def test_main_defaults(capsys):
sys.argv = ["script", str(filesdir / Path("workflow.wdl"))]
wa.main()
captured = capsys.readouterr().out.splitlines(True)
with (filesdir / Path("expected.md")).open("r") as expected_output:
expected = expected_output.readlines()[:-1]
assert captured == expected + [
"> Generated using WDL AID ({})\n".format(wa.__version__)
]
def test_main_template(capsys):
sys.argv = [
"script",
str(filesdir / Path("workflow.wdl")), "--template",
str(filesdir / Path("test.template"))
]
wa.main()
captured = capsys.readouterr()
with (filesdir / Path("test.template")).open("r") as expected_output:
expected = expected_output.read()
assert captured.out == expected
def test_main_output(tmpdir):
output_file = tmpdir.join("output.md")
sys.argv = [
"script",
str(filesdir / Path("workflow.wdl")), "-o", output_file.strpath
]
wa.main()
with output_file.open() as out_file:
result = out_file.readlines()
with (filesdir / Path("expected.md")).open("r") as expected_output:
expected = expected_output.readlines()[:-1]
assert result == expected + [
"> Generated using WDL AID ({})\n".format(wa.__version__)
]
def test_main_fallback(capsys):
sys.argv = [
"script",
str(filesdir / Path("workflow.wdl")), "--fallback-description", "...",
"--fallback-category", "advanced", "--fallback-description-to-object"
]
wa.main()
captured = capsys.readouterr().out.splitlines(True)
with (filesdir /
Path("expected_fallback.md")).open("r") as expected_output:
expected = expected_output.readlines()[:-1]
assert captured == expected + [
"> Generated using WDL AID ({})\n".format(wa.__version__)
]
def test_main_strict():
sys.argv = ["script", str(filesdir / Path("workflow.wdl")), "--strict"]
with pytest.raises(ValueError):
wa.main()