def __init__(self):
ActorFactory.ActorFactory.__init__(self)
colors = ((1, 0, 0), (0, 1, 0), (0, 0, 1))
self._Properties = []
for i in range(3):
property = vtk.vtkProperty()
property.SetColor(colors[i])
property.SetAmbient(1.0)
property.SetOpacity(0.3)
self._Properties.append(property)
self._ConeProperties = []
for i in range(3):
property = vtk.vtkProperty()
property.SetColor(colors[i])
property.SetAmbient(1.0)
# property.SetOpacity(0.3)
self._ConeProperties.append(property)
self._Planes = []
self._Cutters = []
self._LineActorsIndex = []
self._ConeActorsIndex = []
self._ConeSize = 24.0
self._Cones = []
for i in range(6):
cone = vtk.vtkConeSource()
cone.SetResolution(2)
cone.SetHeight(self._ConeSize)
cone.SetRadius(self._ConeSize)
self._Cones.append(cone)
def build_constelation(self,mol):
if mol.acteur == None :
MB.showwarning('Info','Select a molecule in the list')
return
if mol.symobs !=None:
mol.acteur.RemoveObserver(mol.symobs)
if mol.lsm!=[]:
for sm in mol.lsm:
self.gfx.renderer.RemoveActor(sm)
mol.lsm=[]
(xmin, xmax, ymin, ymax, zmin, zmax)= self.bounds
sym=open(self.symlistfile,'r')
for l in sym:
ms = l.split()
nbl = int(ms[6][1:])
if nbl not in mol.lnbsm:
continue
ang = [float(ms[0]),float(ms[1]),float(ms[2])]
tra = array([float(ms[3]),float(ms[4]),float(ms[5])])
sm=symmate() #on cree un symmate vide
sm.SetPosition(mol.acteur.GetPosition()) #on assigne la partie translationelle des pv
sm.SetOrientation(mol.acteur.GetOrientation()) #on assigne la partie rotationelle des pv
self.RotaEuler(sm.ut,ang[0],ang[1],ang[2]) #on defini la partie rotationelle de la transformation
sm.ut.Translate(tra[0],tra[1],tra[2]) #on defini la partie translationelle de la transformation
sm.SetUserTransform(sm.ut) #on assigne la transformation a notre symmate
pip = [sm.GetMatrix().GetElement(0,3),sm.GetMatrix().GetElement(1,3),sm.GetMatrix().GetElement(2,3)]#on recupere la partie translationelle de la combinaison de pv et de la transformation (ut)
if (xmin + self.mdbe < pip[0]) and (pip[0] < xmax - self.mdbe) and (ymin + self.mdbe < pip[1]) and (pip[1] < ymax - self.mdbe) and (zmin + self.mdbe < pip[2]) and (pip[2] < zmax - self.mdbe):# on test si pip est dans la boite
sm.nbsym=nbl
if mol.acteur.GetClassName()=='vtkAssembly':# dans le cas ou la molecule independante est un assembly
for i in range(mol.acteur.GetNumberOfPaths()):
tmp=vtk.vtkActor()
tmp.SetMapper(mol.acteur.GetParts().GetItemAsObject(i).GetMapper())
p=vtk.vtkProperty()
#p.SetColor(mol.acteur.GetParts().GetItemAsObject(i).GetProperty().GetColor())
p.SetColor(Map.invcolor(mol.acteur.GetParts().GetItemAsObject(i).GetProperty().GetColor()))
tmp.SetProperty(p)
if mol.mod.type=='mol':
tmp.GetProperty().SetLineWidth(4)
tmp.DragableOff()
tmp.PickableOff()
sm.AddPart(tmp)
else:#cas simple ou la mol ind est composer d un seul objet
tmp=vtk.vtkActor()
tmp.SetMapper(mol.acteur.GetMapper())
p=vtk.vtkProperty()
#p.SetColor(mol.acteur.GetParts().GetItemAsObject(i).GetProperty().GetColor())
p.SetColor(Map.invcolor(mol.acteur.GetProperty().GetColor()))
tmp.SetProperty(p)
if mol.mod.type=='mol':
tmp.GetProperty().SetLineWidth(4)
tmp.DragableOff()
tmp.PickableOff()
sm.AddPart(tmp)
mol.lsm+=[sm]# on ajoute le symmate a la liste des symmate
sym.close()
self.move_sym(mol)
def __init__(self):
ActorFactory.__init__(self)
self._Property = vtk.vtkProperty()
self._Plane = None
self._Line = []
for i in range(4):
self._Line.append(vtk.vtkLineSource())
def __addNucleiToScene(self, reader):
av = self.active_vol
self.mapper = vtk.vtkPolyDataMapper()
self.mapper.SetInputConnection( reader.GetOutputPort() )
# Create an actor
self.actor = vtk.vtkActor()
self.actor.SetMapper(self.mapper)
#center = self.actor.GetCenter()
#cent = self._vdata[av]._electrodes[1].centroid
#self._cameras[av].SetFocalPoint(cent)
self.prop = vtk.vtkProperty()
self.prop.ShadingOn()
self.prop.SetInterpolationToGouraud()
self.prop.EdgeVisibilityOff()
#self.prop.EdgeVisibilityOn()
self.prop.SetDiffuse(0.7)
self.prop.SetSpecular(0.4)
self.prop.SetSpecularPower(20)
self.prop.SetColor(1.0, 1.0, 0)
self.actor.SetProperty(self.prop)
self._renderers[av].AddActor(self.actor)
actv = self.active_vol
self.vol_qvtk_widgets[actv].update()
def test_method_signature(self):
"""Check if VTK method signatures are parsed correctly."""
p = self.p
# Simple tests.
o = vtk.vtkProperty()
self.assertEqual([(["string"], None)], p.get_method_signature(o.GetClassName))
if hasattr(vtk, "vtkArrayCoordinates"):
self.assertEqual(
[
([("float", "float", "float")], None),
([None], (["float", "float", "float"],)),
([None], ("float", "float", "float")),
],
p.get_method_signature(o.GetColor),
)
else:
self.assertEqual(
[([("float", "float", "float")], None), ([None], (("float", "float", "float"),))],
p.get_method_signature(o.GetColor),
)
if hasattr(vtk, "vtkArrayCoordinates"):
self.assertEqual(
[([None], ("float", "float", "float")), ([None], (["float", "float", "float"],))],
p.get_method_signature(o.SetColor),
)
else:
self.assertEqual(
[([None], ("float", "float", "float")), ([None], (("float", "float", "float"),))],
p.get_method_signature(o.SetColor),
)
# Get VTK version to handle changed APIs.
vtk_ver = vtk.vtkVersion().GetVTKVersion()
# Test vtkObjects args.
o = vtk.vtkContourFilter()
sig = p.get_method_signature(o.SetInput)
if len(sig) == 1:
self.assertEqual([([None], ["vtkDataSet"])], sig)
elif vtk_ver[:3] in ["4.2", "4.4"]:
self.assertEqual(
[
([None], ["vtkDataObject"]),
([None], ("int", "vtkDataObject")),
([None], ["vtkDataSet"]),
([None], ("int", "vtkDataSet")),
],
sig,
)
elif vtk_ver[:2] == "5." or vtk_ver[:3] == "4.5":
self.assertEqual([([None], ["vtkDataObject"]), ([None], ("int", "vtkDataObject"))], sig)
self.assertEqual([(["vtkPolyData"], None), (["vtkPolyData"], ["int"])], p.get_method_signature(o.GetOutput))
# Test if function arguments work.
self.assertEqual([(["int"], ("int", "function"))], p.get_method_signature(o.AddObserver))
# This one's for completeness.
self.assertEqual([([None], ["int"])], p.get_method_signature(o.RemoveObserver))
def SetPlanes(self, planes):
"""Set a set of SlicePlaneFactory."""
self._Planes = planes
self._properties = []
for i in range(len(self._Planes)):
self._properties.append(vtk.vtkProperty())
self._UpdateIntersections()
def __init__(self, *args, **kwargs):
VtkRenderArea.__init__(self, *args, **kwargs)
self._CurrentRenderer = None
self._CurrentCamera = None
self._CurrentZoom = 1.0
self._CurrentLight = None
self._ViewportCenterX = 0
self._ViewportCenterY = 0
self._Picker = vtk.vtkCellPicker()
self._PickedAssembly = None
self._PickedProperty = vtk.vtkProperty()
self._PickedProperty.SetColor(1, 0, 0)
self._PrePickedProperty = None
self._OldFocus = None
# need this to be able to handle key_press events.
self.set_flags(gtk.CAN_FOCUS)
# these record the previous mouse position
self._LastX = 0
self._LastY = 0
self.connect('button_press_event', self.OnButtonDown)
self.connect('button_release_event', self.OnButtonUp)
self.connect('motion_notify_event', self.OnMouseMove)
self.connect('key_press_event', self.OnKeyPress)
self.add_events(gtk.gdk.BUTTON_PRESS_MASK |
gtk.gdk.BUTTON_RELEASE_MASK |
gtk.gdk.KEY_PRESS_MASK |
gtk.gdk.POINTER_MOTION_MASK |
gtk.gdk.POINTER_MOTION_HINT_MASK)
def SetElectrodeColor(self, r, g, b):
"""
Set the color for a channel actor
"""
tempProperty = vtk.vtkProperty()
tempProperty.SetColor(r, g, b)
self.channelActors.ApplyProperty(tempProperty)
def __build_cross_lines(self):
renderer = self.slice_data.overlay_renderer
cross = vtk.vtkCursor3D()
cross.AllOff()
cross.AxesOn()
self.cross = cross
c = vtk.vtkCoordinate()
c.SetCoordinateSystemToWorld()
cross_mapper = vtk.vtkPolyDataMapper()
cross_mapper.SetInput(cross.GetOutput())
#cross_mapper.SetTransformCoordinate(c)
p = vtk.vtkProperty()
p.SetColor(1, 0, 0)
cross_actor = vtk.vtkActor()
cross_actor.SetMapper(cross_mapper)
cross_actor.SetProperty(p)
cross_actor.VisibilityOff()
# Only the slices are pickable
cross_actor.PickableOff()
self.cross_actor = cross_actor
renderer.AddActor(cross_actor)
def __init__(self):
ActorFactory.ActorFactory.__init__(self)
# Create a green line
self._Points = vtk.vtkPoints()
self._Lines = vtk.vtkCellArray()
self._Poly = vtk.vtkPolyData()
self._Poly.SetPoints(self._Points)
self._Poly.SetLines(self._Lines)
self._PathProperty = vtk.vtkProperty()
self._PathProperty.SetColor(0, 1, 0)
self._PathProperty.SetOpacity(0.0)
# turn the line into a cylinder
self._tube = vtk.vtkTubeFilter()
# VTK-6
if vtk.vtkVersion().GetVTKMajorVersion() > 5:
self._tube.SetInputData(self._Poly)
else:
self._tube.SetInput(self._Poly)
self._tube.SetNumberOfSides(3)
self._tube.SetRadius(2.5)
def __init__(self, brain_data, isoval=34):
# Setup Surface Rendering
# Gaussian smoothing of surface rendering for aesthetics
# Adds significant delay to rendering
self.cortexSmoother = vtk.vtkImageGaussianSmooth()
self.cortexSmoother.SetDimensionality(3)
self.cortexSmoother.SetRadiusFactors(0.5, 0.5, 0.5)
self.cortexSmoother.SetInput(brain_data.GetOutput())
# Apply a marching cubes algorithm to extract surface contour with
# isovalue of 30 (can change to adjust proper rendering of tissue
self.cortexExtractor = vtk.vtkMarchingCubes()
self.cortexExtractor.SetInput(self.cortexSmoother.GetOutput())
self.cortexExtractor.SetValue(0, isoval)
self.cortexExtractor.ComputeNormalsOn()
# Map/Paint the polydata associated with the surface rendering
self.cortexMapper = vtk.vtkPolyDataMapper()
self.cortexMapper.SetInput(self.cortexExtractor.GetOutput())
self.cortexMapper.ScalarVisibilityOff()
# Color the cortex (RGB)
self.cortexProperty = vtk.vtkProperty()
self.cortexProperty.SetColor(1, 1, 1)
self.cortexProperty.SetOpacity(1);
# Set the actor to adhere to mapped surface and inherit properties
self.SetMapper(self.cortexMapper)
self.SetProperty(self.cortexProperty)
self.cortexExtractor.Update()
def CreateSphereMarkers(self, pubsub_evt):
ball_id = pubsub_evt.data[0]
ballsize = pubsub_evt.data[1]
ballcolour = pubsub_evt.data[2]
coord = pubsub_evt.data[3]
x, y, z = bases.flip_x(coord)
ball_ref = vtk.vtkSphereSource()
ball_ref.SetRadius(ballsize)
ball_ref.SetCenter(x, y, z)
mapper = vtk.vtkPolyDataMapper()
mapper.SetInput(ball_ref.GetOutput())
prop = vtk.vtkProperty()
prop.SetColor(ballcolour)
#adding a new actor for the present ball
self.staticballs.append(vtk.vtkActor())
self.staticballs[ball_id].SetMapper(mapper)
self.staticballs[ball_id].SetProperty(prop)
self.ren.AddActor(self.staticballs[ball_id])
ball_id = ball_id + 1
self.UpdateRender()
def __init__(self):
ActorFactory.ActorFactory.__init__(self)
self.SetName("RectROI")
# colors
self._ActiveColor = (0, 1, 0)
self._HandleColor = tomato
self._LineColor = banana
# Mode 0: Click and Drag to set ROI;
# 1: Control-Click and drag to set ROI
self._Mode = 1
# 4 corner squares
self._Corners = []
for i in range(4):
corner = RectangleSource()
self._Corners.append(corner)
self._CornerProperty = vtk.vtkProperty()
self._CornerProperty.SetOpacity(0)
self._CornerProperty.SetColor(self._HandleColor)
# center cross
self._Center = CrossSource()
self._CenterProperty = vtk.vtkProperty()
self._CenterProperty.SetColor(self._HandleColor)
self._CenterProperty.SetOpacity(0)
# rectangle ROI
self._ROI = RectangleSource()
self._ROIProperty = vtk.vtkProperty()
self._ROIProperty.SetColor(self._LineColor)
self._ROIProperty.SetOpacity(0)
# hack for VCT project: we need to pick the active viewport
self._viewportManager = None
# listener method
self._listenerMethods = []
# x or y translate only for fixed size ROI, used by VCT scanner
self._XOnly = False
self._YOnly = False
self._clearROI = False
def vtkKWSurfaceMaterialPropertyWidgetEntryPoint(parent, win):
app = parent.GetApplication()
# -----------------------------------------------------------------------
# Create the surface property that will be modified by the widget
sprop1 = vtkProperty()
# -----------------------------------------------------------------------
# Create the material widget
# Assign our surface property to the editor
sprop1_widget = vtkKWSurfaceMaterialPropertyWidget()
sprop1_widget.SetParent(parent)
sprop1_widget.Create()
sprop1_widget.SetBalloonHelpString(
"A surface material property widget.")
sprop1_widget.SetProperty(sprop1)
app.Script(
"pack %s -side top -anchor nw -expand n -padx 2 -pady 2",
sprop1_widget.GetWidgetName())
# -----------------------------------------------------------------------
# Create another material widget, in popup mode
# Assign our surface property to the editor
sprop2_widget = vtkKWSurfaceMaterialPropertyWidget()
sprop2_widget.SetParent(parent)
sprop2_widget.PopupModeOn()
sprop2_widget.Create()
sprop2_widget.SetBalloonHelpString(
"A surface material property widget, created in popup mode. Note that "
"it edits the same surface property object as the first widget.")
sprop2_widget.SetProperty(sprop1)
app.Script(
"pack %s -side top -anchor nw -expand n -padx 2 -pady 15",
sprop2_widget.GetWidgetName())
# Both editor are linked to the same surface prop, so they should notify
# each other of any changes to refresh the preview nicely
sprop2_widget.SetPropertyChangingCommand(sprop1_widget, "Update")
sprop2_widget.SetPropertyChangedCommand(sprop1_widget, "Update")
sprop1_widget.SetPropertyChangingCommand(sprop2_widget, "Update")
sprop1_widget.SetPropertyChangedCommand(sprop2_widget, "Update")
return "TypeVTK"
def __init__(self):
self.AddObserver('LeftButtonPressEvent', self.onLeftButtonPressEvent)
self.AddObserver('MouseMoveEvent', self.onMouseMoveEvent)
self.AddObserver('LeftButtonReleaseEvent', self.onLeftButtonReleaseEvent)
self._lastPickedActor = None
self._lastPickedProperty = vtk.vtkProperty()
self._mouseMoved = False
def getLine(self,roi, mrsDefFilePath ):
xr=roi[1]-roi[0]
yr=roi[3]-roi[2]
r=max(xr,yr)
##checks roi and determines the resolution of requested file
if r<50:
resFile="high"
if r>=50 and r<=100:
resFile="medium"
else:
resFile="high"
directory=self._reader.openFile(resFile,mrsDefFilePath)
print(directory)
print('1')
#rel_coastFilePath=self._reader.read(resFile, mrsDefFilePath)
root_path=os.path.abspath( os.path.dirname( mrsDefFilePath ) )
print(root_path)
#combines two directories together
full_coastFilePath=os.path.join( root_path, directory)
sf = shapefile.Reader(full_coastFilePath)
shapes = sf.shapes()
points = vtk.vtkPoints()
lines = vtk.vtkCellArray()
for x in range(len(shapes)):
shape = shapes[x]
nPts = len( shape.points )
idList=vtk.vtkIdList()
for iPt in range(nPts):
pt = shape.points[iPt]
if pt[0]>roi[0] and pt[0]<roi[1]:
if pt[1]>roi[2] and pt[1]<roi[3]:
ptIndex=points.InsertNextPoint(pt[0], pt[1], 0.0 )
idList.InsertNextId(ptIndex)
lines.InsertNextCell(idList)
polygon = vtk.vtkPolyData()
polygon.SetPoints(points)
polygon.SetLines(lines)
polygonMapper = vtk.vtkPolyDataMapper()
polygonMapper.SetInputConnection(polygon.GetProducerPort())
polygonActor = vtk.vtkActor()
polygonActor.SetMapper(polygonMapper)
property = vtk.vtkProperty()
property.SetColor(self._rgb)
property.SetLineWidth(self._linewidth)
polygonActor.SetProperty(property)
return polygonActor
def test_method_signature(self):
"""Check if VTK method signatures are parsed correctly."""
p = self.p
# Simple tests.
o = vtk.vtkProperty()
self.assertEqual([(['string'], None)],
p.get_method_signature(o.GetClassName))
if hasattr(vtk, 'vtkArrayCoordinates'):
self.assertEqual([([('float', 'float', 'float')], None),
([None], (['float', 'float', 'float'],)),
([None], ('float', 'float', 'float'))],
p.get_method_signature(o.GetColor))
else:
self.assertEqual([([('float', 'float', 'float')], None),
([None], (('float', 'float', 'float'),))],
p.get_method_signature(o.GetColor))
if hasattr(vtk, 'vtkArrayCoordinates'):
self.assertEqual([([None], ('float', 'float', 'float')),
([None], (['float', 'float', 'float'],))],
p.get_method_signature(o.SetColor))
else:
self.assertEqual([([None], ('float', 'float', 'float')),
([None], (('float', 'float', 'float'),))],
p.get_method_signature(o.SetColor))
# Get VTK version to handle changed APIs.
vtk_ver = vtk.vtkVersion().GetVTKVersion()
# Test vtkObjects args.
o = vtk.vtkContourFilter()
sig = p.get_method_signature(o.SetInput)
if len(sig) == 1:
self.assertEqual([([None], ['vtkDataSet'])],
sig)
elif vtk_ver[:3] in ['4.2', '4.4']:
self.assertEqual([([None], ['vtkDataObject']),
([None], ('int', 'vtkDataObject')),
([None], ['vtkDataSet']),
([None], ('int', 'vtkDataSet'))
], sig)
elif vtk_ver[:2] == '5.' or vtk_ver[:3] == '4.5':
self.assertEqual([([None], ['vtkDataObject']),
([None], ('int', 'vtkDataObject')),
], sig)
self.assertEqual([(['vtkPolyData'], None),
(['vtkPolyData'], ['int'])],
p.get_method_signature(o.GetOutput))
# Test if function arguments work.
self.assertEqual([(['int'], ('int', 'function'))],
p.get_method_signature(o.AddObserver))
# This one's for completeness.
self.assertEqual([([None], ['int'])],
p.get_method_signature(o.RemoveObserver))
def __init__(self, parent, ident):
self.ren = None # The Renderer
self.rwi = None # The reneder Windows
self.action = "" # No action
# create wx.Frame and wxVTKRenderWindowInteractor to put in it
wx.Frame.__init__(self, parent, ident, "DRE wxVTK demo", size=(400,400))
# create a menuBar
menuBar = wx.MenuBar()
# add a File Menu
menuFile = wx.Menu()
itemQuit = menuFile.Append(-1, "&Quit", "Quit application")
self.Bind(wx.EVT_MENU, self.OnQuit, itemQuit)
menuBar.Append(menuFile, "&File")
# add an Action Menu
# menuAction = wx.Menu()
# itemSelect = menuAction.AppendCheckItem(-1, "&Select\tS", "Select an object")
# self.Bind(wx.EVT_MENU, self.OnSelect, itemSelect)
# menuBar.Append(menuAction, "&File")
self.SetMenuBar(menuBar)
self.statusBar = self.CreateStatusBar()
self.statusBar.SetFieldsCount(2)
self.statusBar.SetStatusWidths([-4, -1])
# the render is a 3D Scene
self.ren = vtk.vtkRenderer()
self.ren.SetBackground(0.2, 0.5, 0.7)
# create the world
self.CreateWorld(self.ren)
#make sure the RWI sizes to fill the frame
self.rwi = wxVTKRenderWindow(self, -1)
self.rwi.GetRenderWindow().AddRenderer(self.ren)
# trap mouse events
self.rwi.Bind(wx.EVT_LEFT_DOWN, self.OnLeftDown)
self.rwi.Bind(wx.EVT_LEFT_UP, self.OnLeftUp)
self.rwi.Bind(wx.EVT_LEFT_DCLICK, self.OnSelect)
self.rwi.Bind(wx.EVT_MOTION, self.OnMotion)
# store the Picker
self.picker = vtk.vtkCellPicker()
self.pickedActor = None
self.pickedProperty = None
self.selectProperty = vtk.vtkProperty()
self.selectProperty.SetColor(1,0,0)
def Initialize(self):
'''
@rtype: None
'''
vtkPythonMetaDataSet.Initialize(self)
if not self.getDataSet():
return
if not isinstance(self.getProperty(), vtk.vtkObject):
return
property = vtk.vtkProperty.SafeDownCast(self.getProperty())
if not property:
property = vtk.vtkProperty()
self.setProperty(property)
def Sphere(self, x, y, z):
''' create a cylinder and return the actor '''
obj = vtk.vtkSphereSource()
obj.SetThetaResolution(16)
obj.SetPhiResolution(16)
self.MapObject(obj)
prop = vtk.vtkProperty()
prop.SetColor(0.3, 0.5, 0.8)
prop.SetAmbientColor(0.5, 0.5, 0)
prop.SetDiffuseColor(0, 0.8, 0.5)
prop.SetSpecular(0.5)
self.actor.SetProperty(prop)
self.actor.SetPosition(x, y, z)
def __init__(self):
ActorFactory.ActorFactory.__init__(self)
# share property across all the actors
self._sphere = vtk.vtkSphereSource()
self._sphere.SetThetaResolution(40)
self._sphere.SetPhiResolution(40)
self._visibility = True
self._Property = vtk.vtkProperty()
self._Property.SetColor(1, 1, 0)
self._bounds = (-1, 1, -1, 1, -1, 1)
def Sphere(self, x, y, z):
''' create a cylinder and return the actor '''
obj = vtk.vtkSphereSource()
obj.SetThetaResolution(16)
obj.SetPhiResolution(16)
actor = self.MapObject(obj)
prop = vtk.vtkProperty()
prop.SetColor(0.5, 0.5, 0.5)
prop.SetAmbientColor(0.5, 0.5, 0)
prop.SetDiffuseColor(0.8, 0.3, 0.3)
prop.SetSpecular(0.5)
actor.SetProperty(prop)
actor.SetPosition(x, y, z)
def CreateBallReference(self):
self.ball_reference = vtk.vtkSphereSource()
self.ball_reference.SetRadius(5)
mapper = vtk.vtkPolyDataMapper()
mapper.SetInput(self.ball_reference.GetOutput())
p = vtk.vtkProperty()
p.SetColor(1, 0, 0)
self.ball_actor = vtk.vtkActor()
self.ball_actor.SetMapper(mapper)
self.ball_actor.SetProperty(p)
def __init__(self):
ActorFactory.ActorFactory.__init__(self)
# share property across all the actors
self._sphere = vtk.vtkSphereSource()
self._sphere.SetThetaResolution(40)
self._sphere.SetPhiResolution(40)
self._visibility = True
self._Property = vtk.vtkProperty()
self._Property.SetColor(1, 1, 0)
self._bounds = (-1, 1, -1, 1, -1, 1)
def __init__(self, VolumneRendererWindow, selectedColor, PixX, PixY, PixZ):
super(MouseInteractorHighLightActor, self).__init__(self)
self.selectedColor = selectedColor
self.VolumneRendererWindow = VolumneRendererWindow
self.AddObserver("LeftButtonPressEvent", self.leftButtonPressEvent)
self.PixX = PixX
self.PixY = PixY
self.PixZ = PixZ
self.LastPickedActor = None
self.LastPickedProperty = vtk.vtkProperty()
def Disc(pos=(0, 0, 0),
normal=(0, 0, 1),
r1=0.5,
r2=1,
c="coral",
bc="darkgreen",
lw=1,
alpha=1,
res=12):
"""
Build a 2D disc of internal radius `r1` and outer radius `r2`,
oriented perpendicular to `normal`.
|Disk|
"""
ps = vtk.vtkDiskSource()
ps.SetInnerRadius(r1)
ps.SetOuterRadius(r2)
ps.SetRadialResolution(res)
ps.SetCircumferentialResolution(res * 6) # ~2pi
ps.Update()
axis = np.array(normal) / np.linalg.norm(normal)
theta = np.arccos(axis[2])
phi = np.arctan2(axis[1], axis[0])
t = vtk.vtkTransform()
t.PostMultiply()
t.RotateY(theta * 57.3)
t.RotateZ(phi * 57.3)
tf = vtk.vtkTransformPolyDataFilter()
tf.SetInputData(ps.GetOutput())
tf.SetTransform(t)
tf.Update()
pd = tf.GetOutput()
mapper = vtk.vtkPolyDataMapper()
mapper.SetInputData(pd)
actor = Actor() # vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().SetColor(colors.getColor(c))
actor.GetProperty().SetOpacity(alpha)
actor.GetProperty().SetLineWidth(lw)
actor.GetProperty().SetInterpolationToFlat()
if bc: # defines a specific color for the backface
backProp = vtk.vtkProperty()
backProp.SetDiffuseColor(colors.getColor(bc))
backProp.SetOpacity(alpha)
actor.SetBackfaceProperty(backProp)
actor.SetPosition(pos)
return actor
def __init__(self, render, label, color):
self.render = render
self.colors = {
'Marine Blue': [0.1, 0.2, 0.4],
'Deep Blue': [0.2, 0.2, 1.0],
'Red': [1.0, 0.0, 0.0],
'Yellow': [1.0, 1.0, 0.0],
'Green': [0.0, 1.0, 0.0],
'Orange': [1.0, 0.5, 0.0],
'Magenta': [1.0, 0.0, 1.0],
'Grey': [0.5, 0.5, 0.5],
'Black': [0.0, 0.0, 0.0],
'Cyan': [0.0, 1.0, 1.0],
'Turquoise': [0.0, 0.5, 0.5],
'White': [1.0, 1.0, 1.0],
'Light green': [0.5, 1.0, 0.5],
}
if color:
self.color = color
else:
self.color = "Yellow"
self.__isSelected = False
self.points = vtk.vtkPoints()
self.points.SetDataTypeToFloat()
self.property = vtk.vtkProperty()
self.actor = vtk.vtkActor()
self.actor.SetProperty(self.property)
self.label = label
self.labels = vtk.vtkVectorText()
self.labels.SetText(label)
self.labelProp = vtk.vtkProperty()
self.labelActor = vtk.vtkFollower()
def Cone(self, x, y, z):
''' create a cylinder and return the actor '''
obj = vtk.vtkConeSource()
self.MapObject(obj)
# self.actor.GetProperty().SetColor(0.3, 0.8, 0.5)
# self.actor.GetProperty().SetOpacity(0.35)
# self.actor.GetProperty().SetSpecular(0.5)
prop = vtk.vtkProperty()
prop.SetColor(0.3, 0.8, 0.5)
prop.SetAmbientColor(1, 1, 0)
prop.SetOpacity(0.35)
prop.SetSpecular(0.5)
self.actor.SetProperty(prop)
self.actor.SetPosition(x, y, z)
def __init__(self, parent=None):
#self.AddObserver("LeftButtonPressEvent", self.leftButtonPressEvent)
#self.AddObserver("KeyPressEvent", self.onKeyPress)
#self.AddObserver("OnChar", self.onChar)
self.AddObserver("CharEvent", self.onChar)
self.LastPickedActor = None
self.LastPickedProperty = vtk.vtkProperty()
self.currentactor = None
self.leftag = None
self.txt_target = None
self.txt_startp = None
self.startp = None
self.target = None
def Cone(self, x, y, z):
''' create a cylinder and return the actor '''
obj = vtk.vtkConeSource()
actor = self.MapObject(obj)
# self.actor.GetProperty().SetColor(0.3, 0.8, 0.5)
# self.actor.GetProperty().SetOpacity(0.35)
# self.actor.GetProperty().SetSpecular(0.5)
prop = vtk.vtkProperty()
prop.SetColor(0.3, 0.8, 0.5)
prop.SetAmbientColor(1, 1, 0)
prop.SetOpacity(0.35)
prop.SetSpecular(0.5)
actor.SetProperty(prop)
actor.SetPosition(x, y, z)
def __init__(self, plugin):
super().__init__(plugin)
self._file_name = None
self._load_thread = None
self._components = None
self._component_color = {}
self._component_bounds = {}
self._actors = {}
self._silhouette_actors = {}
self._caption_actors = {}
self._show_captions = False
self._actor_to_comp_name = {}
self._render_mode = self.plugin.settings.value("window/render_mode",
self.SHADED)
self._bnds = None
self._pps_actors = {}
self._pps_caption_actors = {}
self._last_picked_actor = None
self._last_picked_property = vtk.vtkProperty()
self.setupWidgets()
self.setupMenuBar()
self.setAcceptDrops(True)
self.setCentralWidget(self._frame)
self.updateWindowTitle()
self._vtk_render_window = self._vtk_widget.GetRenderWindow()
self._vtk_interactor = self._vtk_render_window.GetInteractor()
self._style = OtterInteractorStyle3D(self)
self._vtk_interactor.SetInteractorStyle(self._style)
# TODO: set background from preferences/templates
self._vtk_renderer.SetBackground([0.98, 0.98, 0.98])
# set anti-aliasing on
self._vtk_renderer.SetUseFXAA(True)
self._vtk_render_window.SetMultiSamples(1)
self._vtk_interactor.Initialize()
self._vtk_interactor.Start()
self._setupOrientationMarker()
self._setupCubeAxisActor()
self.show()
self._update_timer = QtCore.QTimer()
self._update_timer.timeout.connect(self.onUpdateWindow)
self._update_timer.start(250)
def main():
colors = vtk.vtkNamedColors()
bounds = [-10.0, 10.0, 10.0, 20.0, -5.0, 5.0]
boxSource = vtk.vtkTessellatedBoxSource()
boxSource.SetLevel(3)
boxSource.QuadsOn()
boxSource.SetBounds(bounds)
boxSource.SetOutputPointsPrecision(vtk.vtkAlgorithm.SINGLE_PRECISION)
shrink = vtk.vtkShrinkFilter()
shrink.SetInputConnection(boxSource.GetOutputPort())
shrink.SetShrinkFactor(.8)
# Create a mapper and actor.
mapper = vtk.vtkDataSetMapper()
mapper.SetInputConnection(shrink.GetOutputPort())
back = vtk.vtkProperty()
back.SetColor(colors.GetColor3d('Tomato'))
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().EdgeVisibilityOn()
actor.GetProperty().SetColor(colors.GetColor3d('Banana'))
actor.SetBackfaceProperty(back)
# Create a renderer, render window, and interactor.
renderer = vtk.vtkRenderer()
renderWindow = vtk.vtkRenderWindow()
renderWindow.AddRenderer(renderer)
renderWindowInteractor = vtk.vtkRenderWindowInteractor()
renderWindowInteractor.SetRenderWindow(renderWindow)
# Add the actors to the scene.
renderer.AddActor(actor)
renderer.SetBackground(colors.GetColor3d('Silver'))
renderer.ResetCamera()
renderer.GetActiveCamera().Azimuth(30)
renderer.GetActiveCamera().Elevation(30)
renderer.ResetCameraClippingRange()
# Render and interact.
renderWindow.SetSize(640, 480)
renderWindow.SetWindowName('TessellatedBoxSource')
renderWindow.Render()
renderWindowInteractor.Start()
def __init__(self):
ActorFactory.ActorFactory.__init__(self)
# share property across all the actors
self._cylinder = vtk.vtkCylinderSource()
self._cylinder.SetResolution(40)
self._cylinder.CappingOn()
self._Property = vtk.vtkProperty()
self._Property.SetColor(1, 1, 0)
self._bounds = (-1, 1, -1, 1, -1, 1)
self._orientation = 'z'
# self.GetTransform().RotateX(90)
self._visibility = True
def __init__(self):
ActorFactory.ActorFactory.__init__(self)
self._WireFrameCube = WireFrameCubeFactory.WireFrameCubeFactory()
self._SolidCube = EVSSolidCubeFactory.EVSSolidCubeFactory()
self._CubePropertiesAreSet = 0
self._SphereMark1 = SphereMarkFactory.SphereMarkFactory()
self._SphereMark1IsSet = 0
self._SphereMark2 = SphereMarkFactory.SphereMarkFactory()
self._SphereMark2IsSet = 0
self._Property = vtk.vtkProperty()
def __init__(self):
ActorFactory.ActorFactory.__init__(self)
# share property across all the actors
self._cylinder = vtk.vtkCylinderSource()
self._cylinder.SetResolution(40)
self._cylinder.CappingOn()
self._Property = vtk.vtkProperty()
self._Property.SetColor(1, 1, 0)
self._bounds = (-1, 1, -1, 1, -1, 1)
self._orientation = 'z'
# self.GetTransform().RotateX(90)
self._visibility = True
def __init__(self):
ActorFactory.ActorFactory.__init__(self)
self._WireFrameCube = WireFrameCubeFactory.WireFrameCubeFactory()
self._SolidCube = EVSSolidCubeFactory.EVSSolidCubeFactory()
self._CubePropertiesAreSet = 0
self._SphereMark1 = SphereMarkFactory.SphereMarkFactory()
self._SphereMark1IsSet = 0
self._SphereMark2 = SphereMarkFactory.SphereMarkFactory()
self._SphereMark2IsSet = 0
self._Property = vtk.vtkProperty()
def __init__(self):
ActorFactory.ActorFactory.__init__(self)
# the default is not apply any transforms
self._t = None
# Create the line
self._Line = vtk.vtkLineSource()
self._Line.SetResolution(25)
self._LineProperty = vtk.vtkProperty()
self._LineProperty.SetColor(
0.933, 0.505, 0.0) # default to orange
self.SetLineOpacity(0.0)
self._LineLength = 0
self._MarkersEnabled = True
# Create the spheres
self._Mark1 = ConeMarkerFactory2.ConeMarkerFactory2()
self._Mark2 = ConeMarkerFactory2.ConeMarkerFactory2()
self._Mark1.SetSize(16)
self._Mark2.SetSize(16)
self._Mark1.SetColor(0.0, 0.6, 1.0) # default to blue
self._Mark2.SetColor(0.0, 1.0, 0.0) # default to green
# Add them as children of this factory
self.AddChild(self._Mark1)
self.AddChild(self._Mark2)
self.HideEndMarkers()
# Set opacity of balls to 0.0
self._Mark1IsSet = 0
self._Mark2IsSet = 0
self._Mark1Position = None
self._Mark2Position = None
self._ElementSize = 1 # Brad made this one instead of zero
self._SelectedActor = None
self._lastSelectedMark = None
self._sMeasurementUnit = 'pixels'
self.BindEvent("<ButtonPress>", self.StartMoveMark)
self.BindEvent("<ButtonRelease>", self.StopMoveMark)
self.BindEvent("<B2-Motion>", self.DoMoveMark)
self.BindEvent("<B1-Motion>", self.DoMoveMark)
self.BindEvent("<Key-Delete>", self.ClearLineSegment)
def makeCustomAxes(self, outline, outlinefilter):
""" create custom axes """
prop = vtk.vtkProperty()
prop.SetColor(self.fgColor)
x = vtk.vtkAxisActor()
x.SetAxisTypeToX()
# x.SetAxisPositionToMinMin()
x.SetCamera(self.renderer.GetActiveCamera())
x.SetBounds(outline.GetBounds())
x.SetProperty(prop)
x.SetRange(self.XLimit)
x.SetPoint1(outline.GetBounds()[0], outline.GetBounds()[2], outline.GetBounds()[4])
x.SetPoint2(outline.GetBounds()[1], outline.GetBounds()[2], outline.GetBounds()[4])
return x
def __init__(self):
self.colour = (0.0, 0.0, 1.0)
self.opacity = 1
self.radius = 15.0
#self.position = (0.5,0.5, 1)
self.points = []
self.orientation = "AXIAL"
self.spacing = (1, 1, 1)
self.mapper = vtk.vtkPolyDataMapper()
self.actor = vtk.vtkActor()
self.property = vtk.vtkProperty()
self.__build_actor()
self.__calculate_area_pixels()
def setElectrodeNoiseVisible(self):
''' Set actor properties based on electrodes selected for viewing. '''
self.electrode_centroid_clustering.getLabelsForElectrodes(self._electrodes)
# assign electrode colors
for elect in self._electrodes:
prop = vtk.vtkProperty()
if elect.clabel == -1:
prop.SetColor(1, 1, 1)
elect.polygonActor.VisibilityOn()
elect.polygonActor.SetProperty(prop)
else:
elect.polygonActor.VisibilityOff()
self.appwin.updateRenderQVTKWin()
def highlight(self, actors):
for actor in actors:
try:
self.__renderer.pointsActors[actor] #if
except:
try:
self.__renderer.elementsActors[actor]
except:
continue
if actor in self.__selectedActorsProperties:
continue
current_property = vtk.vtkProperty()
current_property.DeepCopy(actor.GetProperty())
self.__selectedActorsProperties[actor] = current_property
actor.GetProperty().SetColor(255,0,0)
self.GetInteractor().GetRenderWindow().Render()
def main(argv):
if len(argv) < 2:
print "usage:", argv[0], " data.vtk"
exit(1)
data_fn = argv[1]
reader = vtk.vtkStructuredPointsReader()
reader.SetFileName(data_fn)
reader.Update()
data = reader.GetOutput()
skin = vtk.vtkMarchingCubes()
skin.ComputeNormalsOn()
skin.ComputeGradientsOn()
skin.SetValue(0, rgb[0][0])
skin.SetInput(data)
skin_mapper = vtk.vtkPolyDataMapper()
skin_mapper.SetInputConnection(skin.GetOutputPort())
skin_mapper.ScalarVisibilityOff()
skin_actor = vtk.vtkActor()
skin_property = vtk.vtkProperty()
skin_property.SetColor(rgb[0][1], rgb[0][2], rgb[0][3])
skin_property.SetOpacity(opacity[0][1])
skin_actor.SetProperty(skin_property)
skin_actor.SetMapper(skin_mapper)
bone = vtk.vtkMarchingCubes()
bone.ComputeNormalsOn()
bone.ComputeGradientsOn()
bone.SetValue(0, rgb[1][0])
bone.SetInput(data)
bone_mapper = vtk.vtkPolyDataMapper()
bone_mapper.SetInputConnection(bone.GetOutputPort())
bone_mapper.ScalarVisibilityOff()
bone_actor = vtk.vtkActor()
bone_actor.GetProperty().SetColor(rgb[1][1], rgb[1][2], rgb[1][3])
bone_actor.GetProperty().SetOpacity(opacity[1][1])
bone_actor.SetMapper(bone_mapper)
renderer = vtk.vtkRenderer()
renderWin = vtk.vtkRenderWindow()
renderWin.AddRenderer(renderer)
renderInteractor = vtk.vtkRenderWindowInteractor()
renderInteractor.SetRenderWindow(renderWin)
renderer.AddActor(skin_actor)
#renderer.AddActor(bone_actor)
renderer.SetBackground(0, 0, 0)
renderWin.SetSize(400, 400)
renderInteractor.Initialize()
renderWin.Render()
renderInteractor.Start()
def main(argv):
if len(argv) < 2:
print "usage:",argv[0]," data.vtk"
exit(1)
data_fn = argv[1]
reader = vtk.vtkStructuredPointsReader()
reader.SetFileName(data_fn)
reader.Update()
data = reader.GetOutput()
skin = vtk.vtkMarchingCubes()
skin.ComputeNormalsOn()
skin.ComputeGradientsOn()
skin.SetValue(0, rgb[0][0])
skin.SetInput(data)
skin_mapper = vtk.vtkPolyDataMapper()
skin_mapper.SetInputConnection(skin.GetOutputPort())
skin_mapper.ScalarVisibilityOff()
skin_actor = vtk.vtkActor()
skin_property = vtk.vtkProperty()
skin_property.SetColor(rgb[0][1], rgb[0][2], rgb[0][3])
skin_property.SetOpacity(opacity[0][1])
skin_actor.SetProperty(skin_property)
skin_actor.SetMapper(skin_mapper)
bone = vtk.vtkMarchingCubes()
bone.ComputeNormalsOn()
bone.ComputeGradientsOn()
bone.SetValue(0, rgb[1][0])
bone.SetInput(data)
bone_mapper = vtk.vtkPolyDataMapper()
bone_mapper.SetInputConnection(bone.GetOutputPort())
bone_mapper.ScalarVisibilityOff()
bone_actor = vtk.vtkActor()
bone_actor.GetProperty().SetColor(rgb[1][1], rgb[1][2], rgb[1][3])
bone_actor.GetProperty().SetOpacity(opacity[1][1])
bone_actor.SetMapper(bone_mapper)
renderer = vtk.vtkRenderer()
renderWin = vtk.vtkRenderWindow()
renderWin.AddRenderer(renderer)
renderInteractor = vtk.vtkRenderWindowInteractor()
renderInteractor.SetRenderWindow(renderWin)
renderer.AddActor(skin_actor)
#renderer.AddActor(bone_actor)
renderer.SetBackground(0,0,0)
renderWin.SetSize(400, 400)
renderInteractor.Initialize()
renderWin.Render()
renderInteractor.Start()
def actors_step_2(contour_filter_leg):
"""
Creates the visualization actors for step 2
:param contour_filter_leg: The data SLC from the leg
:return: A list with the leg actor
"""
# Clipping the knee skin with a sphere
actor_leg, _ = clipping_skin_with_sphere(contour_filter_leg)
# transparency and backface property
prop = vtk.vtkProperty()
prop.SetColor(colors.GetColor3d("SkinColor"))
actor_leg.GetProperty().SetOpacity(0.666)
actor_leg.SetBackfaceProperty(prop)
return [actor_leg]
def main():
colors = vtk.vtkNamedColors()
file_name = get_program_parameters()
# Read the source file.
reader = vtk.vtkXMLUnstructuredGridReader()
reader.SetFileName(file_name)
reader.Update() # Needed because of GetScalarRange
output = reader.GetOutput()
# scalar_range = output.GetScalarRange()
# Create the mapper that corresponds the objects of the vtk.vtk file
# into graphics elements
mapper = vtk.vtkDataSetMapper()
mapper.SetInputData(output)
# mapper.SetScalarRange(scalar_range)
mapper.ScalarVisibilityOff()
# Create the Actor
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().EdgeVisibilityOn()
actor.GetProperty().SetLineWidth(2.0)
actor.GetProperty().SetColor(colors.GetColor3d("MistyRose"))
backface = vtk.vtkProperty()
backface.SetColor(colors.GetColor3d('Tomato'))
actor.SetBackfaceProperty(backface)
# Create the Renderer
renderer = vtk.vtkRenderer()
renderer.AddActor(actor)
renderer.SetBackground(colors.GetColor3d('Wheat'))
# Create the RendererWindow
renderer_window = vtk.vtkRenderWindow()
renderer_window.SetSize(640, 480)
renderer_window.AddRenderer(renderer)
renderer_window.SetWindowName('ReadUnstructuredGrid')
# Create the RendererWindowInteractor and display the vtk_file
interactor = vtk.vtkRenderWindowInteractor()
interactor.SetRenderWindow(renderer_window)
interactor.Initialize()
interactor.Start()
class STLComponent:
prop = vtk.vtkProperty()
@classmethod
def SetProperty(self, color, diffuse, specular, specularPower):
self.prop.SetColor(color[0], color[1], color[2])
self.prop.SetDiffuse(diffuse)
self.prop.SetSpecular(specular)
self.prop.SetSpecularPower(specularPower)
def __init__(self, name):
self.reader = vtk.vtkSTLReader()
self.reader.SetFileName(name)
self.mapper = vtk.vtkPolyDataMapper()
self.mapper.SetInputConnection(self.reader.GetOutputPort())
self.actor = vtk.vtkActor()
self.actor.SetMapper(self.mapper)
self.actor.SetProperty(self.prop)
def box(self, scale=1):
"""Return the bounding box as a new ``Mesh``.
:param float scale: box size can be scaled by a factor
.. hint:: |latex.py|_
"""
b = self.GetBounds()
from vtkplotter.shapes import Box
pos = (b[0] + b[1]) / 2, (b[3] + b[2]) / 2, (b[5] + b[4]) / 2
length, width, height = b[1] - b[0], b[3] - b[2], b[5] - b[4]
oa = Box(pos, length * scale, width * scale, height * scale, c='gray')
if isinstance(self.GetProperty(), vtk.vtkProperty):
pr = vtk.vtkProperty()
pr.DeepCopy(self.GetProperty())
oa.SetProperty(pr)
oa.wireframe()
return oa
def sphere(radius, center, resolution, color, position):
sphereSource = vtk.vtkSphereSource()
sphereSource.SetCenter(center)
sphereSource.SetRadius(radius)
sphereSource.SetThetaResolution(resolution)
sphereMapper = vtk.vtkPolyDataMapper()
sphereMapper.SetInputConnection(sphereSource.GetOutputPort())
property = vtk.vtkProperty()
property.SetColor(color)
sphereActor = vtk.vtkActor()
sphereActor.SetMapper(sphereMapper)
sphereActor.SetProperty(property)
sphereActor.SetPosition(position)
return sphereActor
def main():
colors = vtk.vtkNamedColors()
# Create a cube.
cubeSource = vtk.vtkCubeSource()
shrink = vtk.vtkShrinkFilter()
shrink.SetInputConnection(cubeSource.GetOutputPort())
shrink.SetShrinkFactor(0.9)
# Create a mapper and actor.
mapper = vtk.vtkDataSetMapper()
mapper.SetInputConnection(shrink.GetOutputPort())
back = vtk.vtkProperty()
back.SetColor(colors.GetColor3d('Tomato'))
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().EdgeVisibilityOn()
actor.GetProperty().SetColor(colors.GetColor3d('Banana'))
actor.SetBackfaceProperty(back)
# Create a renderer, render window, and interactor.
renderer = vtk.vtkRenderer()
renderWindow = vtk.vtkRenderWindow()
renderWindow.AddRenderer(renderer)
renderWindowInteractor = vtk.vtkRenderWindowInteractor()
renderWindowInteractor.SetRenderWindow(renderWindow)
# Add the actors to the scene
renderer.AddActor(actor)
renderer.SetBackground(colors.GetColor3d('Silver'))
renderer.ResetCamera()
renderer.GetActiveCamera().Azimuth(30)
renderer.GetActiveCamera().Elevation(30)
renderer.ResetCameraClippingRange()
# Render and interact
renderWindow.SetWindowName('ShrinkCube')
renderWindow.Render()
renderWindowInteractor.Start()
def CreateBallReference(self):
MRAD = 3.0
proj = prj.Project()
s = proj.spacing
# The sphere's radius will be MRAD times bigger than the media of the
# spacing values.
r = (s[0] + s[1] + s[2]) / 3.0 * MRAD
self.ball_reference = vtk.vtkSphereSource()
self.ball_reference.SetRadius(r)
mapper = vtk.vtkPolyDataMapper()
mapper.SetInput(self.ball_reference.GetOutput())
p = vtk.vtkProperty()
p.SetColor(1, 0, 0)
self.ball_actor = vtk.vtkActor()
self.ball_actor.SetMapper(mapper)
self.ball_actor.SetProperty(p)
def extractLargestRegion(actor, legend=None):
'''Keep only the largest connected part of a mesh and discard all the smaller pieces.
[**Example**](https://github.com/marcomusy/vtkplotter/blob/master/examples/basic/largestregion.py)
'''
conn = vtk.vtkConnectivityFilter()
conn.SetExtractionModeToLargestRegion()
conn.ScalarConnectivityOff()
poly = actor.polydata(True)
conn.SetInputData(poly)
conn.Update()
epoly = conn.GetOutput()
if legend is True:
legend = actor.legend
eact = Actor(epoly, legend)
pr = vtk.vtkProperty()
pr.DeepCopy(actor.GetProperty())
eact.SetProperty(pr)
return eact
def cone(height, center, radius, resolution, color, position):
coneSource = vtk.vtkConeSource()
coneSource.SetCenter(center)
coneSource.SetHeight(height)
coneSource.SetRadius(radius)
coneSource.SetResolution(resolution)
coneMapper = vtk.vtkPolyDataMapper()
coneMapper.SetInputConnection(coneSource.GetOutputPort())
property = vtk.vtkProperty()
property.SetColor(color)
coneActor = vtk.vtkActor()
coneActor.SetMapper(coneMapper)
coneActor.SetProperty(property)
coneActor.SetPosition(position)
return coneActor
def __init__(self, item_actor, plane, lut):
self.cutter = vtkCutter()
self.cutter.SetCutFunction(plane)
self.cutter.SetInputConnection(item_actor.reader.GetOutputPort())
self.cutter.Update()
self.mapper = vtkDataSetMapper()
self.mapper.ScalarVisibilityOn()
self.mapper.SetLookupTable(lut)
self.mapper.SetInputConnection(self.cutter.GetOutputPort())
back = vtkProperty()
back.SetColor(100, 100, 100)
self.GetProperty().SetColor(1, 0, 0)
self.GetProperty().EdgeVisibilityOff()
self.GetProperty().SetLineWidth(3)
self.SetMapper(self.mapper)
self.SetBackfaceProperty(back)
def triangleFilter(actor, verts=True, lines=True):
'''
Convert actor polygons and strips to triangles.
Returns a new vtkActor.
'''
from vtkplotter.actors import Actor
poly = actor.polydata(False)
tf = vtk.vtkTriangleFilter()
tf.SetPassLines(lines)
tf.SetPassVerts(verts)
tf.SetInputData(poly)
tf.Update()
prop = vtk.vtkProperty()
prop.DeepCopy(actor.GetProperty())
tfa = Actor(tf.GetOutput())
tfa.SetProperty(prop)
return tfa
def add_marker(coord, ren, color, radius, opacity=1.):
ball_ref = vtk.vtkSphereSource()
ball_ref.SetRadius(radius)
ball_ref.SetCenter(coord)
mapper = vtk.vtkPolyDataMapper()
mapper.SetInputConnection(ball_ref.GetOutputPort())
prop = vtk.vtkProperty()
prop.SetColor(color)
prop.SetOpacity(opacity)
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.SetProperty(prop)
ren.AddActor(actor)
return actor
def cone_gen():
vtk_property = vtk.vtkProperty()
vtk_property.SetColor(0.0, .3, 1.0)
vtk_property.SetDiffuse(0.7)
vtk_property.SetSpecular(0.4)
vtk_property.SetSpecularPower(20)
cone = vtk.vtkConeSource()
mapper = vtk.vtkPolyDataMapper()
actor = vtk.vtkActor()
cone.SetResolution(60)
cone.SetRadius(12.0)
cone.SetHeight(36.0)
mapper.SetInputConnection(cone.GetOutputPort())
actor.SetMapper(mapper)
actor.SetProperty(vtk_property)
return cone, actor
def render_pvtu(file_prefix, img_prefix, step, imgCount, window=[400, 400]):
filename = file_prefix + '_' + str(step) + '.pvtu'
pvtuReader = vtkio.ReadPVTUFile(filename)
pvtuReader.GetOutput().GetPointData().SetActiveAttribute("U_CHI", 0)
colors = vtk.vtkNamedColors()
output = pvtuReader.GetOutput()
# Create the mapper that corresponds the objects of the vtk.vtk file
# into graphics elements
mapper = vtk.vtkDataSetMapper()
mapper.SetInputData(output)
# mapper.SetScalarRange(scalar_range)
mapper.ScalarVisibilityOff()
# Create the Actor
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().EdgeVisibilityOn()
actor.GetProperty().SetLineWidth(2.0)
actor.GetProperty().SetColor(colors.GetColor3d("MistyRose"))
backface = vtk.vtkProperty()
backface.SetColor(colors.GetColor3d('Tomato'))
actor.SetBackfaceProperty(backface)
# Create the Renderer
renderer = vtk.vtkRenderer()
renderer.AddActor(actor)
renderer.SetBackground(colors.GetColor3d('Wheat'))
# Create the RendererWindow
renderer_window = vtk.vtkRenderWindow()
renderer_window.SetSize(640, 480)
renderer_window.AddRenderer(renderer)
renderer_window.SetWindowName('ReadUnstructuredGrid')
# Create the RendererWindowInteractor and display the vtk_file
interactor = vtk.vtkRenderWindowInteractor()
interactor.SetRenderWindow(renderer_window)
interactor.Initialize()
interactor.Start()
def clone(self):
"""Clone the UGrid object to yield an exact copy."""
ugCopy = vtk.vtkUnstructuredGrid()
ugCopy.DeepCopy(self._data)
cloned = UGrid(ugCopy)
pr = self.GetProperty()
if isinstance(pr, vtk.vtkVolumeProperty):
prv = vtk.vtkVolumeProperty()
else:
prv = vtk.vtkProperty()
prv.DeepCopy(pr)
cloned.SetProperty(prv)
#assign the same transformation to the copy
cloned.SetOrigin(self.GetOrigin())
cloned.SetScale(self.GetScale())
cloned.SetOrientation(self.GetOrientation())
cloned.SetPosition(self.GetPosition())
cloned.name = self.name
return cloned
