class CentralWidget(QSplitter):
def __init__(self, parent):
QSplitter.__init__(self, Qt.Horizontal, parent)
w = QWidget(self)
w.setMinimumSize(64, 64)
w.setLayout(BoxLayout(self))
self.glWidget = GLWidget(self)
self.glWidget.centroids = (1, 2, 3), (-1, -2, -3)
self.addWidget(self.glWidget)
self.addWidget(w)
self.setStretchFactor(0, 1)
self.setStretchFactor(1, 1)
dx, dy, dz = map(lambda x, y: x - y, *self.glWidget.centroids)
print dx, dy, dz
w.layout().setValues(dx, dy, dz) # wonky
w.layout().valueChanged.connect(self.valueChangedEvent)
def valueChangedEvent(self, tup):
c1 = tuple([n / 2 for n in list(tup)])
c2 = tuple([-n / 2 for n in list(tup)])
self.glWidget.centroids = c1, c2
self.glWidget.updateGL()
def keyPressEvent(self, e):
if e.key() == Qt.Key_Escape:
QApplication.quit()
def __init__( self, parent = None ):
self.workThread = None
QtGui.QMainWindow.__init__( self, parent )
self.setWindowTitle( 'Crowd Analysis' )
mainFrame = QtGui.QFrame( self )
mainFrame.setFrameShadow( QtGui.QFrame.Plain )
mainFrame.setFrameShape( QtGui.QFrame.NoFrame )
mainVLayout = QtGui.QHBoxLayout( mainFrame )
mainVLayout.setSpacing( 3 )
mainVLayout.setMargin( 0 )
# Feedback panel
splitter = QtGui.QSplitter( mainFrame )
splitter.setOrientation( QtCore.Qt.Vertical )
# GL Window
wFrame = QtGui.QFrame(splitter)
wLayout = QtGui.QGridLayout( wFrame )
wLayout.setColumnStretch( 0, 0 )
wLayout.setColumnStretch( 1, 1 )
wLayout.setColumnStretch( 2, 0 )
self.glWindow = GLWidget( (10,10),(0,0), (10,10),(0,0), (1,1) )
self.glWindow.setMinimumSize( QtCore.QSize( 640, 480 ) )
wLayout.addWidget( self.glWindow, 0, 0, 1, 3 )
self.playerWidget = PlayerController( self.glWindow )
self.playerWidget.need3DUpdate.connect( self.glWindow.updateGL )
wLayout.addWidget( self.playerWidget, 1, 0, 1, 3 )
wLayout.setRowStretch( 0, 1 )
wLayout.setRowStretch( 1, 0 )
# Console
self.console = Logger( splitter )
QtCore.QObject.connect( self.console, QtCore.SIGNAL('cursorPositionChanged ()'), self.logExtended )
# set up the shared resource
self.rsrc = SystemResource()
self.rsrc.glWindow = self.glWindow
self.rsrc.logger = self.console
sys.stdout = ConsoleFile()
sys.stdout.processMessage.connect( self.console.info )
# Main configuration panel
self.f = QtGui.QFrame()
vLayout = QtGui.QVBoxLayout()
vLayout.setMargin( 0 )
self.analysisBox = AnlaysisWidget( self.rsrc, self )
QtCore.QObject.connect( self.analysisBox, QtCore.SIGNAL('scbLoaded(PyQt_PyObject)'), self.scbLoaded )
vLayout.addWidget( self.analysisBox )
vLayout.addStretch( 1 )
self.f.setLayout( vLayout )
mainVLayout.addWidget( self.f, 0 )
mainVLayout.addWidget( splitter, 1 )
self.setCentralWidget( mainFrame )
self.createActions()
self.createMenus()
self.createStatusBar()
def __init__(self, parent):
QSplitter.__init__(self, Qt.Horizontal, parent)
w = QWidget(self)
w.setMinimumSize(64, 64)
w.setLayout(BoxLayout(self))
self.glWidget = GLWidget(self)
self.glWidget.centroids = (1, 2, 3), (-1, -2, -3)
self.addWidget(self.glWidget)
self.addWidget(w)
self.setStretchFactor(0, 1)
self.setStretchFactor(1, 1)
dx, dy, dz = map(lambda x, y: x - y, *self.glWidget.centroids)
print dx, dy, dz
w.layout().setValues(dx, dy, dz) # wonky
w.layout().valueChanged.connect(self.valueChangedEvent)
def __init__(self):
super(MainWindow, self).__init__()
centralWidget = QtGui.QWidget()
self.setCentralWidget(centralWidget)
self.glWidget = GLWidget()
self.glWidgetArea = QtGui.QScrollArea()
self.glWidgetArea.setWidget(self.glWidget)
self.glWidgetArea.setWidgetResizable(True)
self.glWidgetArea.setHorizontalScrollBarPolicy(QtCore.Qt.ScrollBarAlwaysOff)
self.glWidgetArea.setVerticalScrollBarPolicy(QtCore.Qt.ScrollBarAlwaysOff)
self.glWidgetArea.setSizePolicy(QtGui.QSizePolicy.Ignored,
QtGui.QSizePolicy.Ignored)
self.glWidgetArea.setMinimumSize(50,50)
self.createActions()
self.createMenus()
centralLayout = QtGui.QGridLayout()
centralLayout.addWidget(self.glWidgetArea, 0, 0)
centralWidget.setLayout(centralLayout)
self.setWindowTitle("3D Brain Network Analysis Tool")
self.resize(800, 600)
self.renderSystem = RenderSystem()
self.sourceManager = SourceManager()
self.sceneManager = SceneManager()
self.renderSystem.setRenderWidget(self.glWidget)
self.renderSystem.setSceneManager(self.sceneManager)
self.sceneManager.addSource(self.sourceManager)
self.glWidget.addRenderSystem(self.renderSystem)
def __init__(self, parent): QSplitter.__init__(self, Qt.Horizontal, parent) w= QWidget(self) ; w.setMinimumSize(64,64) ; w.setLayout(BoxLayout(self)) self.glWidget= GLWidget(self) ; self.glWidget.centroids = (1,2,3),(-1,-2,-3) self.addWidget( self.glWidget ) self.addWidget( w ) self.setStretchFactor(0,1) self.setStretchFactor(1,1) dx,dy,dz=map(lambda x,y:x-y, *self.glWidget.centroids) print dx,dy,dz w.layout().setValues(dx,dy,dz) # wonky w.layout().valueChanged.connect(self.valueChangedEvent)
def __init__(self):
super(MainWindow, self).__init__()
centralWidget = QtGui.QWidget()
self.setCentralWidget(centralWidget)
self.glWidget = GLWidget()
self.glWidgetArea = QtGui.QScrollArea()
self.glWidgetArea.setWidget(self.glWidget)
self.glWidgetArea.setWidgetResizable(True)
self.glWidgetArea.setHorizontalScrollBarPolicy(
QtCore.Qt.ScrollBarAlwaysOff)
self.glWidgetArea.setVerticalScrollBarPolicy(
QtCore.Qt.ScrollBarAlwaysOff)
self.glWidgetArea.setSizePolicy(QtGui.QSizePolicy.Ignored,
QtGui.QSizePolicy.Ignored)
self.glWidgetArea.setMinimumSize(50, 50)
self.createActions()
self.createMenus()
centralLayout = QtGui.QGridLayout()
centralLayout.addWidget(self.glWidgetArea, 0, 0)
centralWidget.setLayout(centralLayout)
self.setWindowTitle("3D Brain Network Analysis Tool")
self.resize(800, 600)
self.renderSystem = RenderSystem()
self.sourceManager = SourceManager()
self.sceneManager = SceneManager()
self.renderSystem.setRenderWidget(self.glWidget)
self.renderSystem.setSceneManager(self.sceneManager)
self.sceneManager.addSource(self.sourceManager)
self.glWidget.addRenderSystem(self.renderSystem)
class CentralWidget(QSplitter): def __init__(self, parent): QSplitter.__init__(self, Qt.Horizontal, parent) w= QWidget(self) ; w.setMinimumSize(64,64) ; w.setLayout(BoxLayout(self)) self.glWidget= GLWidget(self) ; self.glWidget.centroids = (1,2,3),(-1,-2,-3) self.addWidget( self.glWidget ) self.addWidget( w ) self.setStretchFactor(0,1) self.setStretchFactor(1,1) dx,dy,dz=map(lambda x,y:x-y, *self.glWidget.centroids) print dx,dy,dz w.layout().setValues(dx,dy,dz) # wonky w.layout().valueChanged.connect(self.valueChangedEvent) def valueChangedEvent(self, tup ): c1= tuple([ n/2 for n in list(tup)]) c2= tuple([-n/2 for n in list(tup)]) self.glWidget.centroids = c1,c2 self.glWidget.updateGL() def keyPressEvent(self, e): if e.key() == Qt.Key_Escape: QApplication.quit()
def __init__(self):
'''
Only initialize critical components(like opengl) here, use start() for anything else
'''
QMainWindow.__init__(self)
Globals.glwidget = GLWidget(self)
self.setCentralWidget(Globals.glwidget)
Globals.glwidget.makeCurrent()
if Globals.musicOn:
print "Using music"
Globals.mediaobject = Phonon.MediaObject(self)
self.audioOutput = Phonon.AudioOutput(Phonon.MusicCategory, self)
Phonon.createPath(Globals.mediaobject, self.audioOutput)
self.map = Map() #map class
self.drawTimer = QTimer()
self.drawTimer.timeout.connect(self.drawTimerTimeout)
self.drawTimer.start(0.2)
class MainWindow(QtGui.QMainWindow):
def __init__(self):
super(MainWindow, self).__init__()
centralWidget = QtGui.QWidget()
self.setCentralWidget(centralWidget)
self.glWidget = GLWidget()
self.glWidgetArea = QtGui.QScrollArea()
self.glWidgetArea.setWidget(self.glWidget)
self.glWidgetArea.setWidgetResizable(True)
self.glWidgetArea.setHorizontalScrollBarPolicy(
QtCore.Qt.ScrollBarAlwaysOff)
self.glWidgetArea.setVerticalScrollBarPolicy(
QtCore.Qt.ScrollBarAlwaysOff)
self.glWidgetArea.setSizePolicy(QtGui.QSizePolicy.Ignored,
QtGui.QSizePolicy.Ignored)
self.glWidgetArea.setMinimumSize(50, 50)
self.createActions()
self.createMenus()
centralLayout = QtGui.QGridLayout()
centralLayout.addWidget(self.glWidgetArea, 0, 0)
centralWidget.setLayout(centralLayout)
self.setWindowTitle("3D Brain Network Analysis Tool")
self.resize(800, 600)
self.renderSystem = RenderSystem()
self.sourceManager = SourceManager()
self.sceneManager = SceneManager()
self.renderSystem.setRenderWidget(self.glWidget)
self.renderSystem.setSceneManager(self.sceneManager)
self.sceneManager.addSource(self.sourceManager)
self.glWidget.addRenderSystem(self.renderSystem)
def loadFile(self):
fileName = QtGui.QFileDialog.getOpenFileName(self, 'Open file', './',
'Surface Template(*.nv)')
self.surface = Surface()
self.surface.LoadIn(fileName)
self.sceneManager.rootNode.localObjectDict['Surface'] = self.surface
def about(self):
QtGui.QMessageBox.about(
self, "About 3D Brain Network Analysis Tool",
"The <b>3D Brain Network Analysis Tool</b> is developed by Gushu Li, "
"from NICS Lab in E.E. Dept at Tsinghua University. "
"If you find any problem, "
"please email me at <b>[email protected]</b>.")
def grabFrameBuffer(self):
image = self.glWidget.grabFrameBuffer()
pixmap = QtGui.QPixmap.fromImage(image)
filename = QtGui.QFileDialog.getSaveFileName(self, 'Save file', './',
'Image Files (*.png)')
pixmap.save(filename)
def createActions(self):
self.loadAct = QtGui.QAction('Load',
self,
shortcut='Ctrl+L',
triggered=self.loadFile)
self.exitAct = QtGui.QAction('Exit',
self,
shortcut='Ctrl+Q',
triggered=self.close)
self.grabFrameBufferAct = QtGui.QAction('&Grab Frame Buffer',
self,
shortcut='Ctrl+G',
triggered=self.grabFrameBuffer)
self.aboutAct = QtGui.QAction("&About", self, triggered=self.about)
self.aboutQtAct = QtGui.QAction("About &Qt",
self,
triggered=QtGui.qApp.aboutQt)
def createMenus(self):
self.fileMenu = self.menuBar().addMenu('&File')
self.fileMenu.addAction(self.loadAct)
self.fileMenu.addSeparator()
self.fileMenu.addAction(self.exitAct)
self.editMenu = self.menuBar().addMenu('&Edit')
self.editMenu.addAction(self.grabFrameBufferAct)
self.helpMenu = self.menuBar().addMenu("&Help")
self.helpMenu.addAction(self.aboutAct)
self.helpMenu.addSeparator()
self.helpMenu.addAction(self.aboutQtAct)
class MainWindow(QtGui.QMainWindow):
def __init__(self):
super(MainWindow, self).__init__()
centralWidget = QtGui.QWidget()
self.setCentralWidget(centralWidget)
self.glWidget = GLWidget()
self.glWidgetArea = QtGui.QScrollArea()
self.glWidgetArea.setWidget(self.glWidget)
self.glWidgetArea.setWidgetResizable(True)
self.glWidgetArea.setHorizontalScrollBarPolicy(QtCore.Qt.ScrollBarAlwaysOff)
self.glWidgetArea.setVerticalScrollBarPolicy(QtCore.Qt.ScrollBarAlwaysOff)
self.glWidgetArea.setSizePolicy(QtGui.QSizePolicy.Ignored,
QtGui.QSizePolicy.Ignored)
self.glWidgetArea.setMinimumSize(50,50)
self.createActions()
self.createMenus()
centralLayout = QtGui.QGridLayout()
centralLayout.addWidget(self.glWidgetArea, 0, 0)
centralWidget.setLayout(centralLayout)
self.setWindowTitle("3D Brain Network Analysis Tool")
self.resize(800, 600)
self.renderSystem = RenderSystem()
self.sourceManager = SourceManager()
self.sceneManager = SceneManager()
self.renderSystem.setRenderWidget(self.glWidget)
self.renderSystem.setSceneManager(self.sceneManager)
self.sceneManager.addSource(self.sourceManager)
self.glWidget.addRenderSystem(self.renderSystem)
def loadFile(self):
fileName = QtGui.QFileDialog.getOpenFileName(self,'Open file','./',
'Surface Template(*.nv)')
self.surface = Surface()
self.surface.LoadIn(fileName)
self.sceneManager.rootNode.localObjectDict['Surface'] = self.surface
def about(self):
QtGui.QMessageBox.about(self, "About 3D Brain Network Analysis Tool",
"The <b>3D Brain Network Analysis Tool</b> is developed by Gushu Li, "
"from NICS Lab in E.E. Dept at Tsinghua University. "
"If you find any problem, "
"please email me at <b>[email protected]</b>.")
def grabFrameBuffer(self):
image = self.glWidget.grabFrameBuffer()
pixmap = QtGui.QPixmap.fromImage(image)
filename = QtGui.QFileDialog.getSaveFileName(self,'Save file','./',
'Image Files (*.png)')
pixmap.save(filename)
def createActions(self):
self.loadAct = QtGui.QAction('Load', self, shortcut = 'Ctrl+L',
triggered = self.loadFile)
self.exitAct = QtGui.QAction('Exit', self, shortcut = 'Ctrl+Q',
triggered = self.close)
self.grabFrameBufferAct = QtGui.QAction('&Grab Frame Buffer', self,
shortcut = 'Ctrl+G', triggered = self.grabFrameBuffer)
self.aboutAct = QtGui.QAction("&About", self, triggered=self.about)
self.aboutQtAct = QtGui.QAction("About &Qt", self,
triggered=QtGui.qApp.aboutQt)
def createMenus(self):
self.fileMenu = self.menuBar().addMenu('&File')
self.fileMenu.addAction(self.loadAct)
self.fileMenu.addSeparator()
self.fileMenu.addAction(self.exitAct)
self.editMenu = self.menuBar().addMenu('&Edit')
self.editMenu.addAction(self.grabFrameBufferAct)
self.helpMenu = self.menuBar().addMenu("&Help")
self.helpMenu.addAction(self.aboutAct)
self.helpMenu.addSeparator()
self.helpMenu.addAction(self.aboutQtAct)
def __init__(self):
QDialog.__init__(self, None)
uic.loadUi(path, self)
'''
## volume_controller _ 01 ##
'''
self.volume_cntr = Volume_controller(
model_path='../Diagnosis_Network/model/Grad_cam_10')
self.Similar_Explanations = Similar_Document(Top)
self.image = QtGui.QImage()
self.file_name = ""
### Event Handler
self.Load_MR_Image.clicked.connect(self.open_image_fd)
# Analyze_btn even
#self.MR_Analyze_btn.clicked.connect(self.Visual_Explanation)
#self.MR_Analyze_btn.clicked.connect(self.Report)
#self.MR_Analyze_btn.clicked.connect(self.Explanation)
#self.MR_Analyze_btn.clicked.connect(self.show_prediction)
#self.MR_Analyze_btn.clicked.connect(self.show_details)
self.MR_Analyze_btn.clicked.connect(self.Diagnosis_disease)
# Slider event
self.Axial_slider.sliderMoved['int'].connect(self.Axial_slider_change)
self.Coronal_slider.sliderMoved['int'].connect(
self.Coronal_slider_change)
self.Sagittal_slider.sliderMoved['int'].connect(
self.Sagittal_slider_change)
self.Topiclist.doubleClicked.connect(self.showContent)
# i think we need more implement here
# openGL
self.openGLWidget = GLWidget(self.groupBox_2)
self.openGLWidget.setGeometry(QtCore.QRect(20, 50, 370, 370))
self.openGLWidget.setObjectName("openGLWidget")
# QtWidget label
#self.opengl_title = QtWidgets.QLabel(self.groupBox_2)
#self.opengl_title.setGeometry(QtCore.QRect(0, 30, 81, 21))
self.opengl_title.raise_()
self.paper_to_journal = {
"High b-value diffusion imaging of dementia_3A application to vascular dementia and Alzheimer disease":
"neurological sciences (2007)",
"Novel MRI techniques in the assessment of dementia":
"nuclear medicine and molecular imaging(2008)",
"Oxidative modification and down-regulation of Pin1 in Alzheimer's disease hippocampus_3A a redox proteomics analysis":
"Neurobiology of aging (2006)",
"Ways toward an early diagnosis in Alzheimer's disease_3A the Alzheimer's Disease Neuroimaging Initiative (ADNI)":
"Alzheimer's & Dementia (2005)",
"Novel MRI techniques in the assessment of dementia":
"neurological sciences (2007)",
"Amyloid precursor protein processing and A42 deposition in atransgenic mouse model of Alzheimer disease":
"National Academy of Sciences(1997)",
"Oxidative modification and down - regulation of Pin1 in Alzheimer's disease hippocampus_3A a redox proteomics analysis":
"Neurobiology of aging(2006)",
"New insights into brain BDNF function in normal aging and Alzheimer disease":
"Brain research reviews (2008)",
"The developmental role of serotonin_3A news from mouse molecular genetics":
"Nature Reviews Neuroscience (2003)",
"Chronic divalproex sodium use and brain atrophy in Alzheimer disease":
"Neurology (2011)",
'Amyloid precursor protein processing and A42 deposition in a transgenic mouse model of Alzheimer disease':
"National Academy of Sciences (1997)",
'Oxidative modification and down-regulation of Pin1 in Alzheimer_s disease hippocampus_3A a redox proteomics analysis':
'Neurobiology (2006)'
}
self.paper_to_author = {
"High b-value diffusion imaging of dementia_3A application to vascular dementia and Alzheimer disease":
"Mayzel-Oreg, Orna, et al.",
"Novel MRI techniques in the assessment of dementia":
"Teipel, Stefan J., et al.",
"Oxidative modification and down-regulation of Pin1 in Alzheimer's disease hippocampus_3A a redox proteomics analysis":
"Sultana, Rukhsana, et al.",
"Ways toward an early diagnosis in Alzheimer's disease_3A the Alzheimer's Disease Neuroimaging Initiative (ADNI)":
"Mueller, Susanne G., et al.",
"Novel MRI techniques in the assessment of dementia":
"Teipel, Stefan J., et al.",
"Amyloid precursor protein processing and A42 deposition in atransgenic mouse model of Alzheimer disease":
"Johnson - Wood, K., et al.",
"Oxidative modification and down - regulation of Pin1 in Alzheimer's disease hippocampus_3A a redox proteomics analysis":
"Sultana, Rukhsana, et al.",
"New insights into brain BDNF function in normal aging and Alzheimer disease":
"Tapia-Arancibia, Lucia, et al.",
"The developmental role of serotonin_3A news from mouse molecular genetics":
"Gaspar, Patricia, Olivier Cases, and Luc Maroteaux.",
"Chronic divalproex sodium use and brain atrophy in Alzheimer disease":
"Fleisher, A.S., et al.",
'Amyloid precursor protein processing and A42 deposition in a transgenic mouse model of Alzheimer disease':
"Johnson-Wood, K., et al.",
'Oxidative modification and down-regulation of Pin1 in Alzheimer_s disease hippocampus_3A a redox proteomics analysis':
'Sultana, Rukhsana, et al.'
}
'''
font = QtGui.QFont()
font.setPointSize(20)
font.setItalic(True)
self.opengl_title.setFont(font)
#self.opengl_title.setAutoFillBackground(False)
self.opengl_title.setStyleSheet("background-color: rgb(0, 0, 0);\n"
"color: rgb(255, 255, 255);")
#self.opengl_title.
'''
self.flag = 0
if self.flag == 1:
print("test")
self.topics = []
self.contents = []
self.pairs = []
self.ad_hippocampus = 0
self.nc_hippocampus = 0
self.ad_ventricle = 0
self.nc_ventricle = 0
self.ad_amygdala = 0
self.nc_amygdala = 0
self.ad_thalamus = 0
self.nc_thalamus = 0
self.ad_putamen = 0
self.nc_putamen = 0
self.ad_wholebrain = 0
self.nc_wholebrain = 0
class GUI_main(QDialog):
def __init__(self):
QDialog.__init__(self, None)
uic.loadUi(path, self)
'''
## volume_controller _ 01 ##
'''
self.volume_cntr = Volume_controller(
model_path='../Diagnosis_Network/model/Grad_cam_10')
self.Similar_Explanations = Similar_Document(Top)
self.image = QtGui.QImage()
self.file_name = ""
### Event Handler
self.Load_MR_Image.clicked.connect(self.open_image_fd)
# Analyze_btn even
#self.MR_Analyze_btn.clicked.connect(self.Visual_Explanation)
#self.MR_Analyze_btn.clicked.connect(self.Report)
#self.MR_Analyze_btn.clicked.connect(self.Explanation)
#self.MR_Analyze_btn.clicked.connect(self.show_prediction)
#self.MR_Analyze_btn.clicked.connect(self.show_details)
self.MR_Analyze_btn.clicked.connect(self.Diagnosis_disease)
# Slider event
self.Axial_slider.sliderMoved['int'].connect(self.Axial_slider_change)
self.Coronal_slider.sliderMoved['int'].connect(
self.Coronal_slider_change)
self.Sagittal_slider.sliderMoved['int'].connect(
self.Sagittal_slider_change)
self.Topiclist.doubleClicked.connect(self.showContent)
# i think we need more implement here
# openGL
self.openGLWidget = GLWidget(self.groupBox_2)
self.openGLWidget.setGeometry(QtCore.QRect(20, 50, 370, 370))
self.openGLWidget.setObjectName("openGLWidget")
# QtWidget label
#self.opengl_title = QtWidgets.QLabel(self.groupBox_2)
#self.opengl_title.setGeometry(QtCore.QRect(0, 30, 81, 21))
self.opengl_title.raise_()
self.paper_to_journal = {
"High b-value diffusion imaging of dementia_3A application to vascular dementia and Alzheimer disease":
"neurological sciences (2007)",
"Novel MRI techniques in the assessment of dementia":
"nuclear medicine and molecular imaging(2008)",
"Oxidative modification and down-regulation of Pin1 in Alzheimer's disease hippocampus_3A a redox proteomics analysis":
"Neurobiology of aging (2006)",
"Ways toward an early diagnosis in Alzheimer's disease_3A the Alzheimer's Disease Neuroimaging Initiative (ADNI)":
"Alzheimer's & Dementia (2005)",
"Novel MRI techniques in the assessment of dementia":
"neurological sciences (2007)",
"Amyloid precursor protein processing and A42 deposition in atransgenic mouse model of Alzheimer disease":
"National Academy of Sciences(1997)",
"Oxidative modification and down - regulation of Pin1 in Alzheimer's disease hippocampus_3A a redox proteomics analysis":
"Neurobiology of aging(2006)",
"New insights into brain BDNF function in normal aging and Alzheimer disease":
"Brain research reviews (2008)",
"The developmental role of serotonin_3A news from mouse molecular genetics":
"Nature Reviews Neuroscience (2003)",
"Chronic divalproex sodium use and brain atrophy in Alzheimer disease":
"Neurology (2011)",
'Amyloid precursor protein processing and A42 deposition in a transgenic mouse model of Alzheimer disease':
"National Academy of Sciences (1997)",
'Oxidative modification and down-regulation of Pin1 in Alzheimer_s disease hippocampus_3A a redox proteomics analysis':
'Neurobiology (2006)'
}
self.paper_to_author = {
"High b-value diffusion imaging of dementia_3A application to vascular dementia and Alzheimer disease":
"Mayzel-Oreg, Orna, et al.",
"Novel MRI techniques in the assessment of dementia":
"Teipel, Stefan J., et al.",
"Oxidative modification and down-regulation of Pin1 in Alzheimer's disease hippocampus_3A a redox proteomics analysis":
"Sultana, Rukhsana, et al.",
"Ways toward an early diagnosis in Alzheimer's disease_3A the Alzheimer's Disease Neuroimaging Initiative (ADNI)":
"Mueller, Susanne G., et al.",
"Novel MRI techniques in the assessment of dementia":
"Teipel, Stefan J., et al.",
"Amyloid precursor protein processing and A42 deposition in atransgenic mouse model of Alzheimer disease":
"Johnson - Wood, K., et al.",
"Oxidative modification and down - regulation of Pin1 in Alzheimer's disease hippocampus_3A a redox proteomics analysis":
"Sultana, Rukhsana, et al.",
"New insights into brain BDNF function in normal aging and Alzheimer disease":
"Tapia-Arancibia, Lucia, et al.",
"The developmental role of serotonin_3A news from mouse molecular genetics":
"Gaspar, Patricia, Olivier Cases, and Luc Maroteaux.",
"Chronic divalproex sodium use and brain atrophy in Alzheimer disease":
"Fleisher, A.S., et al.",
'Amyloid precursor protein processing and A42 deposition in a transgenic mouse model of Alzheimer disease':
"Johnson-Wood, K., et al.",
'Oxidative modification and down-regulation of Pin1 in Alzheimer_s disease hippocampus_3A a redox proteomics analysis':
'Sultana, Rukhsana, et al.'
}
'''
font = QtGui.QFont()
font.setPointSize(20)
font.setItalic(True)
self.opengl_title.setFont(font)
#self.opengl_title.setAutoFillBackground(False)
self.opengl_title.setStyleSheet("background-color: rgb(0, 0, 0);\n"
"color: rgb(255, 255, 255);")
#self.opengl_title.
'''
self.flag = 0
if self.flag == 1:
print("test")
self.topics = []
self.contents = []
self.pairs = []
self.ad_hippocampus = 0
self.nc_hippocampus = 0
self.ad_ventricle = 0
self.nc_ventricle = 0
self.ad_amygdala = 0
self.nc_amygdala = 0
self.ad_thalamus = 0
self.nc_thalamus = 0
self.ad_putamen = 0
self.nc_putamen = 0
self.ad_wholebrain = 0
self.nc_wholebrain = 0
def Refresh(self):
cur_value = self.Axial_slider.value()
axial_image = self.volume_cntr.get_axial_image(cur_value)
# h, w, c = np.shape(axial_image)
self.openGLWidget.move_axial(volume_info=axial_image, index=cur_value)
cur_value = self.Coronal_slider.value()
coronal_image = self.volume_cntr.get_coronal_image(cur_value)
# h, w, c = np.shape(coronal_image)
self.openGLWidget.move_coronal(volume_info=coronal_image,
index=cur_value)
cur_value = self.Sagittal_slider.value()
sagittal_image = self.volume_cntr.get_sagittal_image(cur_value)
# h, w, c = np.shape(coronal_image)
self.openGLWidget.move_sagittal(volume_info=sagittal_image,
index=cur_value)
def Axial_slider_change(self):
cur_value = self.Axial_slider.value()
axial_size = self.volume_cntr.get_axial_size()
#axial_index = self.volume_cntr.get_axial_index()
axial_indexer_text = '{0:03}:{1:03}'.format(cur_value, axial_size)
self.Axial_indexer.setText(axial_indexer_text)
axial_image = self.volume_cntr.get_axial_image(cur_value)
h, w, c = np.shape(axial_image)
qimage = QImage(axial_image, w, h, 3 * w, QImage.Format_RGB888)
self.Axial_viewer.setPixmap(QPixmap(qimage))
self.openGLWidget.move_axial(volume_info=axial_image, index=cur_value)
def Coronal_slider_change(self):
cur_value = self.Coronal_slider.value()
coronal_size = self.volume_cntr.get_coronal_size()
#coronal_index = self.volume_cntr.get_coronal_index()
coronal_indexer_text = '{0:03}:{1:03}'.format(cur_value, coronal_size)
self.Coronal_indexer.setText(coronal_indexer_text)
coronal_image = self.volume_cntr.get_coronal_image(
abs(coronal_size - cur_value - 1))
h, w, c = np.shape(coronal_image)
qimage = QImage(coronal_image, w, h, 3 * w, QImage.Format_RGB888)
self.Coronal_viewer.setPixmap(QPixmap(qimage))
self.openGLWidget.move_coronal(volume_info=coronal_image,
index=abs(coronal_size - cur_value - 1))
def Sagittal_slider_change(self):
cur_value = self.Sagittal_slider.value()
sagittal_size = self.volume_cntr.get_sagittal_size()
#sagittal_index = self.volume_cntr.get_axial_index()
sagittal_indexer_text = '{0:03}:{1:03}'.format(cur_value,
sagittal_size)
self.Sagittal_indexer.setText(sagittal_indexer_text)
sagittal_image = self.volume_cntr.get_sagittal_image(cur_value)
h, w, c = np.shape(sagittal_image)
sagittal_image_reshape = np.reshape(sagittal_image, (w, h, c))
qimage = QImage(sagittal_image_reshape, w, h, 3 * w,
QImage.Format_RGB888)
self.Sagittal_viewer.setPixmap(QPixmap(qimage))
self.openGLWidget.move_sagittal(volume_info=sagittal_image,
index=cur_value)
def on_red(self):
pixmap = QPixmap('./red1.png')
self.onoff.setPixmap(pixmap)
def itemActivated_event(item):
print(item.text())
# mri 영상 분석하기 click event
###################################################################################################
# #
# Diagnosis #
# #
###################################################################################################
def Set_contextBox(self, editText, content):
html_head = "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n" \
"<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n" \
"p, li { white-space: pre-wrap; }\n" \
"</style></head><body style=\" font-family:\'Ubuntu\'; font-size:11pt; font-weight:400; font-style:normal;\">\n" \
"<p style=\" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\">"
html_tail = "</body></html>"
sentence = html_head
sentence += content
sentence += html_tail
_translate = QtCore.QCoreApplication.translate
editText.setHtml(_translate("MainWindow", sentence))
editText.setFont(QtGui.QFont('SansSerif', 13))
editText.setAlignment(Qt.AlignCenter) # 가운데 정렬
editText.setAlignment(Qt.AlignVCenter) # 가운데 정렬
def Diagnosis_disease(self):
if self.volume_cntr.Isvolume():
QApplication.setOverrideCursor(Qt.WaitCursor)
pixmap = QPixmap('./red1.png')
self.onoff.setPixmap(pixmap)
# i don't know what is the menaing of this line
# check later 2019/8/26 [mon]
#sec = 3.0
#time.sleep(sec)
# Diagnosis
'''
## volume_controller _ 02 ##
'''
Dtected_damaged_area = self.volume_cntr.get_diagnosis(
Threshold=0.9)
print(Dtected_damaged_area)
# Refresh_opengl
self.Refresh()
# View heatmap image
axial_image = self.volume_cntr.get_axial_image(
self.volume_cntr.axial_index)
h, w, c = np.shape(axial_image)
qimage = QImage(axial_image, w, h, 3 * w, QImage.Format_RGB888)
self.Axial_viewer.setPixmap(QPixmap(qimage))
coronal_image = self.volume_cntr.get_coronal_image(
self.volume_cntr.coronal_index)
h, w, c = np.shape(coronal_image)
qimage = QImage(coronal_image, w, h, 3 * w, QImage.Format_RGB888)
self.Coronal_viewer.setPixmap(QPixmap(qimage))
sagittal_image = self.volume_cntr.get_sagittal_image(
self.volume_cntr.sagittal_index)
h, w, c = np.shape(sagittal_image)
sagittal_image = np.reshape(sagittal_image, (w, h, c))
qimage = QImage(sagittal_image, w, h, 3 * w, QImage.Format_RGB888)
self.Sagittal_viewer.setPixmap(QPixmap(qimage))
#self.openGLWidget.load()
# Show diagnosis
# Prediction
predicted_value = self.volume_cntr.get_prediction()
print(predicted_value)
val = math.trunc(predicted_value[0][0] * 100)
val2 = 100 - val #predicted_value[0][1] * 100
print(val, val2)
#------------------------------------------------------------------------------------------------------------------#
## Show Reports
## Patient's
volume_map = self.volume_cntr.get_volume_map()
hippocampus_vol = volume_map[27][2] + volume_map[13][2]
ventricle_volume = volume_map[10][2] + volume_map[11][
2] + volume_map[20][2] + volume_map[3][2]
amygdal_volume = volume_map[14][2] + volume_map[28][2]
thalamus_volume = volume_map[6][2] + volume_map[23][2]
putamen_volume = volume_map[8][2] + volume_map[25][2]
sum = 0.0
for dat in volume_map:
sum += dat[2]
whole_brain = sum - volume_map[0][2]
#------------------------------------------------------------------------------------------------------------------#
result_ad_nc = 'AD' if val > val2 else 'NC'
self.flag = 1
# User's volume
report_s = Report(self.volume_cntr.get_volume_map(),
detected_damaged_area=Dtected_damaged_area,
result=result_ad_nc,
prob=[val, val2])
text = report_s.RuleBased()
_translate = QtCore.QCoreApplication.translate
self.Report_text.setHtml(_translate("MainWindow", text))
self.Report_text.setFont(QtGui.QFont('SansSerif', 15))
# ----------------------------------------- List Box appending ----------------------------------------- #
self.topics, self.contents = self.Similar_Explanations.Analyze(
self.file_name)
listview = self.Topiclist
model = QStandardItemModel()
for idx, topic in enumerate(self.topics):
temp = ""
cnt = 0
for w in topic:
if cnt == 31:
temp += '\n '
temp += w
cnt = 0
else:
temp += w
cnt += 1
#temp = QTextEdit(topic)
#model.appendRow(temp)
model.appendRow(
QStandardItem(str(idx + 1) + " : " + temp + '\n'))
#model.appendRow(QStandardItem(''))
listview.setModel(model)
listview.setFont(QtGui.QFont('SansSerif', 11))
listview.show()
# ------------------------------------------------------------------------------------------------------- #
# html_head = "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n" \
# "<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n" \
# "p, li { white-space: pre-wrap; }\n" \
# "</style></head><body style=\" font-family:\'Ubuntu\'; font-size:11pt; font-weight:400; font-style:normal;\">\n" \
# "<p style=\" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\">" \
#
# html_tail = "</body></html>"
#
# sentence = html_head
# sentence += "<b>제목</b><br>"
# sentence += self.topics[0].replace('\n', '') + "<br>"
# sentence += "<b>내용</b><br>"
# sentence += self.contents[0].replace('\n', '')
# sentence += "<br>"
# sentence += "<b>저자</b><br>"
# sentence += self.paper_to_author[self.topics[0].replace('\n', '')] + "<br>" # "Mayzel-Oreg, Orna, et al.<br>"
# sentence += "<b>출판지 (년도)</b><br>"
# sentence += self.paper_to_journal[self.topics[0].replace('\n', '')] # "neurological sciences (2007)"
# sentence += html_tail
#
#
# _translate = QtCore.QCoreApplication.translate
#
# self.Content_editText.setHtml(_translate("MainWindow", sentence))
# self.Content_editText.setFont(QtGui.QFont('SansSerif', 13))
# self.Content_editText.setAlignment(Qt.AlignCenter) # 가운데 정렬
# self.Content_editText.setAlignment(Qt.AlignVCenter) # 가운데 정렬
#self.Set_contextBox(self.Qtext_title,self.topics[0].replace('\n', ''))
self.Set_contextBox(
self.Qtext_author,
self.paper_to_author[self.topics[0].replace('\n', '')])
self.Set_contextBox(
self.Qtext_publish,
self.paper_to_journal[self.topics[0].replace('\n', '')])
self.Set_contextBox(self.Qtext_content,
self.contents[0].replace('\n', ''))
#self.Content_editText.setText(self.contents[0])
#self.Content_editText.setFont(QtGui.QFont('SansSerif', 17))
# ------------------------------------------------------------------------------------------------------ #
## Show detail
# self.get_details(10, 20, 30, 20, 40, 50, 40, 35, 20, 25, 18, 60)
self.get_details(6016, 7422, 62133, 41202, 2758, 2224, 13265,
12890, 8449, 7878, 1005607, 1049783)
# self.ad_details.setFont(QtGui.QFont('SansSerif', 10.5))
# self.nc_details.setFont(QtGui.QFont('SansSerif', 10.5))
# self.nc_details.setAlignment(Qt.AlignCenter) # 가운데 정렬
# self.ad_details.setAlignment(Qt.AlignCenter) # 가운데 정렬
#-------------------------------------------------------------#
# Normal person set Text
self.hippo_normal.setText(format(7422, ','))
self.vent_normal.setText(format(41202, ','))
self.amyg_normal.setText(format(2224, ','))
self.thala_normal.setText(format(12890, ','))
self.puta_normal.setText(format(7878, ','))
self.wb_normal.setText(format(1049783, ','))
# Patient person set Text
self.hippo_patient.setText(format(hippocampus_vol, ','))
self.vent_patient.setText(format(ventricle_volume, ','))
self.amyg_patient.setText(format(amygdal_volume, ','))
self.thala_patient.setText(format(thalamus_volume, ','))
self.puta_patient.setText(format(putamen_volume, ','))
self.wb_patient.setText(format(int(whole_brain), ','))
#-------------------------------------------------------------#
#
#
# self.hippo_ad.setText(str(self.ad_hippocampus))
# self.hippo_nc.setText(str(self.nc_hippocampus))
#
# self.vent_ad.setText(str(self.ad_ventricle))
# self.vent_nc.setText(str(self.nc_ventricle))
#
# self.amyg_ad.setText(str(self.ad_amygdala))
# self.amyg_nc.setText(str(self.nc_amygdala))
#
# self.thala_ad.setText(str(self.ad_thalamus))
# self.thala_nc.setText(str(self.nc_thalamus))
#
# self.puta_ad.setText(str(self.ad_putamen))
# self.puta_nc.setText(str(self.nc_putamen))
#
# self.wb_ad.setText(str(self.ad_wholebrain))
# self.wb_nc.setText(str(self.nc_wholebrain))
# self.ad_details.setAlignment(Qt.AlignCenter) # 가운데 정렬
# self.nc_details.setAlignment(Qt.AlignCenter) # 가운데 정렬
self.adlabel.setText(str(val) + "%")
self.nclabel.setText(str(val2) + "%")
self.adbar.setValue(val)
self.ncbar.setValue(val2)
QApplication.restoreOverrideCursor()
# pixmap = QPixmap('../GUI/null1.png')
# self.onoff.setPixmap(pixmap)
def Visual_Explanation(self):
if self.volume_cntr.Isvolume():
# Heatmap + damaged area
volume_map = self.volume_cntr.get_diagnosis()
axial_image = self.volume_cntr.get_axial_image(
self.volume_cntr.axial_index)
h, w, c = np.shape(axial_image)
qimage = QImage(axial_image, w, h, 3 * w, QImage.Format_RGB888)
self.Axial_viewer.setPixmap(QPixmap(qimage))
coronal_image = self.volume_cntr.get_coronal_image(
self.volume_cntr.coronal_index)
h, w, c = np.shape(coronal_image)
qimage = QImage(coronal_image, w, h, 3 * w, QImage.Format_RGB888)
self.Coronal_viewer.setPixmap(QPixmap(qimage))
sagittal_image = self.volume_cntr.get_sagittal_image(
self.volume_cntr.sagittal_index)
h, w, c = np.shape(sagittal_image)
sagittal_image = np.reshape(sagittal_image, (w, h, c))
qimage = QImage(sagittal_image, w, h, 3 * w, QImage.Format_RGB888)
self.Sagittal_viewer.setPixmap(QPixmap(qimage))
def show_prediction(self):
val = 62.3
val2 = 100.0 - val
print(val, val2)
self.adlabel.setText(str(val) + "%")
self.nclabel.setText(str(val2) + "%")
self.adbar.setValue(val)
self.ncbar.setValue(val2)
def Report(self):
self.flag = 1
report_s = Report(100.0,
50.0,
10.0,
25.0,
50.0,
60.0,
70.0,
80.0,
90.0,
10.0,
20.0,
31.0,
result='NC',
lang='kor')
self.Report_text.setText(report_s.RuleBased())
self.Report_text.setFont(QtGui.QFont('SansSerif', 11))
def Explanation(self):
self.topics, self.contents = self.Similar_Explanations.Analyze(
self.file_name)
listview = self.Topiclist
model = QStandardItemModel()
for topic in self.topics:
model.appendRow(QStandardItem(topic))
listview.setModel(model)
listview.setFont(QtGui.QFont('SansSerif', 13.5))
listview.show()
self.Content_editText.setText(self.contents[0])
# self.Content_editText.setFont(QtGui.QFont('SansSerif', 10))
# self.Content_editText.setEnabled(False)
# --------------------------------------------- Contents box double click --------------------------------------------- #
def showContent(self, index):
item = self.Topiclist.selectedIndexes()[0]
get_item = item.model().itemFromIndex(index).text()
int_index = get_item.split(' ')[0]
topic = self.topics[int(int_index) - 1]
contents = self.contents[int(int_index) - 1]
shortword = re.compile(r'\W*\b\w{1,2}\b')
shortword.sub('', topic)
print(topic)
#idx = self.topics.index(topic)
#print(idx)
# html_head = "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"\
# "<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"\
# "p, li { white-space: pre-wrap; }\n"\
# "</style></head><body style=\" font-family:\'Ubuntu\'; font-size:11pt; font-weight:400; font-style:normal;\">\n"\
# "<p style=\" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\">" \
#
# html_tail = "</body></html>"
#
# sentence = html_head
# sentence += "<b>제목</b><br>"
# #sentence += self.topics[idx].replace('\n','') + "<br><br>"
# sentence += topic + "<br>"
# sentence += "<b>내용</b><br>"
# print(sentence)
# #sentence += self.contents[index].replace('\n','')
# sentence += contents
# sentence += "<br>"
# sentence += "<b>저자</b><br>"
# sentence += self.paper_to_author[topic] + "<br>"#"Mayzel-Oreg, Orna, et al.<br>"
# sentence += "<b>출판지 (년도)</b><br>"
# sentence += self.paper_to_journal[topic]#"neurological sciences (2007)"
# sentence += html_tail
#
# _translate = QtCore.QCoreApplication.translate
#
# self.Content_editText.setHtml(_translate("MainWindow", sentence))
# self.Content_editText.setFont(QtGui.QFont('SansSerif', 13))
# self.Content_editText.setAlignment(Qt.AlignCenter) # 가운데 정렬
# self.Content_editText.setAlignment(Qt.AlignVCenter) # 가운데 정렬
idx = self.topics.index(topic)
#self.Set_contextBox(self.Qtext_title, self.topics[idx].replace('\n', ''))
self.Set_contextBox(
self.Qtext_author,
self.paper_to_author[self.topics[idx].replace('\n', '')])
self.Set_contextBox(
self.Qtext_publish,
self.paper_to_journal[self.topics[idx].replace('\n', '')])
self.Set_contextBox(self.Qtext_content,
self.contents[idx].replace('\n', ''))
def show_details(self):
self.get_details(6016, 7422, 62133, 41202, 2758, 2224, 13265, 12890,
8449, 7878, 1005607, 1049783)
self.ad_details.setFont(QtGui.QFont('SansSerif', 11))
self.nc_details.setFont(QtGui.QFont('SansSerif', 11))
self.ad_details.setText(
str(self.ad_hippocampus) + '\n ' + str(self.ad_ventricle) +
'\n ' + str(self.ad_amygdala) + '\n ' + str(self.ad_thalamus) +
'\n ' + str(self.ad_putamen) + '\n ' + str(self.ad_wholebrain))
self.nc_details.setText(
str(self.nc_hippocampus) + '\n ' + str(self.nc_ventricle) +
'\n ' + str(self.nc_amygdala) + '\n ' + str(self.nc_thalamus) +
'\n ' + str(self.nc_putamen) + '\n ' + str(self.nc_wholebrain))
self.ad_details.setAlignment(Qt.AlignCenter) # 가운데 정렬
self.nc_details.setAlignment(Qt.AlignCenter) # 가운데 정렬
# what is this?
def get_details(self, ad_hippo, nc_hippo, ad_vent, nc_vent, ad_amyg,
nc_amyg, ad_thala, nc_thala, ad_puta, nc_puta, ad_wb,
nc_wb):
self.ad_hippocampus = ad_hippo
self.nc_hippocampus = nc_hippo
self.ad_ventricle = ad_vent
self.nc_ventricle = nc_vent
self.ad_amygdala = ad_amyg
self.nc_amygdala = nc_amyg
self.ad_thalamus = ad_thala
self.nc_thalamus = nc_thala
self.ad_putamen = ad_puta
self.nc_putamen = nc_puta
self.ad_wholebrain = ad_wb
self.nc_wholebrain = nc_wb
def open_image_fd(self):
dialog_text = "Open Image"
default_folder = "../Data/brainmask/"
file_info = PyQt5.QtWidgets.QFileDialog.getOpenFileName(
self, dialog_text, default_folder)
patient_list = [
["ADNI_109_S_1157_AD.mgz", "1157", "H.W Kim", "79", "2011.04.07"],
["ADNI_099_S_1144_AD.mgz", "1144", "H.S Kim", "81", "2012.05.28"],
["ADNI_099_S_0372_AD.mgz", "0372", "S.H Kang", "82", "2011.03.28"],
["ADNI_114_S_0374_AD.mgz", "0374", "W.S Lee", "81", "2012.05.28"],
["ADNI_099_S_0470_AD.mgz", "0470", "Y.H Lee", "69", "2011.03.18"],
[
"ADNI_068_S_0127_CN.mgz", "0127", "W.S Chang", "80",
"2012.02.18"
],
["ADNI_094_S_0711_CN.mgz", "0711", "H.G Kim", "77", "2012.02.13"],
[
"ADNI_067_S_0257_CN.mgz", "0257", "W.H Young", "71",
"2012.02.17"
],
[
"ADNI_073_S_0386_CN.mgz", "0386", "W.H Young", "69",
"2012.03.11"
],
["ADNI_073_S_0311_CN.mgz", "0311", "S.F Kim", "81", "2012.05.12"],
[
"ADNI_032_S_0400_AD.mgz", "0400", "F.V Young", "82",
"2011.06.14"
],
["ADNI_002_S_0938_AD.mgz", "0938", "E.B Lee", "88", "2013.01.15"],
[
"ADNI_137_S_0796_AD.mgz", "0796", "A.E Young", "90",
"2011.03.12"
],
["ADNI_021_S_1109_AD.mgz", "1109", "B.A Kim", "91", "2012.07.14"],
["ADNI_036_S_0577_AD.mgz", "0577", "J.G Sang", "70", "2011.08.12"],
["ADNI_021_S_0159_CN.mgz", "0159", "J.H Lee", "80", "2013.09.06"],
["ADNI_052_S_1250_CN.mgz", "1250", "K.E Kim", "81", "2012.01.13"],
["ADNI_005_S_0553_CN.mgz", "0553", "K.Q Bob", "83", "2014.05.14"],
[
"ADNI_033_S_0923_CN.mgz", "0923", "Q.V Young", "84",
"2011.07.19"
],
[
"ADNI_033_S_0516_CN.mgz", "0516", "A.M Young", "91",
"2011.08.12"
],
]
QApplication.setOverrideCursor(Qt.WaitCursor)
file_name, _ = file_info
file_name_t = file_name.split('/')[-1]
self.file_name = file_name_t
for patient in patient_list:
test = patient[0]
if patient[0] == file_name_t:
self.info_id.setText(patient[1])
self.info_name.setText(patient[2])
self.info_age.setText(patient[3])
self.info_date.setText(patient[4])
# Load axial image
self.volume_cntr.Load_volume(file_name)
self.openGLWidget.Volume_change(self.volume_cntr.get_axis_volumes())
# Load Image
axial_size = self.volume_cntr.get_axial_size()
axial_index = self.volume_cntr.get_axial_index()
axial_indexer_text = '{0:03}:{1:03}'.format(axial_index, axial_size)
self.Axial_indexer.setText(axial_indexer_text)
self.Axial_slider.setMinimum(0)
self.Axial_slider.setMaximum(axial_size - 1)
self.Axial_slider.setValue(axial_index)
axial_image = self.volume_cntr.get_axial_image(axial_index)
h, w, c = np.shape(axial_image)
qimage = QImage(axial_image, w, h, 3 * w, QImage.Format_RGB888)
self.Axial_viewer.setPixmap(QPixmap(qimage))
# Load coronal_image
coronal_size = self.volume_cntr.get_coronal_size()
coronal_index = self.volume_cntr.get_coronal_index()
coronal_indexer_text = '{0:03}:{1:03}'.format(coronal_index,
coronal_size)
self.Coronal_indexer.setText(coronal_indexer_text)
self.Coronal_slider.setMinimum(0)
self.Coronal_slider.setMaximum(coronal_size - 1)
self.Coronal_slider.setValue(coronal_index)
coronal_image = self.volume_cntr.get_coronal_image(coronal_index)
h, w, c = np.shape(coronal_image)
qimage = QImage(coronal_image, w, h, 3 * w, QImage.Format_RGB888)
self.Coronal_viewer.setPixmap(QPixmap(qimage))
# Load sagittal_image
sagittal_size = self.volume_cntr.get_sagittal_size()
sagittal_index = self.volume_cntr.get_sagittal_index()
sagittal_indexer_text = '{0:03}:{1:03}'.format(sagittal_index,
sagittal_size)
self.Sagittal_indexer.setText(sagittal_indexer_text)
self.Sagittal_slider.setMinimum(0)
self.Sagittal_slider.setMaximum(sagittal_size - 1)
self.Sagittal_slider.setValue(sagittal_index)
sagittal_image = self.volume_cntr.get_sagittal_image(sagittal_index)
h, w, c = np.shape(sagittal_image)
sagittal_image = np.reshape(sagittal_image, (w, h, c))
qimage = QImage(sagittal_image, w, h, 3 * w, QImage.Format_RGB888)
#h, w, c = np.shape(coronal_image)
#qimage = QImage(coronal_image, w, h, 3 * w, QImage.Format_RGB888)
self.Sagittal_viewer.setPixmap(QPixmap(qimage))
'''
self.image_label = QLabel(self)
pixmap = QPixmap(image)
self.image_label.setPixmap(pixmap)
self.image_label.resize(200,180)
self.image_label.show()
'''
QApplication.restoreOverrideCursor()
class CrowdWindow( QtGui.QMainWindow):
def __init__( self, parent = None ):
self.workThread = None
QtGui.QMainWindow.__init__( self, parent )
self.setWindowTitle( 'Crowd Analysis' )
mainFrame = QtGui.QFrame( self )
mainFrame.setFrameShadow( QtGui.QFrame.Plain )
mainFrame.setFrameShape( QtGui.QFrame.NoFrame )
mainVLayout = QtGui.QHBoxLayout( mainFrame )
mainVLayout.setSpacing( 3 )
mainVLayout.setMargin( 0 )
# Feedback panel
splitter = QtGui.QSplitter( mainFrame )
splitter.setOrientation( QtCore.Qt.Vertical )
# GL Window
wFrame = QtGui.QFrame(splitter)
wLayout = QtGui.QGridLayout( wFrame )
wLayout.setColumnStretch( 0, 0 )
wLayout.setColumnStretch( 1, 1 )
wLayout.setColumnStretch( 2, 0 )
self.glWindow = GLWidget( (10,10),(0,0), (10,10),(0,0), (1,1) )
self.glWindow.setMinimumSize( QtCore.QSize( 640, 480 ) )
wLayout.addWidget( self.glWindow, 0, 0, 1, 3 )
self.playerWidget = PlayerController( self.glWindow )
self.playerWidget.need3DUpdate.connect( self.glWindow.updateGL )
wLayout.addWidget( self.playerWidget, 1, 0, 1, 3 )
wLayout.setRowStretch( 0, 1 )
wLayout.setRowStretch( 1, 0 )
# Console
self.console = Logger( splitter )
QtCore.QObject.connect( self.console, QtCore.SIGNAL('cursorPositionChanged ()'), self.logExtended )
# set up the shared resource
self.rsrc = SystemResource()
self.rsrc.glWindow = self.glWindow
self.rsrc.logger = self.console
sys.stdout = ConsoleFile()
sys.stdout.processMessage.connect( self.console.info )
# Main configuration panel
self.f = QtGui.QFrame()
vLayout = QtGui.QVBoxLayout()
vLayout.setMargin( 0 )
self.analysisBox = AnlaysisWidget( self.rsrc, self )
QtCore.QObject.connect( self.analysisBox, QtCore.SIGNAL('scbLoaded(PyQt_PyObject)'), self.scbLoaded )
vLayout.addWidget( self.analysisBox )
vLayout.addStretch( 1 )
self.f.setLayout( vLayout )
mainVLayout.addWidget( self.f, 0 )
mainVLayout.addWidget( splitter, 1 )
self.setCentralWidget( mainFrame )
self.createActions()
self.createMenus()
self.createStatusBar()
def createActions( self ):
"""Creates the actions for menu actions"""
self.readInConfigAct = QtGui.QAction( "&Read Input Config",
self, statusTip="Read config file for input",
triggered=self.readInConfigFileDlg )
self.saveInConfigAct = QtGui.QAction( "&Save Input Config",
self, statusTip="Save config file for input",
triggered=self.saveInConfigFileDlg )
self.readConfigAct = QtGui.QAction( "&Read Full Config",
self, statusTip="Read config file for full application",
triggered=self.readConfigFileDlg )
self.saveConfigAct = QtGui.QAction( "&Save Full Config",
self, statusTip="Save config file for full application",
triggered=self.saveConfigFileDlg )
self.copyTaskAct = QtGui.QAction( "&Copy Task Settings",
self, statusTip="Copy task parameters from another task into the current task",
triggered=self.copyTaskDlg )
def createMenus( self ):
self.fileMenu = self.menuBar().addMenu("&Input")
self.fileMenu.setEnabled( False )
self.fileMenu.addAction( self.readInConfigAct )
self.fileMenu.addAction( self.saveInConfigAct )
self.settingsMenu = self.menuBar().addMenu("&Settings")
self.settingsMenu.addAction( self.readConfigAct )
self.settingsMenu.addAction( self.saveConfigAct )
self.settingsMenu = self.menuBar().addMenu("&Tasks")
self.settingsMenu.addAction( self.copyTaskAct )
def createStatusBar(self):
self.statusBar().showMessage("Ready")
def readInConfigFileDlg( self ):
"""Spawns a dialog to read an input configuration file"""
pass
def readInConfigFile( self, fileName ):
"""Reads an input configuration file"""
self.console.info( "Read input file" )
def saveInConfigFileDlg( self ):
"""Spawns a dialog to save an input configuration file"""
pass
def saveInConfigFile( self, fileName ):
'''Returns a Config object reflecting the configuration of the input panel'''
pass
def readConfigFileDlg( self ):
"""Spawns a dialog to read a full project configuration file"""
fileName = QtGui.QFileDialog.getOpenFileName( self, "Read application config file", self.rsrc.lastFolder, "Config files (*.cfg)" )
if ( fileName ):
self.readConfigFile( fileName )
path, fName = os.path.split( str( fileName ) )
self.rsrc.lastFolder = path
def readConfigFile( self, fileName ):
"""Reads a configuration file for the full application"""
try:
self.analysisBox.readConfig( fileName )
path, name = os.path.split( fileName )
self.rsrc.lastFolder = path
self.console.info( 'Read full config file %s\n' % fileName )
except IOError, ValueError:
self.console.error( 'Error reading full config file %s\n' % fileName )
