #4
0
ファイル: compactData.py プロジェクト: schism-/sculpstat
def add_brush_2d_pos_to_final(model_name):
    final_data = common.load_json(
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name[0] + "/final_data_2.json")
    brush_2d_pos_data = common.load_json("../steps/" + model_name[0] +
                                         "/brush_2d_pos.json")

    for step in final_data:
        print("%s / %d" % (step, len(final_data) - 1), ),
        if step in brush_2d_pos_data:
            final_data[step]["brush_data"]["brush_2d_pos"] = brush_2d_pos_data[
                step]["path"]
            final_data[step]["brush_data"]["lenght_2d"] = brush_2d_pos_data[
                step]["lenght"]
        elif final_data[step]["brush_data"]["valid"]:
            print("############# ERROR #############")

    common.save_json(
        final_data,
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name[0] + "/final_data_3.json",
        compressed=False)
コード例 #5
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    def generate_script(self, diff_no):
        # .: diff_no = 10      obj_1 = 9       obj_2 = 10
        bbox_diag = {
            "alien": 4.88411,
            "elder": 18.1198,
            "elf": 5.62413,
            "engineer": 2.03795,
            "explorer": 17.2768,
            "fighter": 2.0678,
            "gargoyle": 10.5912,
            "gorilla": 12.3074,
            "man": 4.38392,
            "merman": 4.90317,
            "monster": 6.87775,
            "ogre": 20.0907,
            "sage": 4.91853
        }

        #open mesh data
        md = common.load_json("../steps/" + self.model_name +
                              "/mesh_data.json")
        vertices_no = int(md[str(diff_no)]['vertices_no'])

        file_content = "<!DOCTYPE FilterScript>\n"  + \
                       "<FilterScript>\n"  + \
                       "<filter name=\"Hausdorff Distance\">\n"  + \
                       "<Param type=\"RichMesh\"    name=\"SampledMesh\"    value=\"1\" />\n"  + \
                       "<Param type=\"RichMesh\"    name=\"TargetMesh\"     value=\"0\" />\n"  + \
                       "<Param type=\"RichBool\"    name=\"SaveSample\"     value=\"true\" />\n"  + \
                       "<Param type=\"RichBool\"    name=\"SampleVert\"     value=\"true\" />\n"  + \
                       "<Param type=\"RichBool\"    name=\"SampleEdge\"     value=\"true\" />\n"  + \
                       "<Param type=\"RichBool\"    name=\"SampleFauxEdge\" value=\"false\"/>\n"  + \
                       "<Param type=\"RichBool\"    name=\"SampleFace\"     value=\"true\" />\n"  + \
                       "<Param type=\"RichInt\"     name=\"SampleNum\"      value=\"" + str(int(vertices_no * self.sample_perc)) + "\" />\n"  + \
                       "<Param type=\"RichAbsPerc\" name=\"MaxDist\"        value=\"" + str((bbox_diag[self.model_name] / 100.0) * 5.0) + "\" min=\"0\" max=\"" + str(bbox_diag[self.model_name]) + "\"/>\n"  + \
                       "</filter>\n"  + \
                       "<filter name=\"Select None\">\n"  + \
                       "<Param type=\"RichBool\"    name=\"allFaces\"       value=\"true\" />\n"  + \
                       "<Param type=\"RichBool\"    name=\"allVerts\"       value=\"true\" />\n"  + \
                       "</filter>\n"  + \
                       "<filter name=\"Change the current layer\">\n"  + \
                       "<Param type=\"RichMesh\"    name=\"mesh\"           value=\"1\" />\n"  + \
                       "</filter>\n"  + \
                       "</FilterScript>\n"

        script_fh = open(self.script_path, 'w')
        script_fh.write(file_content)
        script_fh.close()
コード例 #6
0
 def load_data(filename, is_brush=True):
     final_data = common.load_json(filename)
     id = 0
     loaded_data = [None, ] * len(final_data)
     for step in final_data:
         step_data = final_data[step]
         try:
             loaded_data[int(step_data["step_number"])] = Data(id,
                                                               int(step_data["step_number"]),
                                                               "b" if is_brush else "d",
                                                               step_data["brush_data" if is_brush else "diff_data"])
             id += 1
         except TypeError:
             continue
     loaded_data = [el for el in loaded_data if el]
     return loaded_data
コード例 #7
0
ファイル: compactData.py プロジェクト: schism-/sculpstat
def add_brush_2d_angle_to_final(model_name):
    final_data = common.load_json(
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name[0] + "/final_data_3.json")

    for step in final_data:
        print("%s / %d" % (step, len(final_data) - 1), )
        if final_data[step]["brush_data"]["valid"]:
            final_data[step]["brush_data"]["brush_2d_angles"] = get_2d_angles(
                final_data[step]["brush_data"])
            final_data[step]["brush_data"][
                "brush_2d_angles_filtered"] = get_2d_angles(
                    final_data[step]["brush_data"], True)

    common.save_json(
        final_data,
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name[0] + "/final_data_3.json",
        compressed=False)
コード例 #8
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    def visualize(self, show=False, save_image=True, prefix=""):
        load_dir = "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/clustering/" + self.model_name + "/"

        fh = open(load_dir + prefix + "_centroid_pos", 'rb')
        centroid_pos = np.load(fh)
        fh.close()

        fh = open(load_dir + prefix + "_labels", 'rb')
        labels = np.load(fh)
        fh.close()

        fh = open(load_dir + prefix + "_raw_data", 'rb')
        raw_data = np.load(fh)
        fh.close()

        cluster_timings = common.load_json(load_dir + prefix + "_times.json")

        noise = []
        for obj in self.data:
            noise.append(obj.time)

        max_time = -1
        for c in cluster_timings:
            for el in cluster_timings[c]:
                max_time = max(max_time, el)
                if el in noise:
                    noise.remove(el)

        for el in noise:
            max_time = max(max_time, el)

        fig2 = plt.figure(figsize=(22, 10), facecolor="white")
        cols = int(math.sqrt(len(cluster_timings) + 1))
        rows = ((len(cluster_timings) + 1)// cols) + 1
        for c_idx in cluster_timings:
            cl_time = np.array(cluster_timings[c_idx])

            print("%d%d%d" % (rows, cols, int(c_idx)))

            ax = fig2.add_subplot(rows, cols, int(c_idx))

            n, bin, patches = ax.hist(cl_time,
                                      bins=30,
                                      range=(0, max_time),
                                      color=plt.cm.spectral(float(int(c_idx)) / (len(cluster_timings) + 1)))

            plt.title("C%s [%d, m=%.2f, v=%.2f]" % (c_idx,
                                                    len(cl_time),
                                                    np.mean(cl_time),
                                                    np.std(cl_time))
            )

        ax = fig2.add_subplot(rows, cols, len(cluster_timings) + 1)
        n, bin, patches = ax.hist(noise,
                                  bins=30,
                                  range=(0, max_time),
                                  color=plt.cm.spectral(1.0))

        fig2.tight_layout()

        if save_image:
            root_images = "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/results/"
            common.make_dirs(root_images)
            plt.savefig(root_images + self.model_name + "_st-dbscan-" + prefix + "_times.png")

        fig = plt.figure(figsize=(22, 10), facecolor="white")
        plot_clustering_scatter(centroid_pos, labels, raw_data,
                                title="[%s] st-dbscan" % self.model_name,
                                fig=fig,
                                subplot_idx=111,
                                model_name=self.model_name,
                                save_image=save_image,
                                prefix=prefix)
        if show:
            plt.show()
コード例 #9
0
        "artist": "jw"
    },
    "ogre": {
        "technique": "subd",
        "artist": "jw"
    },
    "sage": {
        "technique": "subd",
        "artist": "jw"
    }
}

brush_types = {}

for model_name in data:
    mesh_data = common.load_json(data_dir + model_name + "/mesh_data.json")
    max_step_num = str(len(mesh_data.keys()) - 1)
    data[model_name]["faces_no"] = mesh_data[max_step_num]["faces_no"]

    final_data = common.load_json(final_data_dir + model_name +
                                  "/final_data_3.json")
    brush_no = 0
    for step in final_data:
        if final_data[step]["brush_data"]["valid"]:
            brush_no += final_data[step]["brush_data"]["brush_number"]
            if final_data[step]["brush_data"]["brush_type"] in brush_types:
                brush_types[final_data[step]["brush_data"]["brush_type"]] += 1
            else:
                brush_types[final_data[step]["brush_data"]["brush_type"]] = 1
    data[model_name]["brush_no"] = brush_no
コード例 #10
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    ax.scatter(X_red[:, force_idx[0]],
               -1.0 * X_red[:, force_idx[2]],
               X_red[:, force_idx[1]],
               c=labels,
               cmap=plt.cm.cool,
               s=c * 1000)
    ax.view_init(elev=0, azim=-90)
    plt.axis('equal')
    if title is not None:
        plt.title(title, size=17)


# Loading brush data
model_name = "monster"
json_array = common.load_json("../steps/" + model_name +
                              "/feature_vector.json")

modes = {}
for idx_l in range(len(json_array)):
    for idx_e in range(len(json_array[idx_l])):
        if idx_e != 2:
            json_array[idx_l][idx_e] = float(json_array[idx_l][idx_e])
        elif idx_e == 2:
            if json_array[idx_l][idx_e] in modes:
                json_array[idx_l][idx_e] = modes[json_array[idx_l][idx_e]]
            else:
                print("Adding %d for %s" %
                      (len(modes), json_array[idx_l][idx_e]))
                modes[json_array[idx_l][idx_e]] = len(modes)
                json_array[idx_l][idx_e] = modes[json_array[idx_l][idx_e]]
コード例 #11
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ファイル: time_series_test.py プロジェクト: schism-/sculpstat
  labels = []
  k = 0
  for step_idx in range(len(final_data)):
    if final_data[str(step_idx)]["valid"]:
      for i in range(final_data[str(step_idx)]["brush_data"]["brush_number"]):
        if time_serialized:
          ret_list.append([step_idx, final_data[str(step_idx)]["brush_data"][attribute][i]])
        else:
          ret_list.append(final_data[str(step_idx)]["brush_data"][attribute][i])
        labels.append(k)
    k += 1
  return ret_list, labels

# Loading brush data
model_name = "ogre"
json_array = common.load_json("../steps/" + model_name + "/final_data.json")

centroid, centroid_label = filter_brush_attribute(json_array, "centroids", False)
centroid_dist = []
for point_idx in range(1, len(centroid)):
    dist = np.linalg.norm(np.array(centroid[point_idx]) - np.array(centroid[point_idx - 1]))
    centroid_dist.append(dist)

for attr_name in ["lenghts", "size", "unp_size", "centroid_dist"]:
    if attr_name == "size" or attr_name == "unp_size":
        attr_data, labels = filter_brush_attribute(json_array, "size", False)
    elif attr_name == "centroid_dist":
        attr_data, labels = centroid_dist, centroid_label
    else:
        attr_data, labels = filter_brush_attribute(json_array, attr_name, False)
コード例 #12
0
ファイル: convertBrushData.py プロジェクト: schism-/sculpstat
model_names = [
    "alien", "elder", "elf", "engineer", "explorer", "fighter", "gargoyle",
    "gorilla", "man", "merman", "monster", "ogre", "sage"
]

on_surface = [
    'BLOB', 'CLAY', 'CLAY_STRIPS', 'CREASE', 'DRAW', 'FLATTEN', 'INFLATE',
    'LAYER', 'PINCH', 'SCRAPE', 'SMOOTH', 'MASK'
]

global_brush = ['GRAB', 'SNAKE_HOOK']

for model_name in model_names:
    print("Analyzing model " + model_name)
    fd_json = common.load_json(brush_dir + model_name + "/final_data_3.json")

    final_list = []
    final_list_flipped = []
    for k in range(len(fd_json)):
        print(str(k) + "/" + str(len(fd_json)), )
        bd_json = fd_json[str(k)]["brush_data"]
        if bd_json["valid"]:
            points = bd_json["paths"][0]
            flattened_points = []
            flattened_points_flipped = []
            flattened_indices = []
            for idx, p in enumerate(points):
                flattened_points += p
                flattened_points_flipped += [-p[0], p[1], p[2]]
                if idx < len(points) - 1:
コード例 #13
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    models = [
        ["alien",    2216],
        ["elder",    3119],
        ["elf",      4307],
        ["engineer",  987],
        ["explorer", 1858],
        ["fighter",  1608],
        ["gargoyle", 1058],
        ["gorilla",  2719],
        ["man",      1580],
        ["merman",   2619],
        ["monster", 967],
        ["ogre", 1720],
        ["sage",     2136]
    ]
    '''
    for model_name, max_step in models:
        print("saving data for " + model_name)
        bd = BrushData(model_name, max_step)
        type_json = {}
        for k in range(max_step + 1):
            type_json[str(k)] = bd.load_brush_type(k)
        common.save_json(type_json, "../steps/" + model_name + "/brush_type_new.json")
    '''
    for model_name, step in models:
        bt = common.load_json("../steps/" + model_name + "/brush_type_new.json")
        bd = BrushData(model_name, step)
        type = bd.load_brush_type(step)
        bt[str(step)] = type
        common.save_json(bt, "../steps/" + model_name + "/brush_type_new.json")
コード例 #14
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    "sage": {
        0: [-1, 0],
        80: [0, 1],
        1267: [2, 3],
        1525: [3, 4],
        1798: [4, 3],
        1802: [3, 4],
        558: [1, 2]
    },
    "man": {
        0: [-1, 0],
        16: [3, 2],
        658: [2, 3],
        1174: [3, 4],
        9: [0, 1],
        10: [1, 2],
        11: [2, 3]
    }
}

for model_name in subd_steps:
    bd = common.load_json(
        "/Users/christian/Desktop/Ph.D./sculptAnalysis_final_data/complete/" +
        model_name + "/final_data_3.json")
    for step in subd_steps[model_name]:
        for k in [-1, 0, 1]:
            if str(step + k) in bd:
                print(model_name, step + k,
                      bd[str(step + k)]["distance_data"]["distance_mean"])
        print()
    print("--------")
コード例 #15
0
ファイル: compactData.py プロジェクト: schism-/sculpstat
def brush_flattening(model_names):
    '''
        Saves a flattened version of the brush data (for Weka analysis and such)
    '''

    feature_vectors = {}

    for model_name in model_names:
        brush_data = common.load_json("../steps/" + model_name[0] +
                                      "/brush_data.json")
        feature_vectors[model_name[0]] = []
        for step_idx in brush_data:
            print("Model %s | Step %s" % (model_name[0], step_idx))
            data = brush_data[str(step_idx)]
            if data["valid"]:
                sizes = float(data["size"][0])
                unp_sizes = float(data["size"][1])
                modes = data["mode"]
                b_number = data["brush_number"]
                path_lenghts = 0
                for i in range(b_number + 1):
                    path_lenghts = float(data["lenghts"][i])
                    path_centroids = data["centroids"][i]

                    obb_center = [None, None, None]
                    obb_center[0] = data["obboxes"][i]["bbox_center"][0]
                    obb_center[1] = data["obboxes"][i]["bbox_center"][1]
                    obb_center[2] = data["obboxes"][i]["bbox_center"][2]

                    obb_dimensions = [None, None, None]
                    obb_dimensions[0] = data["obboxes"][i]["bbox_ext"][0]
                    obb_dimensions[1] = data["obboxes"][i]["bbox_ext"][1]
                    obb_dimensions[2] = data["obboxes"][i]["bbox_ext"][2]
                    break

                pressure_mean = data["pressure_mean"]
                pressure_variance = data["pressure_variance"]
                pressure_skewness = data["pressure_skewness"]
                pressure_curtosis = data["pressure_curtosis"]

                path_mean = data["path_mean"]
                path_variance = data["path_variance"]
                path_skewness = data["path_skewness"]
                path_curtosis = data["path_curtosis"]

                feature_vectors[model_name[0]].append([
                    sizes, unp_sizes, modes[0], path_lenghts,
                    path_centroids[0], path_centroids[1], path_centroids[2],
                    obb_center[0], obb_center[1], obb_center[2],
                    obb_dimensions[0], obb_dimensions[1], obb_dimensions[2],
                    pressure_mean, pressure_variance, pressure_skewness,
                    pressure_curtosis, path_mean, path_variance, path_skewness,
                    path_curtosis,
                    int(step_idx)
                ])

        common.save_json(feature_vectors[model_name[0]],
                         "../steps/" + model_name[0] + "/feature_vector.json",
                         compressed=False)

        out = open("../steps/" + model_name[0] + "/feature_vector.csv", "w")
        out.write('size,unp_size,mode,lenght,' + \
                  'centroid_x,centroid_y,centroid_z,' + \
                  'obb_cen_x,obb_cen_y,obb_cen_z,'+ \
                  'obb_dim_x,obb_dim_y,obb_dim_z,'+ \
                  'pressure_mean,pressure_variance,pressure_skewness,pressure_curtosis,'+ \
                  'path_mean,path_variance,path_skewness,path_curtosis,'+ \
                  'step\n')
        for line in feature_vectors[model_name[0]]:
            l = ','.join([str(el) for el in line])
            out.write(l + '\n')
        out.close()
コード例 #16
0
ファイル: compactData.py プロジェクト: schism-/sculpstat
def generate_final_data(model_names):
    """
        Produces the final JSON, with all the data extracted from brush stroke and diff

        For each step, it saves:

        final_data = {
            diff_data = {
                "added_vertices"
                "deleted_vertices"
                "added_faces"
                "deleted_faces"
                "diff_added_centroids"
                "diff_added_bbox"
                "diff_deleted_centroids"
                "diff_deleted_bbox"
                "added_mean"
                "added_variance"
                "added_skewness"
                "added_curtosis"
                "deleted_mean"
                "deleted_variance"
                "deleted_skewness"
                "deleted_curtosis"
            }

            brush_data = {
                "valid"
                "size"
                "mode"
                "brush_number"
                "paths"
                "centroid"
                "obboxes"
                "aabboxes"
                "lenghts"
                "pressure"
            }

            distance_data = {
                "distance_mean"
                "distance_variance"
                "distance_skewness"
                "distance_curtosis"
            }
        }
    """

    for model_name in model_names:
        print("Creating fina data for " + model_name[0])

        final_data = {}
        brush_data = common.load_json("../steps/" + model_name[0] +
                                      "/brush_data.json")
        diff_data = common.load_json("../steps/" + model_name[0] +
                                     "/diff_plot_data.json")
        distance_data = common.load_json("../steps/" + model_name[0] +
                                         "/distance_data.json")

        final_data[0] = {
            "step_number": 0,
            "valid": brush_data['0']["valid"],
            "brush_data": sanitize_brush_data(brush_data['0']),
            "diff_data": null_diff_data(),
            "distance_data": null_distance_data()
        }

        for step_idx in range(1, len(brush_data)):
            print(str(step_idx) + " ", )
            final_data[step_idx] = {}
            final_data[step_idx]["step_number"] = step_idx
            final_data[step_idx]["valid"] = brush_data[str(step_idx)]["valid"]
            final_data[step_idx]["brush_data"] = sanitize_brush_data(
                brush_data[str(step_idx)])
            final_data[step_idx]["diff_data"] = get_diff_data_step(
                diff_data, step_idx - 1)
            final_data[step_idx]["distance_data"] = get_distance_data_step(
                distance_data, str(step_idx))

        common.save_json(final_data,
                         "../final_data/" + model_name[0] + "/final_data.json",
                         compressed=False)