import seaborn as sns
import pandas as pd
import os
except ImportError:
raise ImportError("Please verify the module is in the working directory.")
#def ogre_show(axrow, x, y, z):
# axrow[0].imshow(x, cmap=plt.cm.gray)
# axrow[1].imshow(y, cmap=plt.cm.gray)
# axrow[2].imshow(z, cmap=plt.cm.gray)
# - MAIN - #
platepath = 'B:\\Projects\\Research\\2015-05-11 AlyssaScreen1'
output_filename = '2015-05-11 AlyssaScreen1.csv'
output_filepath = os.path.join(platepath, output_filename)
w1_files = ogre.iter_plate(platepath)
w1_files_length = len(w1_files)
columns = [
"path", "file", "raw_dapi", "raw_fitc", "raw_texas", "live", "dead", "all"
]
df = pd.DataFrame(index=range(0, w1_files_length), columns=columns)
for f in w1_files:
row = w1_files.index(f)
path, name = os.path.split(f)
print "Status Update:"
print "File: {0}".format(f)
print "Item: {0}/{1}".format(row, w1_files_length)
import seaborn as sns
import pandas as pd
import os
except ImportError:
raise ImportError("Please verify the module is in the working directory.")
# def ogre_show(axrow, x, y, z):
# axrow[0].imshow(x, cmap=plt.cm.gray)
# axrow[1].imshow(y, cmap=plt.cm.gray)
# axrow[2].imshow(z, cmap=plt.cm.gray)
# - MAIN - #
platepath = "B:\\Projects\\Research\\2015-05-11 AlyssaScreen1"
output_filename = "2015-05-11 AlyssaScreen1.csv"
output_filepath = os.path.join(platepath, output_filename)
w1_files = ogre.iter_plate(platepath)
w1_files_length = len(w1_files)
columns = ["path", "file", "raw_dapi", "raw_fitc", "raw_texas", "live", "dead", "all"]
df = pd.DataFrame(index=range(0, w1_files_length), columns=columns)
for f in w1_files:
row = w1_files.index(f)
path, name = os.path.split(f)
print "Status Update:"
print "File: {0}".format(f)
print "Item: {0}/{1}".format(row, w1_files_length)
img = ogre.site_to_array(f)
