def main(fname, output=None):
print("Input name", fname)
print("Output name", output)
tellpath = "/home/jneal/Phd/Codes/Phd-codes/WavelengthCalibration/testfiles/" # Updated for git repo
#ext = 0 # for testing
#hdr, data = Get_DRACS(fname, ext) #Get DRACS only finds relevant file in the path folder
hdr = fits.getheader(fname)
print("Observation time ", hrd[])
data = fits.getdata(fname)
uncalib_combined = data["Combined"]
#uncalib_noda = uncalib_data["Nod A"]
#uncalib_nodb = uncalib_data["Nod B"]
uncalib_data = [range(1,len(uncalib_combined)+1), uncalib_combined]
# get hdr information and then find coresponding Telluric spectra
calib_data = IOmodule.read_2col(tellpath + "Telluric_spectra_CRIRES_Chip-" +
str(1) + ".txt")
gf.print_fit_instructions()
rough_a, rough_b = gf.get_rough_peaks(uncalib_data[0], uncalib_data[1], calib_data[0], calib_data[1])
rough_x_a = [coord[0] for coord in rough_a]
rough_x_b = [coord[0] for coord in rough_b]
good_a, good_b = gf.adv_wavelength_fitting(uncalib_data[0], uncalib_data[1],
rough_x_a, calib_data[0], calib_data[1],
rough_x_b)
wl_map = gf.wavelength_mapping(good_a, good_b)
calibrated_wl = np.polyval(wl_map, uncalib_data[0])
plt.plot(calibrated_wl, uncalib_data[1], label="Calibrated spectra")
plt.plot(calib_data[0], calib_data[1], label="Telluric spectra")
plt.title("Calibration Output")
plt.show()
if __name__ == "__main__":
# Do the test case HD30501-1 Chip-1
path = "/home/jneal/Phd/Codes/Phd-codes/WavelengthCalibration/testfiles/" # Updated for git repo
#global param_nums
#param_nums = 3
Dracspath = "/home/jneal/Phd/data/Crires/BDs-DRACS/"
obj = "HD30501-1"
objpath = Dracspath + obj + "/"
chip = 0 # for testing
hdr, DracsUncalibdata = Get_DRACS(objpath,0)
UnCalibdata_comb = DracsUncalibdata["Combined"]
#UnCalibdata_noda = DracsUncalibdata["Nod A"]
#UnCalibdata_nodb = DracsUncalibdata["Nod B"]
UnCalibdata = [range(1,1025), UnCalibdata_comb]
Calibdata = IOmodule.read_2col(path + "Telluric_spectra_CRIRES_Chip-" +
str( 1) + ".txt")
#print(Calibdata)
#get_rough_peaks()
Test_pxl_pos = [58.4375, 189.0625, 583.0, 688.1875, 715.6875, 741.8125,
971.4375]
Test_wl_pos = [2112.4897175403221, 2114.0333233870965, 2118.5533179435483,
2119.748622983871, 2120.0573441532256, 2120.358149395161,
2122.9624895161287]
CoordsA = Test_pxl_pos # first one for now
CoordsB = Test_wl_pos
print_fit_instructions()
#Comment Below line to skip this and work on next part
good_coords_a, good_coords_b = adv_wavelength_fitting(UnCalibdata[0], UnCalibdata[1],
CoordsA, Calibdata[0], Calibdata[1],
