def setHelper(self):
for fld in [
"inclusion_criteria", "exclusion_criteria",
"confounding_criteria"
]:
self.fields[fld].widget.update_query_parameters(
{'related': self.instance.study.assessment_id})
for fld in self.fields.keys():
widget = self.fields[fld].widget
if type(widget) != forms.CheckboxInput:
if fld in [
'inclusion_criteria', 'exclusion_criteria',
'confounding_criteria'
]:
widget.attrs['class'] = 'span11'
else:
widget.attrs['class'] = 'span12'
if self.instance.id:
inputs = {
"legend_text": u"Update {}".format(self.instance),
"help_text": u"Update an existing study-population.",
"cancel_url": self.instance.get_absolute_url()
}
else:
inputs = {
"legend_text": u"Create new study-population",
"help_text": u"""
Create a new study population. Each study-population is a
associated with an epidemiology study. There may be
multiple study populations with a single study,
though this is typically unlikely.""",
"cancel_url": self.instance.study.get_absolute_url()
}
helper = BaseFormHelper(self, **inputs)
helper.form_class = None
helper.add_fluid_row('name', 2, "span6")
helper.add_fluid_row('country', 3, "span4")
helper.add_fluid_row('sex', 4, "span3")
helper.add_fluid_row('n', 2, "span6")
helper.add_fluid_row('age_mean', 3, "span4")
helper.add_fluid_row('age_description', 3, "span4")
helper.add_fluid_row('age_lower', 4, "span3")
url = '{% url "epi:studycriteria_create" assessment.pk %}'
helper.add_adder("addIncCriteria", "Add new criteria", url)
helper.add_adder("addExcCriteria", "Add new criteria", url)
helper.add_adder("addConCriteria", "Add new criteria", url)
return helper
def setHelper(self):
for fld in ["inclusion_criteria", "exclusion_criteria", "confounding_criteria"]:
self.fields[fld].widget.update_query_parameters({'related': self.instance.study.assessment_id})
for fld in self.fields.keys():
widget = self.fields[fld].widget
if type(widget) != forms.CheckboxInput:
if fld in ['inclusion_criteria', 'exclusion_criteria', 'confounding_criteria']:
widget.attrs['class'] = 'span11'
else:
widget.attrs['class'] = 'span12'
if self.instance.id:
inputs = {
"legend_text": u"Update {}".format(self.instance),
"help_text": u"Update an existing study-population.",
"cancel_url": self.instance.get_absolute_url()
}
else:
inputs = {
"legend_text": u"Create new study-population",
"help_text": u"""
Create a new study population. Each study-population is a
associated with an epidemiology study. There may be
multiple study populations with a single study,
though this is typically unlikely.""",
"cancel_url": self.instance.study.get_absolute_url()
}
helper = BaseFormHelper(self, **inputs)
helper.form_class = None
helper.add_fluid_row('name', 2, "span6")
helper.add_fluid_row('country', 3, "span4")
helper.add_fluid_row('sex', 4, "span3")
helper.add_fluid_row('n', 2, "span6")
helper.add_fluid_row('age_mean', 3, "span4")
helper.add_fluid_row('age_description', 3, "span4")
helper.add_fluid_row('age_lower', 4, "span3")
url = '{% url "epi:studycriteria_create" assessment.pk %}'
helper.add_adder("addIncCriteria", "Add new criteria", url)
helper.add_adder("addExcCriteria", "Add new criteria", url)
helper.add_adder("addConCriteria", "Add new criteria", url)
return helper
def setHelper(self):
if self.instance.id:
inputs = {
"legend_text": u"Update {}".format(self.instance),
"help_text": u"Update an existing endpoint.",
"cancel_url": self.instance.get_absolute_url()
}
else:
inputs = {
"legend_text": u"Create new endpoint",
"help_text": u"""
Create a new endpoint. An endpoint may should describe one
measure-of-effect which was measured in the study. It may
or may not contain quantitative data.""",
"cancel_url": self.instance.animal_group.get_absolute_url()
}
helper = BaseFormHelper(self, **inputs)
helper.form_class = None
helper.form_id = "endpoint"
helper.add_adder("addEffectTag",
"Add new effect tag",
'{% url "assessment:effect_tag_create" assessment.pk %}')
self.fields['diagnostic'].widget.attrs['rows'] = 2
for fld in ('results_notes', 'endpoint_notes', 'power_notes'):
self.fields[fld].widget.attrs['rows'] = 3
# by default take-up the whole row-fluid
for fld in self.fields.keys():
widget = self.fields[fld].widget
if type(widget) != forms.CheckboxInput:
widget.attrs['class'] = 'span12'
helper.add_fluid_row('system', 3, "span4")
helper.add_fluid_row('effects', 2, "span6")
helper.add_fluid_row('data_type', 3, "span4")
helper.add_fluid_row('observation_time', 2, "span6")
helper.add_fluid_row('data_reported', 4, "span4")
helper.add_fluid_row('response_units', 2, "span6")
helper.add_fluid_row('NOEL', 3, "span4")
helper.add_fluid_row('monotonicity', 3, ["span2", "span5", "span5"])
return helper
def setHelper(self):
if self.instance.id:
inputs = {
"legend_text": u"Update {}".format(self.instance),
"help_text": u"Update an existing endpoint.",
"cancel_url": self.instance.get_absolute_url()
}
else:
inputs = {
"legend_text": u"Create new endpoint",
"help_text": u"""
Create a new endpoint. An endpoint may should describe one
measure-of-effect which was measured in the study. It may
or may not contain quantitative data.""",
"cancel_url": self.instance.animal_group.get_absolute_url()
}
helper = BaseFormHelper(self, **inputs)
helper.form_class = None
helper.form_id = "endpoint"
helper.add_adder(
"addEffectTag", "Add new effect tag",
'{% url "assessment:effect_tag_create" assessment.pk %}')
self.fields['diagnostic'].widget.attrs['rows'] = 2
for fld in ('results_notes', 'endpoint_notes', 'power_notes'):
self.fields[fld].widget.attrs['rows'] = 3
# by default take-up the whole row-fluid
for fld in self.fields.keys():
widget = self.fields[fld].widget
if type(widget) != forms.CheckboxInput:
widget.attrs['class'] = 'span12'
helper.add_fluid_row('system', 4, "span3")
helper.add_fluid_row('effects', 2, "span6")
helper.add_fluid_row('data_type', 3, "span4")
helper.add_fluid_row('observation_time', 2, "span6")
helper.add_fluid_row('data_reported', 4, "span4")
helper.add_fluid_row('response_units', 2, "span6")
helper.add_fluid_row('NOEL', 3, "span4")
helper.add_fluid_row('monotonicity', 3, ["span2", "span5", "span5"])
return helper
def setHelper(self):
for fld in self.fields.keys():
widget = self.fields[fld].widget
if fld in ["species", "strain"]:
widget.attrs['class'] = 'span10'
else:
widget.attrs['class'] = 'span12'
if self.instance.id:
inputs = {
"legend_text": u"Update {}".format(self.instance),
"help_text": u"Update an existing animal-group.",
"cancel_url": self.instance.get_absolute_url()
}
else:
inputs = {
"legend_text": u"Create new animal-group",
"help_text": u"""
Create a new animal-group. Each animal-group is a set of
animals which are comparable for a given experiment. For
example, they may be a group of F1 rats. Animal-groups may
have different exposures or doses, but should be otherwise
comparable.""",
"cancel_url": self.instance.experiment.get_absolute_url()
}
helper = BaseFormHelper(self, **inputs)
helper.form_class = None
helper.form_id = "animal_group"
helper.add_adder(
"addSpecies", "Add new species",
'{% url "assessment:species_create" assessment.pk %}')
helper.add_adder("addStrain", "Add new strain",
'{% url "assessment:strain_create" assessment.pk %}')
helper.add_fluid_row('species', 3, "span4")
helper.add_fluid_row('lifestage_exposed', 3, "span4")
if "generation" in self.fields:
helper.add_fluid_row('siblings', 3, "span4")
return helper
def setHelper(self):
for fld in self.fields.keys():
widget = self.fields[fld].widget
if fld in ["species", "strain"]:
widget.attrs['class'] = 'span10'
else:
widget.attrs['class'] = 'span12'
if self.instance.id:
inputs = {
"legend_text": u"Update {}".format(self.instance),
"help_text": u"Update an existing animal-group.",
"cancel_url": self.instance.get_absolute_url()
}
else:
inputs = {
"legend_text": u"Create new animal-group",
"help_text": u"""
Create a new animal-group. Each animal-group is a set of
animals which are comparable for a given experiment. For
example, they may be a group of F1 rats. Animal-groups may
have different exposures or doses, but should be otherwise
comparable.""",
"cancel_url": self.instance.experiment.get_absolute_url()
}
helper = BaseFormHelper(self, **inputs)
helper.form_class = None
helper.form_id = "animal_group"
helper.add_adder("addSpecies", "Add new species", '{% url "animal:species_create" assessment.pk %}')
helper.add_adder("addStrain", "Add new strain", '{% url "animal:strain_create" assessment.pk %}')
helper.add_fluid_row('species', 3, "span4")
helper.add_fluid_row('lifestage_exposed', 3, "span4")
if "generation" in self.fields:
helper.add_fluid_row('siblings', 3, "span4")
return helper
def setHelper(self):
for fld in ('diagnostic_description', 'summary',
'prevalence_incidence', 'statistical_power_details',
'dose_response_details', 'statistical_metric_description'):
self.fields[fld].widget.attrs['rows'] = 3
for fld in self.fields.keys():
widget = self.fields[fld].widget
if type(widget) != forms.CheckboxInput:
if fld in [
"adjustment_factors", "confounders_considered",
"effects"
]:
widget.attrs['class'] = 'span11'
else:
widget.attrs['class'] = 'span12'
if self.instance.id:
inputs = {
"legend_text": u"Update {}".format(self.instance),
"help_text": self.HELP_TEXT_UPDATE,
"cancel_url": self.instance.get_absolute_url()
}
else:
inputs = {
"legend_text": u"Create new exposure",
"help_text": self.HELP_TEXT_CREATE,
"cancel_url": self.instance.exposure.get_absolute_url()
}
helper = BaseFormHelper(self, **inputs)
helper.form_class = None
helper.add_fluid_row('effects', 2, "span6")
helper.add_fluid_row('diagnostic', 2, "span6")
helper.add_fluid_row('summary', 2, "span6")
helper.add_fluid_row('adjustment_factors', 2, "span6")
helper.add_fluid_row('dose_response', 2, "span6")
helper.add_fluid_row('statistical_power', 2, "span6")
helper.add_fluid_row('main_finding', 2, "span6")
helper.add_fluid_row('statistical_metric', 2, "span6")
url = "{% url 'assessment:effect_tag_create' assessment.pk %}"
helper.add_adder("addEffectTags", "Add new effect tag", url)
url = "{% url 'epi:factor_create' assessment.pk %}"
helper.add_adder("addAdj", "Add new adjustment factor", url)
helper.add_adder("addAdjCons", "Add new adjustment factor", url)
return helper
def setHelper(self):
for fld in ('diagnostic_description', 'summary', 'prevalence_incidence',
'statistical_power_details', 'dose_response_details',
'statistical_metric_description'):
self.fields[fld].widget.attrs['rows'] = 3
for fld in self.fields.keys():
widget = self.fields[fld].widget
if type(widget) != forms.CheckboxInput:
if fld in ["adjustment_factors", "confounders_considered", "effects"]:
widget.attrs['class'] = 'span11'
else:
widget.attrs['class'] = 'span12'
if self.instance.id:
inputs = {
"legend_text": u"Update {}".format(self.instance),
"help_text": self.HELP_TEXT_UPDATE,
"cancel_url": self.instance.get_absolute_url()
}
else:
inputs = {
"legend_text": u"Create new exposure",
"help_text": self.HELP_TEXT_CREATE,
"cancel_url": self.instance.exposure.get_absolute_url()
}
helper = BaseFormHelper(self, **inputs)
helper.form_class = None
helper.add_fluid_row('effects', 2, "span6")
helper.add_fluid_row('diagnostic', 2, "span6")
helper.add_fluid_row('summary', 2, "span6")
helper.add_fluid_row('adjustment_factors', 2, "span6")
helper.add_fluid_row('dose_response', 2, "span6")
helper.add_fluid_row('statistical_power', 2, "span6")
helper.add_fluid_row('main_finding', 2, "span6")
helper.add_fluid_row('statistical_metric', 2, "span6")
url = "{% url 'assessment:effect_tag_create' assessment.pk %}"
helper.add_adder("addEffectTags", "Add new effect tag", url)
url = "{% url 'epi:factor_create' assessment.pk %}"
helper.add_adder("addAdj", "Add new adjustment factor", url)
helper.add_adder("addAdjCons", "Add new adjustment factor", url)
return helper
