def viewer_element(request): from views_util import loadProtocolProject from views_protocol import updateProtocolParams project, protocolViewer = loadProtocolProject(request) protId = request.POST.get('protRunIdViewer', None) viewerParam = request.POST.get('viewerParam', None) protocol = project.getProtocol(int(protId)) protocolViewer.setProtocol(protocol) updateProtocolParams(request, protocolViewer, project) views = protocolViewer._getVisualizeDict()[viewerParam](viewerParam) if views is None: print "no viewer found" else: urls = [] for v in views: # COMMAND VIEW if isinstance(v, CommandView): # v.show() print "CommandView IS ONLY AVAILABLE ON DESKTOP!" else: urls.append(viewToUrl(request, v)) jsonStr = json.dumps(urls, ensure_ascii=False) return HttpResponse(jsonStr, content_type='application/javascript')
def viewer_element(request): from views_util import loadProtocolProject from views_protocol import updateProtocolParams project, protocolViewer = loadProtocolProject(request) protId = request.POST.get('protRunIdViewer', None) viewerParam = request.POST.get('viewerParam', None) protocol = project.getProtocol(int(protId)) protocolViewer.setProtocol(protocol) updateProtocolParams(request, protocolViewer, project) views = protocolViewer._getVisualizeDict()[viewerParam](viewerParam) if views is None: print "no viewer found" else: urls = [] for v in views: # COMMAND VIEW if isinstance(v, CommandView): # v.show() print "CommandView IS ONLY AVAILABLE ON DESKTOP!" else: urls.append(viewToUrl(request, v)) jsonStr = json.dumps(urls, ensure_ascii=False) return HttpResponse(jsonStr, mimetype='application/javascript')
def save_protocol(request): project, protocol = loadProtocolProject(request) updateProtocolParams(request, protocol, project) try: project.saveProtocol(protocol) protId = protocol.getObjId() res = {'success' : protId} except Exception, ex: errors = [parseText(str(ex))] res = {'errors' : errors}
def save_protocol(request): project, protocol = loadProtocolProject(request) updateProtocolParams(request, protocol, project) try: project.saveProtocol(protocol) protId = protocol.getObjId() res = {"success": protId} except Exception, ex: errors = [parseText(str(ex))] res = {"errors": errors}
def protocol(request): project, protocol = loadProtocolProject(request) updateProtocolParams(request, protocol, project) errors = protocol.validate() if len(errors) == 0: # No errors, launch the protocol try: project.launchProtocol(protocol) except Exception, ex: errors = [parseText(str(ex))]
def wizard(request): from views_util import loadProtocolProject from views_protocol import updateProtocolParams # Get the post-dictionary requestDict = getattr(request, "POST") # Get and instance the wizard class className = requestDict.get("wizClassName") wizClass = globals().get(className, None)() # Get the protocol object project, protocol = loadProtocolProject(request) updateProtocolParams(request, protocol, project) print "======================= in wizard: " + str(wizClass) # Obtain the parameters for the wizard return wizClass._run(protocol, request)
def contextForm(request): from views_base import base_form from django.core.context_processors import csrf from views_util import getResourceCss, getResourceIcon, getResourceJs, getResourceLogo from pyworkflow.protocol.params import Group, Line project, protocol = loadProtocolProject(request, requestType='GET') action = request.GET.get('action', None) paramProt = request.GET.get('paramProt', None) protRunIdViewer = request.GET.get('protRunIdViewer', None) # Patch : to fix the relion dynamic way to generate the viewer form # For this is necessary to call setProtocol method if protRunIdViewer is not None: protocol_parent = project.getProtocol(int(protRunIdViewer)) protocol.setProtocol(protocol_parent) hosts = project.getHostNames() print "Host in the project: ", hosts visualize = 0 viewerDict = None if action == 'visualize': visualize = 1 viewerDict = protocol._getVisualizeDict() elif action == 'protSimple': visualize = 2 elif action == 'copy': protocol = project.copyProtocol(protocol) package = protocol.getClassPackage() logoPath = '' path = getattr(package, '_logo', '') if path != '': logoPath = getResourceLogo(path) wizards = findWizardsWeb(protocol) protocol.htmlCitations = parseText(protocol.citations()) protocol.htmlDoc = parseText(protocol.getDoc()) for section in protocol._definition.iterSections(): for paramName, param in section.iterParams(): protVar = getattr(protocol, paramName, None) if protVar is None: # raise Exception("_fillSection: param '%s' not found in protocol" % paramName) # GROUP PARAM if isinstance(param, Group): for paramGroupName, paramGroup in param.iterParams(): protVar = getattr(protocol, paramGroupName, None) # LINE PARAM if isinstance(paramGroup, Line): for paramLineName, paramLine in paramGroup.iterParams(): protVar = getattr(protocol, paramLineName, None) if protVar is None: pass else: paramLine = PreprocessParamForm(request, paramLine, paramLineName, wizards, viewerDict, visualize, protVar) # PATCH: This is applied to all the params in the line, maybe just need for the first one. for name, _ in paramGroup.iterParams(): wizParamName = name if wizParamName in wizards: paramGroup.hasWizard = True paramGroup.wizardClassName = wizards[wizParamName].__name__ if visualize == 1: if paramGroupName in viewerDict: paramGroup.hasViewer = True if not paramGroup.help.empty(): paramGroup.htmlHelp = parseText(paramGroup.help.get()) paramGroup.htmlCond = paramGroup.condition.get() paramGroup.htmlDepend = ','.join(paramGroup._dependants) paramGroup.htmlCondParams = ','.join(paramGroup._conditionParams) elif protVar is None: pass else: paramGroup = PreprocessParamForm(request, paramGroup, paramGroupName, wizards, viewerDict, visualize, protVar) param.htmlCond = param.condition.get() param.htmlDepend = ','.join(param._dependants) param.htmlCondParams = ','.join(param._conditionParams) # LINE PARAM if isinstance(param, Line): for paramLineName, paramLine in param.iterParams(): protVar = getattr(protocol, paramLineName, None) if protVar is None: pass else: paramLine = PreprocessParamForm(request, paramLine, paramLineName, wizards, viewerDict, visualize, protVar) # PATCH: This is applied to all the params in the line, maybe just need for the first one. for name, _ in param.iterParams(): wizParamName = name if wizParamName in wizards: param.hasWizard = True param.wizardClassName = wizards[wizParamName].__name__ if visualize == 1: if paramName in viewerDict: param.hasViewer = True if not param.help.empty(): param.htmlHelp = parseText(param.help.get()) param.htmlCond = param.condition.get() param.htmlDepend = ','.join(param._dependants) param.htmlCondParams = ','.join(param._conditionParams) else: # OTHER PARAM param = PreprocessParamForm(request, param, paramName, wizards, viewerDict, visualize, protVar) context = {SERVICE_NAME: getVarFromRequest(request, SERVICE_NAME), CTX_PROJECT_NAME: project.getShortName(), 'protocol': protocol, 'package_logo': logoPath, 'protRunIdViewer': protRunIdViewer, 'definition': protocol._definition, 'visualize': visualize, 'paramProt': paramProt, 'favicon': getResourceIcon('favicon'), 'comment': getResourceIcon('edit_toolbar'), 'jquery_ui_css': getResourceCss('jquery_ui'), 'wizard': getResourceIcon('wizard'), 'protocol_form_utils': getResourceJs('protocol_form_utils'), 'hosts': hosts, 'comment': parseText(protocol.getObjComment()), 'showHost': True, 'showParallel': True } # Update the context dictionary with the special params for paramName in SPECIAL_PARAMS: context[paramName] = protocol.getAttributeValue(paramName, '') # Cross Site Request Forgery protection is need it context.update(csrf(request)) context = base_form(request, context) return context
def contextForm(request): from views_base import base_form from django.core.context_processors import csrf from views_util import getResourceCss, getResourceIcon, getResourceJs, getResourceLogo from pyworkflow.protocol.params import Group, Line project, protocol = loadProtocolProject(request, requestType="GET") action = request.GET.get("action", None) paramProt = request.GET.get("paramProt", None) protRunIdViewer = request.GET.get("protRunIdViewer", None) # Patch : to fix the relion dynamic way to generate the viewer form # For this is necessary to call setProtocol method if protRunIdViewer is not None: protocol_parent = project.getProtocol(int(protRunIdViewer)) protocol.setProtocol(protocol_parent) hosts = project.getHostNames() print "Host in the project: ", hosts visualize = 0 viewerDict = None if action == "visualize": visualize = 1 viewerDict = protocol._getVisualizeDict() elif action == "protSimple": visualize = 2 elif action == "copy": protocol = project.copyProtocol(protocol) package = protocol.getClassPackage() logoPath = "" path = getattr(package, "_logo", "") if path != "": logoPath = getResourceLogo(path) wizards = findWizardsWeb(protocol) protocol.htmlCitations = parseText(protocol.citations()) protocol.htmlDoc = parseText(protocol.getDoc()) for section in protocol._definition.iterSections(): for paramName, param in section.iterParams(): protVar = getattr(protocol, paramName, None) if protVar is None: # raise Exception("_fillSection: param '%s' not found in protocol" % paramName) # GROUP PARAM if isinstance(param, Group): for paramGroupName, paramGroup in param.iterParams(): protVar = getattr(protocol, paramGroupName, None) # LINE PARAM if isinstance(paramGroup, Line): for paramLineName, paramLine in paramGroup.iterParams(): protVar = getattr(protocol, paramLineName, None) if protVar is None: pass else: paramLine = PreprocessParamForm( request, paramLine, paramLineName, wizards, viewerDict, visualize, protVar ) # PATCH: This is applied to all the params in the line, maybe just need for the first one. for name, _ in paramGroup.iterParams(): wizParamName = name if wizParamName in wizards: paramGroup.hasWizard = True paramGroup.wizardClassName = wizards[wizParamName].__name__ if visualize == 1: if paramGroupName in viewerDict: paramGroup.hasViewer = True if not paramGroup.help.empty(): paramGroup.htmlHelp = parseText(paramGroup.help.get()) paramGroup.htmlCond = paramGroup.condition.get() paramGroup.htmlDepend = ",".join(paramGroup._dependants) paramGroup.htmlCondParams = ",".join(paramGroup._conditionParams) elif protVar is None: pass else: paramGroup = PreprocessParamForm( request, paramGroup, paramGroupName, wizards, viewerDict, visualize, protVar ) param.htmlCond = param.condition.get() param.htmlDepend = ",".join(param._dependants) param.htmlCondParams = ",".join(param._conditionParams) # LINE PARAM if isinstance(param, Line): for paramLineName, paramLine in param.iterParams(): protVar = getattr(protocol, paramLineName, None) if protVar is None: pass else: paramLine = PreprocessParamForm( request, paramLine, paramLineName, wizards, viewerDict, visualize, protVar ) # PATCH: This is applied to all the params in the line, maybe just need for the first one. for name, _ in param.iterParams(): wizParamName = name if wizParamName in wizards: param.hasWizard = True param.wizardClassName = wizards[wizParamName].__name__ if visualize == 1: if paramName in viewerDict: param.hasViewer = True if not param.help.empty(): param.htmlHelp = parseText(param.help.get()) param.htmlCond = param.condition.get() param.htmlDepend = ",".join(param._dependants) param.htmlCondParams = ",".join(param._conditionParams) else: # OTHER PARAM param = PreprocessParamForm(request, param, paramName, wizards, viewerDict, visualize, protVar) context = { "projectName": project.getName(), "package_logo": logoPath, "protocol": protocol, "protRunIdViewer": protRunIdViewer, "definition": protocol._definition, "visualize": visualize, "paramProt": paramProt, "favicon": getResourceIcon("favicon"), "comment": getResourceIcon("edit_toolbar"), "jquery_ui_css": getResourceCss("jquery_ui"), "wizard": getResourceIcon("wizard"), "protocol_form_utils": getResourceJs("protocol_form_utils"), "hosts": hosts, "comment": parseText(protocol.getObjComment()), "showHost": True, "showParallel": True, } # Update the context dictionary with the special params for paramName in SPECIAL_PARAMS: context[paramName] = protocol.getAttributeValue(paramName, "") # Cross Site Request Forgery protection is need it context.update(csrf(request)) context = base_form(request, context) return context