def run():
if not os.path.isdir(OUTPUT):
os.makedirs(OUTPUT)
if not os.path.isdir(INPUT):
die('No directory named `%s` found.' % (INPUT))
files = glob.glob('input/*.avi')
for filename in files:
base = os.path.basename(filename)
outbase = os.path.join(OUTPUT, base)
firstframe =outbase+'.first.tif'
if not os.path.exists(firstframe):
first(filename, firstframe)
contourpath =outbase+'.contours.pkl'
if not os.path.exists(contourpath):
contours(filename, contourpath)
pathspath = outbase+'.path.pkl'
if not os.path.exists(pathspath):
path(contourpath, pathspath)
circlespath = outbase + '.circ.tif'
if not os.path.exists(circlespath):
circularity(pathspath, circlespath)
motionpath = outbase+'.motion.avi'
if not os.path.exists(motionpath):
showmotion(filename,
pathspath,
motionpath)
jsonify('input', 'output')
makecsv()
def testCircle(base):
first(base, base+'.path.png')
contours(base, base+'.contour.pkl')
path(base+'.contour.pkl', base+'.path.pkl')
showmotion(base,
base+'.path.pkl',
base+'.motion.avi')
