def create_cell_picker(self):
"""creates the vtk picker objects"""
self.cell_picker = vtk.vtkCellPicker()
self.node_picker = vtk.vtkPointPicker()
self.area_picker = vtk.vtkAreaPicker() # vtkRenderedAreaPicker?
self.rubber_band_style = vtk.vtkInteractorStyleRubberBandPick()
#vtk.vtkInteractorStyleRubberBand2D
#vtk.vtkInteractorStyleRubberBand3D
#vtk.vtkInteractorStyleRubberBandZoom
#vtk.vtkInteractorStyleAreaSelectHover
#vtk.vtkInteractorStyleDrawPolygon
#vtk.vtkAngleWidget
#vtk.vtkAngleRepresentation2D
#vtk.vtkAngleRepresentation3D
#vtk.vtkAnnotation
#vtk.vtkArrowSource
#vtk.vtkGlyph2D
#vtk.vtkGlyph3D
#vtk.vtkHedgeHog
#vtk.vtkLegendBoxActor
#vtk.vtkLegendScaleActor
#vtk.vtkLabelPlacer
self.cell_picker.SetTolerance(0.001)
self.node_picker.SetTolerance(0.001)
def start_pick(self):
#Required to change interactor
style = vtk.vtkInteractorStyleRubberBandPick()
self.iren.SetInteractorStyle(style)
picker = vtk.vtkAreaPicker()
self.iren.SetPicker(picker)
picker.AddObserver("EndPickEvent", self.picker_callback)
def __init__(self, volume):
super(VtkWindow, self).__init__()
self._default_size = 800
self.resize(self._default_size, self._default_size)
self._volume = numpy.ascontiguousarray(volume, dtype="float32")
self._central_widget = QtWidgets.QWidget(self)
self._vtk_widget = QVTKRenderWindowInteractor(self._central_widget)
self._vtk_widget.SetInteractorStyle(
vtk.vtkInteractorStyleRubberBandPick())
self._float_array = vtk.vtkFloatArray()
self._float_array.SetNumberOfComponents(1)
self._float_array.SetVoidArray(self._volume,
numpy.product(self._volume.shape),
1)
self._image_data = vtk.vtkImageData()
self._image_data.SetDimensions(*self._volume.shape)
self._image_data.GetPointData().SetScalars(self._float_array)
self._renderer = vtk.vtkRenderer()
self._renderer.SetBackground(0., 0., 0.)
self._layout = QtWidgets.QVBoxLayout()
self._layout.addWidget(self._vtk_widget)
self._central_widget.setLayout(self._layout)
self.setCentralWidget(self._central_widget)
def __init__(self, volume, spacing=(1., 1., 1.)):
super(InteractiveIsosurface, self).__init__()
self._default_size = (600, 600)
self.resize(*self._default_size)
self._surface_object = IsoSurface(volume, spacing=spacing)
self._central_widget = QtWidgets.QWidget(self)
self._vtk_widget = QVTKRenderWindowInteractor(self._central_widget)
self._vtk_widget.SetInteractorStyle(
_vtk.vtkInteractorStyleRubberBandPick())
self._renderer = _vtk.vtkRenderer()
self._renderer.SetBackground(0., 0., 0.)
self._surface_object.set_renderer(self._renderer)
self._THRESHOLD_SLIDER_MAXIMUM = 1000
self._THRESHOLD_SLIDER_INIT = self._THRESHOLD_SLIDER_MAXIMUM/2
self._threshold_table = self._adaptive_slider_values(
volume, self._THRESHOLD_SLIDER_MAXIMUM, volume.min(), volume.max())
self._threshold_slider = QtWidgets.QSlider(QtCore.Qt.Horizontal)
self._threshold_slider.setMaximum(self._THRESHOLD_SLIDER_MAXIMUM)
self._layout = QtWidgets.QVBoxLayout()
self._layout.addWidget(self._vtk_widget)
self._layout.addWidget(self._threshold_slider)
self._central_widget.setLayout(self._layout)
self.setCentralWidget(self._central_widget)
def __init__(self, prnt, controller=None):
from vtk.wx.wxVTKRenderWindowInteractor import wxVTKRenderWindowInteractor
from vtk import vtkRenderWindow, vtkRenderer
import wx
import sys
self.prnt = prnt
self.fullscreen_on = 0
self.controller = controller
iren = wxVTKRenderWindowInteractor(prnt, -1, size=prnt.GetSize())
iren.SetPosition((0, 0))
renwin = iren.GetRenderWindow()
renwin.StereoCapableWindowOn()
renwin.StereoRenderOff()
if (sys.platform == 'linux2'):
iren.AddObserver("CharEvent", self.key_down)
iren.Show(1)
iren.Render()
elif (sys.platform == 'win32'):
from vtk import vtkInteractorStyleRubberBandPick
style = vtkInteractorStyleRubberBandPick()
iren.SetInteractorStyle(style)
iren.SetDesiredUpdateRate(1)
iren.Enable(1)
else:
print "Check OS behaviour to determine how renderer and fullscreen will work on data_viewer"
self.iren = iren
def __init__(self, volume):
super(VtkWindow, self).__init__()
self._default_size = 600
self.resize(self._default_size, self._default_size)
self._volume = numpy.ascontiguousarray(volume, dtype="float32")
self._central_widget = QtGui.QWidget(self)
self._vtk_widget = QVTKRenderWindowInteractor(self._central_widget)
self._vtk_widget.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick())
self._float_array = vtk.vtkFloatArray()
self._float_array.SetNumberOfComponents(1)
self._float_array.SetVoidArray(self._volume, numpy.product(self._volume.shape), 1)
self._image_data = vtk.vtkImageData()
self._image_data.SetDimensions(*self._volume.shape)
self._image_data.GetPointData().SetScalars(self._float_array)
self._renderer = vtk.vtkRenderer()
self._renderer.SetBackground(0., 0., 0.)
self._layout = QtGui.QVBoxLayout()
self._layout.addWidget(self._vtk_widget)
self._central_widget.setLayout(self._layout)
self.setCentralWidget(self._central_widget)
def start_pick(self):
#Required to change interactor
style=vtk.vtkInteractorStyleRubberBandPick()
self.iren.SetInteractorStyle(style)
picker = vtk.vtkAreaPicker()
self.iren.SetPicker(picker)
picker.AddObserver("EndPickEvent", self.picker_callback)
def __init__(self, data, parent):
super(SliceViewer, self).__init__()
self._data = data
self._lut = None
self._actors = {}
self._camera = None
#self._slice_generator = SliceGenerator(self._data.get_image_side(), self._data.get_curvature())
#self._workspace = QtGui.QWorkspace()
self._widget = QtGui.QWidget(parent)
self._vtk_widget = QVTKRenderWindowInteractor(self._widget)
self._vtk_widget.SetInteractorStyle(
vtk.vtkInteractorStyleRubberBandPick())
#self._vtk_widget = QtGui.QPushButton("Foo", parent=self._widget)
layout = QtGui.QVBoxLayout()
#layout.addWidget(self._workspace)
layout.addWidget(self._vtk_widget)
#self._workspace.addWindow(self._vtk_widget)
self._widget.setLayout(layout)
# self._vtk_widget.Initialize()
# self._vtk_widget.Start()
self._renderer = vtk.vtkRenderer()
self._renderer.SetDraw(0)
self._vtk_render_window = self._vtk_widget.GetRenderWindow()
self._vtk_render_window.AddRenderer(self._renderer)
def __init__(self, volume):
super(InteractiveIsosurface, self).__init__()
self._default_size = (600, 600)
self.resize(*self._default_size)
#self._volume = numpy.ascontiguousarray(volume, dtype="float32")
self._surface_object = IsoSurface(volume)
self._central_widget = QtGui.QWidget(self)
self._vtk_widget = QVTKRenderWindowInteractor(self._central_widget)
self._vtk_widget.SetInteractorStyle(_vtk.vtkInteractorStyleRubberBandPick())
self._renderer = _vtk.vtkRenderer()
self._renderer.SetBackground(0., 0., 0.)
self._surface_object.set_renderer(self._renderer)
self._THRESHOLD_SLIDER_MAXIMUM = 1000
self._THRESHOLD_SLIDER_INIT = self._THRESHOLD_SLIDER_MAXIMUM/2
self._threshold_table = self._adaptive_slider_values(volume, self._THRESHOLD_SLIDER_MAXIMUM, volume.min(), volume.max())
self._threshold_slider = QtGui.QSlider(QtCore.Qt.Horizontal)
self._threshold_slider.setMaximum(self._THRESHOLD_SLIDER_MAXIMUM)
self._layout = QtGui.QVBoxLayout()
self._layout.addWidget(self._vtk_widget)
self._layout.addWidget(self._threshold_slider)
self._central_widget.setLayout(self._layout)
self.setCentralWidget(self._central_widget)
def __init__(self, parent=None):
super(ModelmapViewer, self).__init__(parent)
self._surface_algorithm = None
self._surface_actor = None
self._volume_scalars = None
self._volume = None
self._surface_level = 0.5
self._color = (0.2, 0.8, 0.2)
self._planes = []
self._volume_max = 0.
self._volume_numpy = None
self._vtk_widget = QVTKRenderWindowInteractor(self._widget) # _vtk_widget is actually the RenderWindowInteractor
self._vtk_widget.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick())
layout = QtGui.QVBoxLayout()
layout.addWidget(self._vtk_widget)
self._widget.setLayout(layout)
#self._vtk_widget.Initialize()
#self._vtk_widget.Start()
self._renderer = vtk.vtkRenderer()
self._vtk_render_window = self._vtk_widget.GetRenderWindow()
self._vtk_render_window.AddRenderer(self._renderer)
#self._renderer = self._vtk_widget.GetRenderWindow().GetRenderer()
self._lut = vtk_tools.get_lookup_table(0., 1., log=False, colorscale="jet")
self._create_volume_map()
white = (1., 1., 1.)
self._renderer.SetBackground(white)
def start_pick(self):
style = vtk.vtkInteractorStyleRubberBandPick()
self.iren.SetInteractorStyle(style)
picker = vtk.vtkAreaPicker()
self.iren.SetPicker(picker)
picker.AddObserver("EndPickEvent", self.picker_callback)
self.ui.vtkWidget.setFocus()
def plot_planes(array_in, spacing=(1., 1., 1.), log=False, cmap=None):
"""Plot two interactive planes cutting the provided volume."""
array_in = _numpy.float64(array_in)
renderer = _vtk.vtkRenderer()
render_window = _vtk.vtkRenderWindow()
render_window.AddRenderer(renderer)
interactor = _vtk.vtkRenderWindowInteractor()
interactor.SetRenderWindow(render_window)
interactor.SetInteractorStyle(_vtk.vtkInteractorStyleRubberBandPick())
if cmap is None:
import matplotlib as _matplotlib
cmap = _matplotlib.rcParams["image.cmap"]
lut = get_lookup_table(max(0., array_in.min()), array_in.max(), log=log,
colorscale=cmap)
picker = _vtk.vtkCellPicker()
picker.SetTolerance(0.005)
image_data = array_to_image_data(array_in)
image_data.SetSpacing(spacing[2], spacing[1], spacing[0])
def setup_plane():
"""Create and setup a singel plane."""
plane = _vtk.vtkImagePlaneWidget()
if VTK_VERSION >= 6:
plane.SetInputData(image_data)
else:
plane.SetInput(image_data)
plane.UserControlledLookupTableOn()
plane.SetLookupTable(lut)
plane.DisplayTextOn()
plane.SetPicker(picker)
plane.SetLeftButtonAction(1)
plane.SetMiddleButtonAction(2)
plane.SetRightButtonAction(0)
plane.SetInteractor(interactor)
return plane
plane_1 = setup_plane()
plane_1.SetPlaneOrientationToYAxes()
plane_1.SetSliceIndex(int(array_in.shape[0]*spacing[0]/2))
plane_1.SetEnabled(1)
plane_2 = setup_plane()
plane_2.SetPlaneOrientationToZAxes()
plane_2.SetSliceIndex(int(array_in.shape[1]*spacing[1]/2))
plane_2.SetEnabled(1)
renderer.SetBackground(0., 0., 0.)
render_window.SetSize(800, 800)
interactor.Initialize()
render_window.Render()
interactor.Start()
def main(fn):
reader = vtk.vtkXMLUnstructuredGridReader()
reader.SetFileName(fn)
reader.Update()
converter = vtk.vtkUnstructuredGridToExplicitStructuredGrid()
converter.GlobalWarningDisplayOff() # hide VTK errors
converter.SetInputConnection(reader.GetOutputPort())
converter.SetInputArrayToProcess(0, 0, 0, 1, 'BLOCK_I')
converter.SetInputArrayToProcess(1, 0, 0, 1, 'BLOCK_J')
converter.SetInputArrayToProcess(2, 0, 0, 1, 'BLOCK_K')
converter.Update()
grid = converter.GetOutput()
grid.ComputeFacesConnectivityFlagsArray()
grid.GetCellData().SetActiveScalars('ConnectivityFlags')
scalars = grid.GetCellData().GetArray('ConnectivityFlags')
mapper = vtk.vtkDataSetMapper()
mapper.SetInputData(grid)
mapper.SetColorModeToMapScalars()
mapper.SetScalarRange(scalars.GetRange())
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().EdgeVisibilityOn()
colors = vtk.vtkNamedColors()
renderer = vtk.vtkRenderer()
renderer.AddActor(actor)
renderer.SetBackground(colors.GetColor3d('DimGray'))
window = vtk.vtkRenderWindow()
window.AddRenderer(renderer)
window.SetWindowName('LoadESGrid')
window.SetSize(1024, 768)
window.Render()
camera = renderer.GetActiveCamera()
camera.SetPosition(312452.407650, 7474760.406373, 3507.364723)
camera.SetFocalPoint(314388.388434, 7481520.509575, -2287.477388)
camera.SetViewUp(0.089920, 0.633216, 0.768734)
camera.SetDistance(9111.926908)
camera.SetClippingRange(595.217338, 19595.429475)
interactor = vtk.vtkRenderWindowInteractor()
interactor.SetRenderWindow(window)
interactor.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick())
window.Render()
interactor.Start()
def plot_planes(array_in, log=False, cmap=None):
"""Plot two interactive planes cutting the provided volume."""
array_in = _numpy.float64(array_in)
renderer = _vtk.vtkRenderer()
render_window = _vtk.vtkRenderWindow()
render_window.AddRenderer(renderer)
interactor = _vtk.vtkRenderWindowInteractor()
interactor.SetRenderWindow(render_window)
interactor.SetInteractorStyle(_vtk.vtkInteractorStyleRubberBandPick())
if cmap == None:
import matplotlib as _matplotlib
cmap = _matplotlib.rcParams["image.cmap"]
lut = get_lookup_table(max(0., array_in.min()), array_in.max(), log=log, colorscale=cmap)
picker = _vtk.vtkCellPicker()
picker.SetTolerance(0.005)
image_data = array_to_image_data(array_in)
def setup_plane():
"""Create and setup a singel plane."""
plane = _vtk.vtkImagePlaneWidget()
if VTK_VERSION >= 6:
plane.SetInputData(image_data)
else:
plane.SetInput(image_data)
plane.UserControlledLookupTableOn()
plane.SetLookupTable(lut)
plane.DisplayTextOn()
plane.SetPicker(picker)
plane.SetLeftButtonAction(1)
plane.SetMiddleButtonAction(2)
plane.SetRightButtonAction(0)
plane.SetInteractor(interactor)
return plane
plane_1 = setup_plane()
plane_1.SetPlaneOrientationToXAxes()
plane_1.SetSliceIndex(array_in.shape[0]//2)
plane_1.SetEnabled(1)
plane_2 = setup_plane()
plane_2.SetPlaneOrientationToYAxes()
plane_2.SetSliceIndex(array_in.shape[1]//2)
plane_2.SetEnabled(1)
renderer.SetBackground(0., 0., 0.)
render_window.SetSize(800, 800)
interactor.Initialize()
render_window.Render()
interactor.Start()
def setup_window(size=(400, 400), background=(1., 1., 1.)):
renderer = _vtk.vtkRenderer()
#renderer.SetUseDepthPeeling(True)
render_window = _vtk.vtkRenderWindow()
render_window.AddRenderer(renderer)
interactor = _vtk.vtkRenderWindowInteractor()
interactor.SetInteractorStyle(_vtk.vtkInteractorStyleRubberBandPick())
interactor.SetRenderWindow(render_window)
renderer.SetBackground(background[0], background[1], background[2])
render_window.SetSize(size[0], size[1])
interactor.Initialize()
render_window.Render()
return renderer, render_window, interactor
def setup_window(size=(800, 800), background=(1., 1., 1.)):
"""Returns (renderer, render_window, interactor)"""
renderer = _vtk.vtkRenderer()
render_window = _vtk.vtkRenderWindow()
render_window.AddRenderer(renderer)
interactor = _vtk.vtkRenderWindowInteractor()
interactor.SetInteractorStyle(_vtk.vtkInteractorStyleRubberBandPick())
interactor.SetRenderWindow(render_window)
renderer.SetBackground(background[0], background[1], background[2])
render_window.SetSize(size[0], size[1])
interactor.Initialize()
render_window.Render()
return renderer, render_window, interactor
def vertex_select(self):
if self.ui.choose_vertex_button.isChecked():
self.vertex_actor.SetVisibility(True)
self.iren.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick())
picker = vtk.vtkAreaPicker()
self.iren.SetPicker(picker)
picker.AddObserver("EndPickEvent", self.picker_callback)
self.ui.trans_origin_button.setEnabled(False)
self.ui.vtkWidget.setFocus()
self.ui.vtkWidget.update()
else:
self.ui.trans_origin_button.setEnabled(False)
self.vertex_actor.SetVisibility(False)
self.ui.trans_origin_button.setEnabled(True)
self.iren.SetInteractorStyle(vtk.vtkInteractorStyleTrackballCamera())
self.transform_origin()
self.ui.vtkWidget.update()
def plot_isosurface(volume, level=None):
"""Plot isosurfaces of the provided module. Levels can be iterable or singel value."""
surface_object = IsoSurface(volume, level)
renderer = _vtk.vtkRenderer()
render_window = _vtk.vtkRenderWindow()
render_window.AddRenderer(renderer)
interactor = _vtk.vtkRenderWindowInteractor()
interactor.SetRenderWindow(render_window)
interactor.SetInteractorStyle(_vtk.vtkInteractorStyleRubberBandPick())
#renderer.AddActor(surface_object.get_actor())
surface_object.set_renderer(renderer)
renderer.SetBackground(0., 0., 0.)
render_window.SetSize(800, 800)
interactor.Initialize()
render_window.Render()
interactor.Start()
def plot_isosurface(volume, level=None, spacing=(1., 1., 1.)):
"""Plot isosurfaces of the provided module. Levels can be iterable or
singel value."""
surface_object = IsoSurface(volume, level, spacing)
renderer = _vtk.vtkRenderer()
render_window = _vtk.vtkRenderWindow()
render_window.AddRenderer(renderer)
interactor = _vtk.vtkRenderWindowInteractor()
interactor.SetRenderWindow(render_window)
interactor.SetInteractorStyle(_vtk.vtkInteractorStyleRubberBandPick())
surface_object.set_renderer(renderer)
renderer.SetBackground(0., 0., 0.)
render_window.SetSize(800, 800)
interactor.Initialize()
render_window.Render()
interactor.Start()
def __init__(self, parent=None):
super(RotationViewer, self).__init__()
#self._widget = QtGui.QWidget(parent)
self._vtk_widget = QVTKRenderWindowInteractor(self._widget) # _vtk_widget is actually the RenderWindowInteractor
self._vtk_widget.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick())
#self._vtk_widget.Initialize()
layout = QtGui.QVBoxLayout()
layout.addWidget(self._vtk_widget)
self._widget.setLayout(layout)
self._renderer = vtk.vtkRenderer()
self._vtk_widget.GetRenderWindow().AddRenderer(self._renderer)
#self._mlab_widget = embedded_mayavi.MlabWidget()
self._setup_done = False
self._points = None
self._default_sphere_n = 10
self._sphere = vtk_tools.SphereMap(self._default_sphere_n)
self._renderer.AddViewProp(self._sphere.get_actor())
self._renderer.SetBackground(1., 1., 1.)
def __init__(self, parent=None):
super(ModelmapViewer, self).__init__(parent)
self._surface_algorithm = None
self._surface_actor = None
self._volume_scalars = None
self._volume = None
self._surface_level = 0.5
self._color = (0.2, 0.8, 0.2)
self._planes = []
self._volume_max = 0.
self._volume_numpy = None
self._vtk_widget = QVTKRenderWindowInteractor(
self._widget) # _vtk_widget is actually the RenderWindowInteractor
self._vtk_widget.SetInteractorStyle(
vtk.vtkInteractorStyleRubberBandPick())
layout = QtGui.QVBoxLayout()
layout.addWidget(self._vtk_widget)
self._widget.setLayout(layout)
#self._vtk_widget.Initialize()
#self._vtk_widget.Start()
self._renderer = vtk.vtkRenderer()
self._renderer.SetDraw(0)
self._vtk_render_window = self._vtk_widget.GetRenderWindow()
self._vtk_render_window.AddRenderer(self._renderer)
#self._renderer = self._vtk_widget.GetRenderWindow().GetRenderer()
self._lut = vtk_tools.get_lookup_table(0.,
1.,
log=False,
colorscale="jet")
self._create_volume_map()
#self._setup_slices()
#self._setup_surface()
white = (1., 1., 1.)
self._renderer.SetBackground(white)
def main():
grid = create_explicit_structured_grid((5, 6, 7), (20, 10, 1))
grid = convert_to_unstructured_grid(grid)
grid = convert_to_explicit_structured_grid(grid)
mapper = vtk.vtkDataSetMapper()
mapper.SetInputData(grid)
colors = vtk.vtkNamedColors()
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().EdgeVisibilityOn()
actor.GetProperty().LightingOff()
actor.GetProperty().SetColor(colors.GetColor3d('Seashell'))
renderer = vtk.vtkRenderer()
renderer.AddActor(actor)
renderer.SetBackground(colors.GetColor3d('DarkSlateGray'))
window = vtk.vtkRenderWindow()
window.AddRenderer(renderer)
window.SetWindowName('CreateESGrid')
window.SetSize(1024, 768)
window.Render()
camera = renderer.GetActiveCamera()
camera.SetPosition(8.383354, -72.468670, 94.262605)
camera.SetFocalPoint(42.295234, 21.111537, -0.863606)
camera.SetViewUp(0.152863, 0.676710, 0.720206)
camera.SetDistance(137.681759)
camera.SetClippingRange(78.173985, 211.583658)
interactor = vtk.vtkRenderWindowInteractor()
interactor.SetRenderWindow(window)
interactor.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick())
window.Render()
interactor.Start()
def __init__(self, data, parent):
super(SliceViewer, self).__init__()
self._data = data
self._lut = None
self._actors = None
self._camera = None
#self._slice_generator = SliceGenerator(self._data.get_image_side(), self._data.get_curvature())
#self._workspace = QtGui.QWorkspace()
self._widget = QtGui.QWidget(parent)
self._vtk_widget = QVTKRenderWindowInteractor(self._widget)
self._vtk_widget.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick())
#self._vtk_widget = QtGui.QPushButton("Foo", parent=self._widget)
layout = QtGui.QVBoxLayout()
#layout.addWidget(self._workspace)
layout.addWidget(self._vtk_widget)
#self._workspace.addWindow(self._vtk_widget)
self._widget.setLayout(layout)
# self._vtk_widget.Initialize()
# self._vtk_widget.Start()
self._renderer = vtk.vtkRenderer()
self._vtk_render_window = self._vtk_widget.GetRenderWindow()
self._vtk_render_window.AddRenderer(self._renderer)
def test_vtkInteractorStyleRubberBandPick():
ren = vtk.vtkRenderer()
ren.SetBackground(1.0, 1.0, 1.0)
V, T = box_model(5, 10, 1.0, 1.0)
poly_data = numpy_to_vtkPolyData(V, faces.faces_to_cell_array(T))
idFilter = vtk.vtkIdFilter()
idFilter.SetInput(poly_data)
idFilter.SetIdsArrayName('i')
idFilter.Update()
poly_data = idFilter.GetOutput()
mapper = vtk.vtkPolyDataMapper()
mapper.SetInput(poly_data)
mapper.SetScalarVisibility(False)
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().SetColor(0.0, 0.6, 0.3)
ren.AddActor(actor)
visible = vtk.vtkSelectVisiblePoints()
visible.SetInput(poly_data)
visible.SetRenderer(ren)
# highlight
sphere = vtk.vtkSphereSource()
sphere.SetRadius(0.2)
highlight_poly_data = vtk.vtkPolyData()
highlight_glyph = vtk.vtkGlyph3D()
highlight_glyph.SetInput(highlight_poly_data)
highlight_glyph.SetSourceConnection(sphere.GetOutputPort())
highlight_mapper = vtk.vtkPolyDataMapper()
highlight_mapper.SetInputConnection(highlight_glyph.GetOutputPort())
highlight_actor = vtk.vtkActor()
highlight_actor.SetMapper(highlight_mapper)
highlight_actor.GetProperty().SetColor(1.0, 0.0, 0.0)
highlight_actor.VisibilityOff()
highlight_actor.PickableOff()
ren.AddActor(highlight_actor)
# render window
render_window = vtk.vtkRenderWindow()
render_window.AddRenderer(ren)
render_window.SetSize(400, 400)
picker = vtk.vtkAreaPicker()
def pickCallback(obj, event):
props = obj.GetProp3Ds()
if props.GetNumberOfItems() <= 0:
return
extract_geometry = vtk.vtkExtractGeometry()
extract_geometry.SetImplicitFunction(picker.GetFrustum())
extract_geometry.SetInput(props.GetLastProp3D().GetMapper().GetInput())
extract_geometry.Update()
unstructured_grid = extract_geometry.GetOutput()
if unstructured_grid.GetPoints().GetNumberOfPoints() <= 0:
return
visible.Update()
if visible.GetOutput().GetPoints().GetNumberOfPoints() <= 0:
return
i = np.intersect1d(
vtk_to_numpy(unstructured_grid.GetPointData().GetArray('i')),
vtk_to_numpy(visible.GetOutput().GetPointData().GetArray('i')))
if i.shape[0] <= 0:
return
vtk_points = vtk.vtkPoints()
vtk_points.SetNumberOfPoints(i.shape[0])
vtk_points_data = vtk_to_numpy(vtk_points.GetData())
vtk_points_data.flat = np.require(V[i], np.float32, 'C')
highlight_poly_data.SetPoints(vtk_points)
highlight_actor.VisibilityOn()
picker.AddObserver('EndPickEvent', pickCallback)
iren = vtk.vtkRenderWindowInteractor()
iren.SetRenderWindow(render_window)
iren.SetPicker(picker)
ren.ResetCamera()
render_window.Render()
style = vtk.vtkInteractorStyleRubberBandPick()
style.SetCurrentRenderer(ren)
iren.SetInteractorStyle(style)
iren.Initialize()
iren.Start()
def _setup_pipeline(self):
ren = vtk.vtkRenderer()
ren.SetBackground(1.0, 1.0, 1.0)
color_points = vtk.vtkProgrammableFilter()
def callback_color_points():
input_ = color_points.GetInput()
output = color_points.GetOutput()
output.ShallowCopy(input_)
lookup = vtk.vtkFloatArray()
lookup.SetNumberOfValues(input_.GetNumberOfPoints())
npy_lookup = vtk_to_numpy(lookup)
npy_lookup.flat = self._k.astype(
np.float32) / (COLORMAP.shape[0] - 1)
output.GetPointData().SetScalars(lookup)
color_points.SetExecuteMethod(callback_color_points)
source = vtk.vtkCubeSource()
vertices_glyph = vtk.vtkGlyph3D()
vertices_glyph.SetInputConnection(color_points.GetOutputPort())
vertices_glyph.SetSourceConnection(source.GetOutputPort())
vertices_glyph.SetScaleModeToDataScalingOff()
vertices_glyph.SetColorModeToColorByScalar()
vertices_mapper = vtk.vtkPolyDataMapper()
vertices_mapper.SetInputConnection(vertices_glyph.GetOutputPort())
vertices_mapper.SetLookupTable(LUT)
vertices_actor = vtk.vtkActor()
vertices_actor.SetMapper(vertices_mapper)
vertices_actor.GetProperty().SetColor(*COLORMAP[0, :3])
vertices_actor.PickableOff()
vertices_actor.VisibilityOff()
ren.AddActor(vertices_actor)
color_faces = vtk.vtkProgrammableFilter()
def callback_color_faces():
input_ = color_faces.GetInput()
output = color_faces.GetOutput()
output.ShallowCopy(input_)
lookup = vtk.vtkFloatArray()
lookup.SetNumberOfValues(input_.GetNumberOfPolys())
npy_lookup = vtk_to_numpy(lookup)
labelled_T = self._k[self.T]
for i in xrange(input_.GetNumberOfPolys()):
l = np.argmax(np.bincount(labelled_T[i]))
npy_lookup[i] = float(l) / (COLORMAP.shape[0] - 1)
output.GetCellData().SetScalars(lookup)
color_faces.SetExecuteMethod(callback_color_faces)
model_mapper = vtk.vtkPolyDataMapper()
model_mapper.SetInputConnection(color_faces.GetOutputPort())
model_mapper.SetLookupTable(LUT)
model_actor = vtk.vtkActor()
model_actor.SetMapper(model_mapper)
model_actor.GetProperty().SetColor(*COLORMAP[0, :3])
model_actor.VisibilityOff()
ren.AddActor(model_actor)
render_window = vtk.vtkRenderWindow()
render_window.AddRenderer(ren)
render_window.SetSize(400, 400)
self.SetRenderWindow(render_window)
visible = vtk.vtkSelectVisiblePoints()
visible.SetRenderer(ren)
picker = vtk.vtkAreaPicker()
def callback_picker(obj, event):
props = obj.GetProp3Ds()
if props.GetNumberOfItems() <= 0:
return
extract_geometry = vtk.vtkExtractGeometry()
extract_geometry.SetImplicitFunction(picker.GetFrustum())
extract_geometry.SetInput(visible.GetInput())
extract_geometry.Update()
unstructured_grid = extract_geometry.GetOutput()
if unstructured_grid.GetPoints().GetNumberOfPoints() <= 0:
return
i = vtk_to_numpy(unstructured_grid.GetPointData().GetArray('i'))
if self.select_only_visible:
visible.Update()
if visible.GetOutput().GetPoints().GetNumberOfPoints() <= 0:
return
i = np.intersect1d(
i,
vtk_to_numpy(
visible.GetOutput().GetPointData().GetArray('i')))
if i.shape[0] <= 0:
return
self.set_labels(self.current_label, i)
picker.AddObserver('EndPickEvent', callback_picker)
iren = self.GetInteractor()
iren.SetRenderWindow(render_window)
iren.SetPicker(picker)
style = vtk.vtkInteractorStyleRubberBandPick()
style.SetCurrentRenderer(ren)
iren.SetInteractorStyle(style)
self.pipeline = locals()
self.setSizePolicy(QtGui.QSizePolicy.Expanding,
QtGui.QSizePolicy.Expanding)
scalars.SetValue(i, numpy.random.random()) poly_data.GetPointData().SetScalars(scalars) poly_data.Modified() print "scalars done" mapper = vtk.vtkPolyDataMapper() mapper.SetInputData(poly_data) print "mapper done" actor = vtk.vtkActor() actor.SetMapper(mapper) print "actor done" renderer = vtk.vtkRenderer() renderer.SetBackground(1., 1., 1.) print "renderer done" render_window = vtk.vtkRenderWindow() render_window.AddRenderer(renderer) print "render window done" interactor = vtk.vtkRenderWindowInteractor() interactor.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick()) interactor.SetRenderWindow(render_window) print "interactor done" renderer.AddActor(actor) print "add actor" render_window.Render() print "render" #interactor.Start() print "start interactor"
def om_display_vtk(f,d = 0,n = 0):
"""
This function displays a VTK::vtk file generated with OpenMEEG.
Such a file defines a polydata, containing points and triangles of a single
mesh. Most often a EEG helmet mesh and associated leadfield.
"""
welcome = """Welcome\n\n
Move the slider to see all sources (columns of the input matrix)\n
Press 'r': To select points/cells.\n"""
# This callback function does updates the mappers for where n is the slider value
def CleanPickData(object, event):
ren.RemoveActor(selactor)
PickData(object, event, selactor, 0, view, text_init)
def SelectSource(object, event): # object will be the slider2D
slidervalue = int(round(object.GetRepresentation().GetValue()))
mapper.GetInput().GetPointData().SetActiveScalars("Potentials-"+str(slidervalue))
renWin.SetWindowName(renWin.GetWindowName()[0:(renWin.GetWindowName().find('-')+1)]+str(slidervalue))
UpdateColorBar(colorBar, mapper)
# A window with an interactor
renWin = vtk.vtkRenderWindow()
renWin.SetSize(600, 600)
iren = vtk.vtkRenderWindowInteractor()
iren.SetRenderWindow(renWin)
iren.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick())
# A picker (to pick points/cells)
picker = vtk.vtkRenderedAreaPicker()
iren.SetPicker(picker)
# Read the input file
reader = vtk.vtkPolyDataReader()
reader.SetFileName(f); reader.Update()
poly = reader.GetOutput()
renWin.SetWindowName(f+' Potentials-'+str(n))
# determine the number of sources
nb_sources = 0
for i in range(poly.GetPointData().GetNumberOfArrays()):
if poly.GetPointData().GetGlobalIds('Potentials-'+str(i)):
nb_sources += 1
if nb_sources == 0: #the file doesn't provide potentials
if not d.__class__ == int:
assert(d.shape[0] == poly.GetNumberOfPoints())
nb_sources = d.shape[1]
pot = [vtk.vtkDoubleArray() for j in range(d.shape[1])]
for j in range(d.shape[1]):
pot[j].SetName('Potentials-'+str(j))
for i in range(d.shape[0]):
pot[j].InsertNextValue(d[i,j])
poly.GetPointData().AddArray(pot[j])
poly.Update()
if not poly.GetPointData().GetGlobalIds('Indices'):
ind = vtk.vtkUnsignedIntArray()
ind.SetName('Indices')
for i in range(poly.GetNumberOfPoints()):
ind.InsertNextValue(i)
poly.GetPointData().AddArray(ind)
poly.GetPointData().SetActiveScalars('Potentials-'+str(n))
mapper = vtk.vtkPolyDataMapper()
colorBar = vtk.vtkScalarBarActor()
actor = vtk.vtkActor()
ren = vtk.vtkRenderer()
mapper.SetInput(poly)
mapper.SetScalarModeToUsePointData(); mapper.Update()
actor.SetMapper(mapper)
ren.AddActor(actor)
if nb_sources:
ren.AddActor2D(colorBar)
UpdateColorBar(colorBar, mapper)
renWin.AddRenderer(ren)
renWin.Render()
if nb_sources > 1:
# Slider
sliderWidget = vtk.vtkSliderWidget()
slider = vtk.vtkSliderRepresentation2D(); slider.SetMaximumValue(nb_sources-1)
slider.SetValue(n); slider.SetEndCapLength(0.01); slider.SetLabelFormat('%1.0f')
slider.SetSliderWidth(0.05); slider.SetSliderLength(1./nb_sources)
slider.GetPoint1Coordinate().SetCoordinateSystemToNormalizedViewport()
slider.GetPoint1Coordinate().SetValue(.0, 0.02)
slider.GetPoint2Coordinate().SetCoordinateSystemToNormalizedViewport()
slider.GetPoint2Coordinate().SetValue(1., 0.02);
sliderWidget.SetInteractor(iren); sliderWidget.SetRepresentation(slider);
sliderWidget.SetAnimationModeToAnimate(); sliderWidget.EnabledOn();
sliderWidget.AddObserver("InteractionEvent", SelectSource);
# Selection
selactor = vtk.vtkActor()
view = vtk.vtkContextView(); view.GetRenderWindow().SetWindowName('Plot')
view.GetRenderWindow().SetPosition(600, 0); view.GetRenderWindow().SetSize(600, 600)
# Welcome text
text_init = vtk.vtkTextActor()
text_init.SetPosition(10, 300)
text_init.SetInput(welcome)
text_init.GetTextProperty().SetColor(1.0, 0.0, 0.0)
view.GetRenderer().AddActor2D(text_init)
view.GetInteractor().Initialize()
iren.AddObserver(vtk.vtkCommand.EndPickEvent,CleanPickData)
iren.Initialize()
iren.Start()
def SetStyle(self, style=None):
if style:
self.style = style
else:
self.style = vtk.vtkInteractorStyleRubberBandPick()
def om_display_vtp(f, n = 0):
"""
This function displays a VTK::vtp file generated with OpenMEEG.
Such a file defines a polydata, containing points and triangles of several
meshes which are labelled through a vtkAbstractArray (Strings) associated to
the cells (mesh names).
Results of the forward problem (or a cortical mapping) can be seen thanks to
arrays associated to points and cells (respectively potentials and normals
currents).
"""
welcome = """Welcome\n\n
Switch the button: To either see Potentials (on points) or Currents (on triangles)\n
Move the slider to see all sources (columns of the input matrix)\n
Press 'r': To select points/cells.\n"""
# This callback function does updates the mappers for where n is the slider value
def CleanPickData(object, event):
for i in range(4):
rens[i].RemoveActor(selactor)
if buttonWidget.GetRepresentation().GetState():
PickData(object, event, selactor, 1, view, text_init)
else:
PickData(object, event, selactor, 0, view, text_init)
def SelectSource(object, event): # object will be the slider2D
slidervalue = int(round(object.GetRepresentation().GetValue()))
for i in range(4):
mappers[i].GetInput().GetPointData().SetActiveScalars("Potentials-"+str(slidervalue))
mappers[i].GetInput().GetCellData().SetActiveScalars("Currents-"+str(slidervalue))
renWin.SetWindowName(renWin.GetWindowName()[0:(renWin.GetWindowName().find('-')+1)]+str(slidervalue))
UpdateColorBar(colorBars[i], mappers[i])
# This callback function does updates the Scalar Mode To Use
def SelectMode(object, event):
# object will be the buttonWidget
for i in range(4):
if (object.GetRepresentation().GetState()):
mappers[i].SetScalarModeToUseCellData()
renWin.SetWindowName(renWin.GetWindowName().replace('Potentials','Currents'))
else:
mappers[i].SetScalarModeToUsePointData()
renWin.SetWindowName(renWin.GetWindowName().replace('Currents','Potentials'))
UpdateColorBar(colorBars[i], mappers[i])
# A window with an interactor
renWin = vtk.vtkRenderWindow()
renWin.SetSize(600, 600)
iren = vtk.vtkRenderWindowInteractor()
iren.SetRenderWindow(renWin)
iren.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick())
# A picker (to pick points/cells)
picker = vtk.vtkRenderedAreaPicker()
iren.SetPicker(picker)
# Read the input file
reader = vtk.vtkXMLPolyDataReader()
reader.SetFileName(f); reader.Update()
poly = reader.GetOutput()
renWin.SetWindowName(f+' Potentials-'+str(n))
# determine the number of sources
nb_sources = 0
for i in range(poly.GetPointData().GetNumberOfArrays()):
if poly.GetPointData().GetGlobalIds('Potentials-'+str(i)):
nb_sources += 1
if n < nb_sources:
poly.GetPointData().SetActiveScalars('Potentials-'+str(n))
poly.GetCellData().SetActiveScalars('Currents-'+str(n))
# Get the mesh names
cell_labels = poly.GetCellData().GetAbstractArray(0)
assert(cell_labels.GetName()=='Names')
s = set(); nb_meshes = 0; cell_ids = list()
for i in range(cell_labels.GetNumberOfValues()):
s.add(cell_labels.GetValue(i))
if len(s)>nb_meshes:
# if a label is added, store the ID for the connectivity filter
cell_ids.append(i)
nb_meshes += 1
# Number of meshes
assert(nb_meshes<=4)
# Multiple viewports: 4
xmins = [0,.5,0,.5]; xmaxs = [0.5,1,0.5,1]; ymins = [0,0,.5,.5]; ymaxs = [0.5,0.5,1,1]
mappers = [vtk.vtkPolyDataMapper() for i in range(4)]
colorBars = [vtk.vtkScalarBarActor() for i in range(4)]
actors = [vtk.vtkActor() for i in range(4)]
rens = [vtk.vtkRenderer() for i in range(4)]
for i in range(4):
rens[i].SetViewport(xmins[i],ymins[i],xmaxs[i],ymaxs[i]);
# Display the meshes
if (i < nb_meshes):
# Create a connectivity filter based on cell seeded region (to display
# only one mesh per viewport)
conn = vtk.vtkPolyDataConnectivityFilter()
conn.SetInput(poly)
conn.SetExtractionModeToCellSeededRegions()
conn.AddSeed(cell_ids[i]); conn.Update()
actor_meshname = vtk.vtkTextActor();
actor_meshname.SetInput(cell_labels.GetValue(cell_ids[i]));
actor_meshname.GetPositionCoordinate().SetCoordinateSystemToNormalizedViewport();
actor_meshname.SetPosition(0.5, 0.85); tprop = actor_meshname.GetTextProperty(); tprop.SetFontSize(30)
tprop.SetFontFamilyToArial(); tprop.SetColor(1, 1, 1); tprop.SetJustificationToCentered()
mappers[i].SetInputConnection(conn.GetOutputPort())
mappers[i].SetScalarModeToUsePointData(); mappers[i].Update()
if nb_sources:
rens[i].AddActor2D(colorBars[i])
actors[i].SetMapper(mappers[i])
rens[i].AddActor2D(actor_meshname)
rens[i].AddActor(actors[i])
if (i == 0):
cam = rens[i].GetActiveCamera()
rens[i].ResetCamera()
else:
# Create a plane to cut
plane = vtk.vtkPlane(); plane.SetOrigin(0,0,0); plane.SetNormal(1,0,0);
# Create cutter
extract = vtk.vtkExtractPolyDataGeometry(); extract.SetInput(poly)
extract.SetImplicitFunction(plane); extract.ExtractBoundaryCellsOff()
mappers[i].SetInputConnection(extract.GetOutputPort())
mappers[i].SetScalarModeToUsePointData(); mappers[i].Update()
# Create plane actor
actors[i].SetMapper(mappers[i])
rens[i].AddActor(actors[i])
rens[i].SetActiveCamera(cam)
if nb_sources:
UpdateColorBar(colorBars[i], mappers[i])
renWin.AddRenderer(rens[i])
renWin.Render();
if nb_sources > 1:
# Slider
sliderWidget = vtk.vtkSliderWidget()
slider = vtk.vtkSliderRepresentation2D(); slider.SetMaximumValue(nb_sources-1)
slider.SetValue(n); slider.SetEndCapLength(0.01); slider.SetLabelFormat('%1.0f')
slider.SetSliderWidth(0.05); slider.SetSliderLength(1./nb_sources)
slider.GetPoint1Coordinate().SetCoordinateSystemToNormalizedViewport()
slider.GetPoint1Coordinate().SetValue(.0 ,0.02)
slider.GetPoint2Coordinate().SetCoordinateSystemToNormalizedViewport()
slider.GetPoint2Coordinate().SetValue(1. ,0.02);
sliderWidget.SetInteractor(iren); sliderWidget.SetRepresentation(slider);
sliderWidget.SetAnimationModeToAnimate(); sliderWidget.EnabledOn();
sliderWidget.AddObserver("InteractionEvent", SelectSource);
if not nb_sources == 0:
# The button for choosing Potentials/Currents
buttonWidget = vtk.vtkButtonWidget()
button = vtk.vtkTexturedButtonRepresentation2D(); button.SetNumberOfStates(2)
tex1r = vtk.vtkImageData(); tex2r = vtk.vtkImageData();
prop = vtk.vtkTextProperty(); prop.SetFontSize(24);
prop.SetColor(1,0,0); prop.SetBold(2); prop.SetShadow(2);
str2im = vtk.vtkFreeTypeStringToImage()
str2im.RenderString(prop,'Potentials',tex1r)
str2im.RenderString(prop,'Currents',tex2r)
button.SetButtonTexture(0, tex1r)
button.SetButtonTexture(1, tex2r)
buttonWidget.SetInteractor(iren);
buttonWidget.SetRepresentation(button);
button.SetPlaceFactor(1);
button.PlaceWidget([0., 100, 50, 500, 0, 0]);
buttonWidget.On()
buttonWidget.AddObserver(vtk.vtkCommand.StateChangedEvent,SelectMode);
# Selection
selactor = vtk.vtkActor()
view = vtk.vtkContextView(); view.GetRenderWindow().SetWindowName('Plot')
view.GetRenderWindow().SetPosition(600, 0); view.GetRenderWindow().SetSize(600, 600)
# Welcome text
text_init = vtk.vtkTextActor()
text_init.SetPosition(10, 300)
text_init.SetInput(welcome)
text_init.GetTextProperty().SetColor(1.0, 0.0, 0.0)
view.GetRenderer().AddActor2D(text_init)
view.GetInteractor().Initialize()
iren.AddObserver(vtk.vtkCommand.EndPickEvent,CleanPickData)
iren.Initialize()
iren.Start()
scalars.SetValue(i, numpy.random.random()) poly_data.GetPointData().SetScalars(scalars) poly_data.Modified() print "scalars done" mapper = vtk.vtkPolyDataMapper() mapper.SetInputData(poly_data) print "mapper done" actor = vtk.vtkActor() actor.SetMapper(mapper) print "actor done" renderer = vtk.vtkRenderer() renderer.SetBackground(1.0, 1.0, 1.0) print "renderer done" render_window = vtk.vtkRenderWindow() render_window.AddRenderer(renderer) print "render window done" interactor = vtk.vtkRenderWindowInteractor() interactor.SetInteractorStyle(vtk.vtkInteractorStyleRubberBandPick()) interactor.SetRenderWindow(render_window) print "interactor done" renderer.AddActor(actor) print "add actor" render_window.Render() print "render" # interactor.Start() print "start interactor"