def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.vtkMINCImageReader(), 'Reading vtkMINCImage.',
(), ('vtkMINCImage',),
replaceDoc=True,
inputFunctions=None, outputFunctions=None)
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(self,
module_manager,
vtk.vtkMINCImageReader(),
'Reading vtkMINCImage.', (),
('vtkMINCImage', ),
replaceDoc=True,
inputFunctions=None,
outputFunctions=None)
if not sys.argv[1:]:
print "Usage: python skullStripper.py image.mnc"
sys.exit(1)
else:
filename = sys.argv[1]
# first, load a script that sets the paths for the modules we load
import paths
import time
import vtk
import airs
ext = os.path.splitext(filename)[1]
if ext == '.mnc' or ext == '.MNC':
reader = vtk.vtkMINCImageReader()
reader.SetFileName(filename)
reader.UpdateWholeExtent()
imageData = reader.GetOutput()
stripper = airs.vtkImageMRIBrainExtractor()
stripper.SetInput( imageData )
# A kludge to handle low axial resolution images
spacing = imageData.GetSpacing()
zres = spacing[2]
if zres > 1.5:
bt = 0.50
#!/usr/bin/env python
import vtk
# Image pipeline
reader = vtk.vtkMINCImageReader()
reader.SetFileName("" + str(VTK_DATA_ROOT) + "/Data/t3_grid_0.mnc")
viewer = vtk.vtkImageViewer()
viewer.SetInputConnection(reader.GetOutputPort())
viewer.SetColorWindow(65535)
viewer.SetColorLevel(0)
#make interface
viewer.Render()
def __init__(self):
vtkImageReaderBase.vtkImageReaderBase.__init__(self)
self.SetImageReader(vtk.vtkMINCImageReader())