import numpy as np
from pprint import pprint
import config
from builder import buildPlot
from utils.file import loadJson
from utils.manager import PathManager
dataset = 'virushare-20'
version = 32
model = 'ProtoNet'
report_iter = 100
val_episode = 50
pm = PathManager(dataset, version=version, model_name=model)
train_stat_data = loadJson(pm.doc() + 'train_stat.json')
train_config = loadJson(pm.doc() + 'train.json')
config.reloadArbitraryConfig(train_config, reload_config_list=['plot'])
config.plot.Enabled = True
vis = buildPlot(config.plot)
pprint(train_config)
train_metric = np.array(train_stat_data['train']['metrics']).reshape(
(-1, report_iter)) # 此处假设metric_num=1
train_loss = np.array(train_stat_data['train']['loss']).reshape(
(-1, report_iter))
# validate数据的总数与validate_episode有关
val_metric = np.array(train_stat_data['validate']['metrics']).reshape(
print(f"device: {cfg.deviceId()}")
print('*'*50)
################################################
#----------------------定义数据------------------
################################################
expand = False if loss_func=='nll' else True
loss = t.nn.NLLLoss().cuda() \
if loss_func=='nll' else \
t.nn.MSELoss().cuda()
printState('init managers...')
train_path_manager = PathManager(dataset=data_folder,
d_type='train',
model_name=model_name,
version=version)
val_path_manager = PathManager(dataset=data_folder,
d_type='validate',
model_name=model_name,
version=version)
train_dataset = SeqFileDataset(train_path_manager.FileData(),
train_path_manager.FileSeqLen(),
N)
val_dataset = SeqFileDataset(val_path_manager.FileData(),
val_path_manager.FileSeqLen(),
N)
# train_dataset = ImageFileDataset(train_path_manager.FileData(), N, rd_crop_size=224)
# val_dataset = ImageFileDataset(val_path_manager.FileData(), N, rd_crop_size=224)
print("Fine-tuning")
print("FineTuning Epoch:", ft_epoch)
print('Used dataset: %s'%data_folder)
print('Version: %d'%version)
print(f"{k}-shot {n}-way")
print(f"device: {cfg.deviceId()}")
print('*'*50)
################################################
#----------------------定义数据------------------
################################################
printState('init managers...')
test_path_manager = PathManager(dataset=data_folder,
d_type=USED_SUB_DATASET,
version=version)
################################################
#----------------------读取模型参数------------------
################################################
model_cfg = TrainingConfigManager('./runConfig.json')
modelParams = model_cfg.modelParams()
LRDecayIters, LRDecayGamma, optimizer_type, \
weight_decay, loss_func_name, default_lr, lrs, \
taskBatchSize, criteria = model_cfg.trainingParams()
test_dataset = SeqFileDataset(test_path_manager.FileData(),
# splitDatas(src=man.DatasetBase()+'train/',
# dest=man.DatasetBase()+'validate/',
# ratio=30,
# mode='x',
# is_dir=True)
# splitDatas(src=man.DatasetBase()+'train/',
# dest=man.DatasetBase()+'test/',
# ratio=30,
# mode='x',
# is_dir=True)
################################################################
# 制作基于下标的数据集
################################################################
for d_type in ['train', 'validate', 'test']:
manager = PathManager(dataset='virushare-20-3gram-tfidf', d_type=d_type)
makeDataFile(json_path=manager.Folder(),
w2idx_path=manager.WordIndexMap(),
seq_length_save_path=manager.FileSeqLen(),
data_save_path=manager.FileData(),
idx2cls_mapping_save_path=manager.FileIdx2Cls(),
num_per_class=20,
max_seq_len=700)
################################################################
# renameItemFolder('/home/asichurter/datasets/JSONs/LargePE-100-original/')
# 统计序列长度分布
################################################################
# apiStat('/home/asichurter/datasets/JSONs/HKS/all/',
for ck, cv in re.items():
for kk, kv in cv.items():
if kv > best_acc:
best_acc = kv
best_c = ck
best_k = kk
return best_c, best_k
if __name__ == "__main__":
epoch = 5000
seq_len = 50
n_cluster = 30
n_range = (15, 30)
mng = PathManager("HKS-api")
# # # findOptK(mng.WordEmbedMatrix(), k_range=(2,100))
# apiCluster(mng.WordEmbedMatrix(), mng.DataRoot()+"MarkovClusterMapping.json", cluster_num=n_cluster)
# makeClusteredData(json_path=mng.Folder(),
# cluster_path=mng.DataRoot()+"MarkovClusterMapping.json",
# word_map_path=mng.WordIndexMap(),
# dump_path=mng.DataRozot()+"MarkovClusteredData.npy",
# max_len=seq_len)
# scoreMarkovEpisode(clustered_data_path=mng.DataRoot()+"MarkovClusteredData.npy",
# epoch=2000,
# n_cluster=n_cluster,
# maxlen=seq_len)
# re = gridSearch(c_values=list(range(*n_range)),
# k_values=[i*50 for i in range(1,11)],
# continue
#
# items = random.sample(candidates, num_constrain)
#
# for item in items:
# shutil.copy(src_path+folder+'/'+item,
# dst_path+folder+'/'+item)
#
# reporter.logSuccess()
#
# except Exception as e:
# reporter.logError(entity=folder+'/'+item,
# msg=str(e))
if __name__ == '__main__':
manager = PathManager(dataset='virushare_20', d_type='all')
'''
调用顺序：extract -> mapping -> removeRedundance -> (ngram) -> apiStat
-> stat_classes -> collect
'''
# 根据PE的划分,从json数据集中选出选中的文件收集到文件夹中
#----------------------------------------------------------------
# src_path = '/home/asichurter/datasets/JSONs/jsons - 副本/'
# json_list_path = '/home/asichurter/datasets/PEs/virushare-20-after-increm/all/'
# dst_path = '/home/asichurter/datasets/JSONs/virushare-50-original/'
#
# item_list = []
# for folder in os.listdir(json_list_path):
# item_list += os.listdir(json_list_path+folder+'/')
if padding:
pad_matrix = np.zeros((1, model.wv.vectors.shape[1]))
matrix = np.concatenate((pad_matrix, matrix), axis=0)
for i, w in enumerate(model.wv.index2word):
word2index[
w] = i + 1 if padding else i # 由于idx=0要留给padding，因此所有的下标都加1
word2index['<PAD>'] = 0
if save_matrix_path:
np.save(save_matrix_path, matrix)
if save_word2index_path:
dumpJson(word2index, save_word2index_path)
if save_matrix_path is None and save_word2index_path is None:
return matrix, word2index
printBulletin('Done')
if __name__ == '__main__':
manager = PathManager(dataset='HKS-api', d_type='all')
# print(manager.FileData())
seqs = aggregateApiSequences(manager.Folder())
trainW2Vmodel(seqs,
save_matrix_path=manager.WordEmbedMatrix(),
save_word2index_path=manager.WordIndexMap(),
size=128)
# -*- coding: utf-8
from preliminaries.dataset import makeDataFile
from utils.manager import PathManager
dataset_name = '...'
item_per_family = 20
max_seq_len = 300
for d_type in ['train', 'validate', 'test']:
manager = PathManager(dataset=dataset_name, d_type=d_type)
makeDataFile(json_path=manager.Folder(),
w2idx_path=manager.WordIndexMap(),
seq_length_save_path=manager.FileSeqLen(),
data_save_path=manager.FileData(),
idx2cls_mapping_save_path=manager.FileIdx2Cls(),
num_per_class=item_per_family,
max_seq_len=max_seq_len)
# log_dump_path='/home/omnisky/NewAsichurter/FusionData/reports/Per40_3gram_stat.json') # # mapAndExtractTopKNgram(dir_path='/home/omnisky/NewAsichurter/FusionData/api/LargePE-API-Per40/', # ngram_stat_log_path='/home/omnisky/NewAsichurter/FusionData/reports/Per40_3gram_stat.json', # K=5000, # N=3, # class_dir=True, # map_dump_path='/home/omnisky/NewAsichurter/FusionData/reports/Per40_3gram_map.json') # makeDatasetDirStruct(base_path='/home/omnisky/NewAsichurter/FusionData/datasets/LargePE-Per35/') # # sampleClassWiseData(dst_path='/home/omnisky/NewAsichurter/FusionData/datasets/LargePE-Per35/all/api/', # log_file_path="/home/omnisky/NewAsichurter/FusionData/reports/class_stat_after_processing_log.json", # num_per_class=35) # pm = PathManager(dataset="virushare-20") # trainGloVe(base_path=pm.rootBase(), # dataset='virushare-20', # size=300, # type='all') # renamePEbyMD5fromApi(api_dir_path='/home/omnisky/NewAsichurter/FusionData/datasets/LargePE-Per40/all/api/', # pe_dir_path='/home/omnisky/NewAsichurter/FusionData/datasets/LargePE-Per40/all/pe/') # convertDir2Image(dir_path='F:/FSL_mal_data/datasets/virushare-20/all/pe/', # dst_path='F:/FSL_mal_data/datasets/virushare-20/all/img/') # splitDataset(dataset_path=pm.datasetBase(), # validate_ratio=20, # test_ratio=20)
# }
# for ver, conf in tasks.items():
# machine.addTask('train', flatten_update_config=conf)
# machine.addTask('test', flatten_update_config={
# 'task|version': ver,
# 'load_type': 'best',
# })
# machine.addTask('test', flatten_update_config={
# 'task|version': ver,
# 'load_type': 'last',
# })
s_ver, e_ver = 318, 326
for ver in range(s_ver, e_ver + 1):
pm = PathManager(dataset='virushare-20', version=ver)
if os.path.exists(pm.doc() + 'test_result.json'):
os.remove(pm.doc() + 'test_result.json')
machine.addTask('test',
flatten_update_config={
'task|version': ver,
'load_type': 'best',
})
machine.addTask('test',
flatten_update_config={
'task|version': ver,
'load_type': 'last',
})
# machine.addTask('train',
# {
print('*' * 50)
print('Model Name: %s' % model_type)
print('Used dataset: %s' % data_folder)
print('Version: %d' % version)
print(f"{k}-shot {n}-way")
print(f"device: {cfg.deviceId()}")
print("Is Random Test:", MODEL_RANDOM_STATE)
print('*' * 50)
################################################
#----------------------定义数据------------------
################################################
printState('init managers...')
test_path_manager = PathManager(dataset=data_folder,
d_type=USED_SUB_DATASET,
model_name=model_name,
version=version)
################################################
#----------------------读取模型参数------------------
################################################
param_config_path = 'runConfig.json' if MODEL_RANDOM_STATE else test_path_manager.Doc(
) + 'config.json'
model_cfg = TrainingConfigManager(param_config_path)
modelParams = model_cfg.modelParams()
LRDecayIters, LRDecayGamma, optimizer_type,\
weight_decay, loss_func, default_lr, lrs, \
taskBatchSize, criteria = model_cfg.trainingParams()
for item in items:
shutil.copy(pj(base_dataset_path, tp, folder, item),
pj(new_dataset_path, tp, folder, item))
shutil.copy(base_dataset_path+'data/matrix.npy',
new_dataset_path+'/data/matrix.npy')
shutil.copy(base_dataset_path+'data/wordMap.json',
new_dataset_path+'/data/wordMap.json')
if __name__ == '__main__':
original_dataset_name = 'virushare-20-3gram-tfidf'
new_dataset_name = 'virushare-20-3gram-tfidf-general'
N = 10
seq_len = 200
pm = PathManager(dataset=original_dataset_name)
makeGeneralTestDataset(base_dataset_path=pm.DatasetBase(),
new_dataset_path=pm.ParentBase()+new_dataset_name+'/',
train_num_per_class=N,
include_test=False)
for d_type in ['train', 'validate', 'test']:
manager = PathManager(dataset=new_dataset_name, d_type=d_type)
makeDataFile(json_path=manager.Folder(),
w2idx_path=manager.WordIndexMap(),
seq_length_save_path=manager.FileSeqLen(),
data_save_path=manager.FileData(),
idx2cls_mapping_save_path=manager.FileIdx2Cls(),
num_per_class=N,
max_seq_len=seq_len)