예제 #1
0
def exportMotifControlSequences(infile, outfile):
    '''for each interval, export the left and right
    sequence segment of the same size.
    '''
    PipelineMotifs.exportSequencesFromBedFile(infile,
                                              outfile,
                                              masker=PARAMS['motifs_masker'],
                                              mode="leftright")
예제 #2
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def exportMotifIntervalSequences(infile, outfile):
    '''export sequences for motif detection.

    This method requires the _interval tables.
    '''
    PipelineMotifs.exportSequencesFromBedFile(infile,
                                              outfile,
                                              masker=PARAMS['motifs_masker'])