def load_image(fn, colorkey=None):
try:
path = os.path.join(utils.get_library_path(), 'images', fn)
image = pygame.image.load(path)
except pygame.error, message:
print 'Cannot load image:', path
raise SystemExit, message
def evaluate_organism(self, organism):
fd, fn = tempfile.mkstemp()
outfn = "%s.out" % fn
txt = Script % (utils.get_library_path(), organism.genome, outfn)
os.close(fd)
f = open(fn, 'w')
f.write(txt)
f.close()
cmd = "/usr/bin/python %s" % fn
os.system(cmd)
f = open(outfn, 'r')
results = f.read()
results.strip()
results = eval(results)
if results != None:
organism.results = results
organism.value = results['value']
os.unlink(fn)
os.unlink(outfn)
def evaluate_organism(self, organism):
fd, fn = tempfile.mkstemp()
outfn = "%s.out" % fn
txt = Script % (utils.get_library_path(), organism.genome, outfn)
os.close(fd)
f = open(fn, 'w')
f.write(txt)
f.close()
cmd = "/usr/bin/python %s" % fn
os.system(cmd)
f = open(outfn, 'r')
results = f.read()
results.strip()
results = eval(results)
if results != None:
organism.results = results
organism.value = results['value']
os.unlink(fn)
os.unlink(outfn)
import itertools
import os
import numpy as np
import pandas as pd
from scipy.sparse import triu
import pickle
from collections import defaultdict
from tqdm.autonotebook import tqdm
import sys
from data_preparer import S_to_A, S_to_B, incidence_to_hyperedges, prepare_node_hyperneighbors_map
from utils import get_library_path, get_base_path
library_path = get_library_path()
sys.path.append(library_path)
sys.path.append(os.path.join(library_path, "hynetworkx"))
base_path = get_base_path()
def get_avg(_list):
return sum(_list) * 1.0 / len(_list) if len(_list) > 0 else 0
def get_sum(_list):
return sum(_list) * 1.0 if len(_list) > 0 else 0
def get_l11(_list):
return sum(np.abs(_list)) * 1.0 if len(_list) > 0 else 0