def test_validate_pipeline(pipeline):
assert Validate_User_Input.validate_pipeline(pipeline) is True
def tests_validate_ncpus(ncpus):
assert Validate_User_Input.validate_ncpus(ncpus)
def test_validate_ncpus_error():
with pytest.raises(ValueError):
Validate_User_Input.validate_ncpus("badInput")
def validate_sessions(sessions):
assert Validate_User_Input.validate_sessions(sessions)
def test_validate_sessions_error():
with pytest.raises(OSError):
Validate_User_Input.validate_sessions("badInput")
def test_validate_tasks(tasks):
assert Validate_User_Input.validate_tasks(tasks)
def test_validate_wave_error():
with pytest.raises(OSError):
Validate_User_Input.validate_wave("badInput")
def test_validate_wave(wave):
assert Validate_User_Input.validate_wave(wave)
def test_validate_subjects(subjects):
assert Validate_User_Input.validate_subjects(subjects)
globals.pipeline = pipeline
globals.ncpus = ncpus
globals.aux_analysis = aux_analysis
globals.overwrite = overwrite
#Download Subjects from openneuro
if download:
for subject in subjects:
Download_Dataset.download_subject(subject, origin)
setup.setup_environment()
Validate_User_Input.validate_user_input(origin=origin,
destination=destination,
events=events,
wave=wave,
subjects=subjects,
sessions=sessions,
tasks=tasks,
pipeline=pipeline,
ncpus=ncpus,
aux_analysis=aux_analysis)
pool = mp.Pool(int(ncpus))
for subject in subjects:
# Create the output Folder
if not os.path.exists(
os.path.join(destination, subject)
): # If there is no subject folder in the destination create it
os.mkdir(os.path.join(destination, subject))
for session in sessions:
for task in tasks: