def translateVistrail(_vistrail):
""" Translate old annotation based vistrail variables to new
DBVistrailVariable class """
global id_scope
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow,
trans_dict, DBWorkflow())
def update_vistrail_variable(old_obj, trans_dict):
return DBVistrailVariable.update_version(old_obj.db_vistrailVariables,
trans_dict, DBVistrailVariable())
def update_operations(old_obj, trans_dict):
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'add':
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
elif obj.vtType == 'change':
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
return new_ops
def update_annotations(old_obj, trans_dict):
new_annotations = []
for a in old_obj.db_annotations:
new_a = DBAnnotation.update_version(a, trans_dict)
new_annotations.append(new_a)
return new_annotations
def update_actionAnnotations(old_obj, trans_dict):
new_actionAnnotations = []
for aa in old_obj.db_actionAnnotations:
new_aa = DBActionAnnotation.update_version(aa, trans_dict)
new_actionAnnotations.append(new_aa)
return new_actionAnnotations
translate_dict = {'DBWorkflow': {'operations': update_workflow},
'DBAction': {'operations': update_operations},
'DBGroup': {'workflow': update_workflow},
'DBVistrail': {'annotations': update_annotations,
'actionAnnotations': \
update_actionAnnotations,
'DBVistrailVariable': \
update_vistrail_variable
}
}
vistrail = DBVistrail()
id_scope = vistrail.idScope
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
vistrail.db_version = '1.0.4'
return vistrail
def translateVistrail(_vistrail):
""" Translate old annotation based vistrail variables to new
DBVistrailVariable class """
global id_scope
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow, trans_dict,
DBWorkflow())
translate_dict = {'DBGroup': {'workflow': update_workflow}}
vistrail = DBVistrail()
id_scope = vistrail.idScope
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
vistrail.db_version = '1.0.4'
return vistrail
def translateVistrail(_vistrail):
""" Translate old annotation based vistrail variables to new
DBVistrailVariable class """
global id_scope
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow,
trans_dict, DBWorkflow())
translate_dict = {'DBGroup': {'workflow': update_workflow}}
vistrail = DBVistrail()
id_scope = vistrail.idScope
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
vistrail.db_version = '1.0.4'
return vistrail
def translateVistrail(_vistrail):
""" Translate new DBVistrailVariable based vistrail variables to old
annotation based type """
global id_scope
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow, trans_dict,
DBWorkflow())
def update_operations(old_obj, trans_dict):
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'add':
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
elif obj.vtType == 'change':
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
return new_ops
vistrail = DBVistrail()
id_scope = vistrail.idScope
translate_dict = {
'DBAction': {
'operations': update_operations
},
'DBGroup': {
'workflow': update_workflow
}
}
if _vistrail.db_controlParameters:
debug.warning(
("Vistrail contains %s control parameters that "
"cannot be converted") % len(_vistrail.db_controlParameters))
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
vistrail.db_version = '1.0.4'
return vistrail
def translateVistrail(_vistrail):
""" Translate new DBVistrailVariable based vistrail variables to old
annotation based type """
global id_scope
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow,
trans_dict, DBWorkflow())
def update_operations(old_obj, trans_dict):
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'add':
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
elif obj.vtType == 'change':
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
return new_ops
vistrail = DBVistrail()
id_scope = vistrail.idScope
translate_dict = {'DBAction': {'operations': update_operations},
'DBGroup': {'workflow': update_workflow}
}
if _vistrail.db_controlParameters:
debug.warning(("Vistrail contains %s control parameters that "
"cannot be converted") % len(_vistrail.db_controlParameters))
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
vistrail.db_version = '1.0.4'
return vistrail
