async def test_run_discovery():
wf = discovery.discover_workflow(FIXTURE_TEST_FILE)
discovery.load_fixtures_from__fixtures__(FIXTURE_TEST_FILE)
result = await execution.execute(wf)
assert result["fixture_a"] == "a"
assert result["fixture_b"] == "ab"
assert result["fixture_c"] == "c"
assert result["data_path"]
assert result["temp_path"]
assert result["thread_pool_executor"]
assert result["run_in_executor"]
async def test_updates_sent_to_mongo():
workflow = discover_workflow(EXAMPLE_WORKFLOW_PATH)
db = VirtoolDatabase()
await db._db.jobs.insert_one({"_id": "1"})
await runtime.execute("1", workflow)
document = await db._db.jobs.find_one({"_id": "1"})
updates = [status["update"] for status in document["status"]]
for update in ("Started up", "Step", "Cleaned up"):
assert update in updates
async def test_updates_sent_to_mongo():
with WorkflowFixtureScope() as fixtures:
name = await fixtures.instantiate(db_name)
conn = await fixtures.instantiate(db_connection_string)
db = VirtoolDatabase(name, conn)
await db._db.jobs.insert_one({"_id": "1"})
workflow = discover_workflow(EXAMPLE_WORKFLOW_PATH)
await runtime.execute("1", workflow)
document = await db._db.jobs.find_one({"_id": "1"})
updates = [status["update"] for status in document["status"]]
for update in ("Started up", "Step", "Cleaned up"):
assert update in updates
def test_discover_workflow():
workflow = discovery.discover_workflow(TEST_FILE)
assert isinstance(workflow, Workflow)