def delete_collection():
params = request.form
print("params:", params)
if g.user_session.logged_in:
uc_id = params['uc_id']
if len(uc_id.split(":")) > 1:
for this_uc_id in uc_id.split(":"):
uc = model.UserCollection.query.get(this_uc_id)
collection_name = uc.name
db_session.delete(uc)
db_session.commit()
else:
uc = model.UserCollection.query.get(uc_id)
# Todo: For now having the id is good enough since it's so unique
# But might want to check ownership in the future
collection_name = uc.name
db_session.delete(uc)
db_session.commit()
else:
collection_name = params['collection_name']
user_manager.AnonUser().delete_collection(collection_name)
flash("We've deleted the collection: {}.".format(collection_name), "alert-info")
return redirect(url_for('list_collections'))
def __init__(self, collection_name):
anon_user = user_manager.AnonUser()
self.key = anon_user.key
self.name = collection_name
self.id = None
self.created_timestamp = datetime.datetime.utcnow().strftime(
'%b %d %Y %I:%M%p')
self.changed_timestamp = self.created_timestamp #ZS: will be updated when changes are made
#ZS: Find id and set it if the collection doesn't already exist
if Redis.get(self.key) == "None" or Redis.get(self.key) == None:
Redis.set(
self.key, None
) #ZS: For some reason I get the error "Operation against a key holding the wrong kind of value" if I don't do this
else:
collections_list = json.loads(Redis.get(self.key))
collection_position = 0 #ZS: Position of collection in collection_list, if it exists
collection_exists = False
for i, collection in enumerate(collections_list):
if collection['name'] == self.name:
collection_position = i
collection_exists = True
self.id = collection['id']
break
if self.id == None:
self.id = str(uuid.uuid4())
def view_collection():
params = request.args
print("PARAMS in view collection:", params)
if "uc_id" in params:
uc_id = params['uc_id']
uc = model.UserCollection.query.get(uc_id)
traits = json.loads(uc.members)
else:
user_collections = json.loads(Redis.get(user_manager.AnonUser().key))
this_collection = {}
for collection in user_collections:
if collection['id'] == params['collection_id']:
this_collection = collection
break
#this_collection = user_collections[params['collection_id']]
traits = this_collection['members']
print("in view_collection traits are:", traits)
trait_obs = []
json_version = []
for atrait in traits:
name, dataset_name = atrait.split(':')
if dataset_name == "Temp":
group = name.split("_")[2]
dataset = create_dataset(dataset_name, dataset_type = "Temp", group_name = group)
trait_ob = trait.GeneralTrait(name=name, dataset=dataset)
else:
dataset = create_dataset(dataset_name)
trait_ob = trait.GeneralTrait(name=name, dataset=dataset)
trait_ob = trait.retrieve_trait_info(trait_ob, dataset, get_qtl_info=True)
trait_obs.append(trait_ob)
json_version.append(trait.jsonable(trait_ob))
if "uc_id" in params:
collection_info = dict(trait_obs=trait_obs,
uc = uc)
else:
collection_info = dict(trait_obs=trait_obs,
collection_name=this_collection['name'])
if "json" in params:
print("json_version:", json_version)
return json.dumps(json_version)
else:
return render_template("collections/view.html",
**collection_info
)
def list_collections():
params = request.args
#logger.debug("PARAMS:", params)
if g.user_session.logged_in:
user_collections = list(g.user_session.user_collections)
#logger.debug("user_collections are:", user_collections)
return render_template("collections/list.html",
params = params,
collections = user_collections,
)
else:
anon_collections = user_manager.AnonUser().get_collections()
#logger.debug("anon_collections are:", anon_collections)
return render_template("collections/list.html",
params = params,
collections = anon_collections)
def view_collection():
params = request.args
if g.user_session.logged_in and "uc_id" in params:
uc_id = params['uc_id']
uc = (collection for collection in g.user_session.user_collections if collection["id"] == uc_id).next()
traits = uc["members"]
else:
user_collections = json.loads(Redis.get(user_manager.AnonUser().key))
this_collection = {}
for collection in user_collections:
if collection['id'] == params['collection_id']:
this_collection = collection
break
traits = this_collection['members']
trait_obs = []
json_version = []
for atrait in traits:
name, dataset_name = atrait.split(':')
if dataset_name == "Temp":
group = name.split("_")[2]
dataset = create_dataset(dataset_name, dataset_type = "Temp", group_name = group)
trait_ob = trait.GeneralTrait(name=name, dataset=dataset)
else:
dataset = create_dataset(dataset_name)
trait_ob = trait.GeneralTrait(name=name, dataset=dataset)
trait_ob = trait.retrieve_trait_info(trait_ob, dataset, get_qtl_info=True)
trait_obs.append(trait_ob)
json_version.append(trait.jsonable(trait_ob))
if "uc_id" in params:
collection_info = dict(trait_obs=trait_obs,
uc = uc)
else:
collection_info = dict(trait_obs=trait_obs,
collection_name=this_collection['name'])
if "json" in params:
return json.dumps(json_version)
else:
return render_template("collections/view.html",
**collection_info
)
def collections_add():
traits=request.args['traits']
if g.user_session.logged_in:
user_collections = g.user_session.user_collections
#logger.debug("user_collections are:", user_collections)
return render_template("collections/add.html",
traits = traits,
collections = user_collections,
)
else:
anon_collections = user_manager.AnonUser().get_collections()
collection_names = []
for collection in anon_collections:
collection_names.append({'id':collection['id'], 'name':collection['name']})
return render_template("collections/add.html",
traits = traits,
collections = collection_names,
)
def create_new(collection_name):
params = request.args
unprocessed_traits = params['traits']
traits = process_traits(unprocessed_traits)
if g.user_session.logged_in:
uc = model.UserCollection()
uc.name = collection_name
print("user_session:", g.user_session.__dict__)
uc.user = g.user_session.user_id
uc.members = json.dumps(list(traits))
db_session.add(uc)
db_session.commit()
return redirect(url_for('view_collection', uc_id=uc.id))
else:
current_collections = user_manager.AnonUser().get_collections()
ac = AnonCollection(collection_name)
ac.changed_timestamp = datetime.datetime.utcnow().strftime('%b %d %Y %I:%M%p')
ac.add_traits(params)
return redirect(url_for('view_collection', collection_id=ac.id))
def delete_collection():
params = request.form
if g.user_session.logged_in:
uc_id = params['uc_id']
if len(uc_id.split(":")) > 1:
for this_uc_id in uc_id.split(":"):
collection_name = g.user_session.delete_collection(this_uc_id)
else:
collection_name = g.user_session.delete_collection(uc_id)
else:
if "collection_name" in params:
collection_name = params['collection_name']
else:
for this_collection in params['uc_id'].split(":"):
user_manager.AnonUser().delete_collection(this_collection)
if len(uc_id.split(":")) > 1:
flash("We've deleted the selected collections.", "alert-info")
else:
flash("We've deleted the collection: {}.".format(collection_name), "alert-info")
return redirect(url_for('list_collections'))
def __init__(self):
self.anon_user = user_manager.AnonUser()
self.key = "anon_collection:v5:{}".format(self.anon_user.anon_id)