def get_values_matrix(Window, x, y, temp_file, ProtoWindow):
"""
This program gets 2 positions from a matrix of labels (it is called 2 times each to add one position).
Entry:
Window(Frame): the protocol window
x: the first value to get
y(Label variable): the second value to get
temp_file(string): the name of the file
ProtoWindow(Frame): the protocol frame
"""
protocole = Prot.ReadProtocolFile(temp_file)
pos = protocole.index(['position'])
protocole[pos - 1] = protocole[pos - 1] + [x, y]
Prot.EcrireProtocoleFichier(protocole, 'temp.txt')
if len(protocole[pos - 1]) == 5:
Prot.AfficherProtocol(ProtoWindow, protocole)
Window.destroy()
def Delete(Window, ProtoWindow, temp_file):
"""
This program adds the pipeting instruction.
Entry:
Window(Frame): the protocol window
ProtoWindow(Frame): the protocol frame
temp_file(string): the name of the file
"""
protocole = Prot.ReadProtocolFile(temp_file)
os.remove(temp_file)
pos = protocole.index(['position'])
if pos > 1:
a = protocole[:pos - 1]
else:
a = []
b = protocole[pos:]
protocole = a + b
Prot.EcrireProtocoleFichier(protocole, 'temp.txt')
ProtoWindow = Prot.AfficherProtocol(ProtoWindow, protocole)
return 1
def thaw(Window, ProtoWindow, temp_file):
"""
This program adds the pipeting instruction.
Entry:
Window(Frame): the protocol window
ProtoWindow(Frame): the protocol frame
temp_file(string): the name of the file
"""
protocole = Prot.ReadProtocolFile(temp_file)
pos = protocole.index(['position'])
a = protocole[:pos]
if a == []:
a = [['tha']]
else:
a = a + [['tha']]
b = protocole[pos:]
protocole = a + b
Prot.EcrireProtocoleFichier(protocole, 'temp.txt')
Prot.AfficherProtocol(ProtoWindow, protocole)
return 1
def Save(Window, ProtoWindow, temp_file):
"""
This program adds the pipeting instruction.
Entry:
Window(Frame): the protocol window
ProtoWindow(Frame): the protocol frame
temp_file(string): the name of the file
"""
protocole = Prot.ReadProtocolFile(temp_file)
os.remove(temp_file)
pos = protocole.index(['position'])
protocole = protocole[:pos] + protocole[pos + 1:]
filename = asksaveasfile(title="Save the protocol as",
filetypes=[('txt files', '.txt'),
('all files', '.*')])
filename = str(filename)
filename = filename.split("'")
filename = filename[1]
Prot.EcrireProtocoleFichier(protocole, filename)
Window.destroy()
return 1
def PosUp(Window, ProtoWindow, temp_file):
"""
This program adds the pipeting instruction.
Entry:
Window(Frame): the protocol window
ProtoWindow(Frame): the protocol frame
temp_file(string): the name of the file
"""
protocole = Prot.ReadProtocolFile(temp_file)
pos = protocole.index(['position'])
sze = len(protocole)
a = protocole[:pos - 1]
b = [protocole[pos - 1]]
if pos < sze:
c = protocole[pos + 1:]
else:
c = []
protocole = a + [['position']] + b + c
Prot.EcrireProtocoleFichier(protocole, 'temp.txt')
Prot.AfficherProtocol(ProtoWindow, protocole)
return 1
def pipet(Window, ProtoWindow, temp_file):
"""
This program adds the pipeting instruction.
Entry:
Window(Frame): the protocol window
ProtoWindow(Frame): the protocol frame
temp_file(string): the name of the file
"""
protocole = Prot.ReadProtocolFile(temp_file)
pos = protocole.index(['position'])
a = protocole[:pos]
if a == []:
a = [['pip']]
else:
a = a + [['pip']]
b = protocole[pos:]
#Create the new window
Window_option = Toplevel(Window)
Window_option.title('Neurodrop - Pipette calibration')
#Create the heading of the new window
Heading = Create_Heading(Window_option)
#Create the choices of solutions and the slider for the volume
Solution = Create_Frame(Window_option,
border_thickness=5,
style_border='groove',
back_colour=sty.Bkg_frm_blue,
col=1,
line=2,
nblines=2,
nbcolumns=8,
form='wens')
Create_text(Solution,
'Choose the solution',
color=sty.Clr_txt_frames,
Police=sty.Font_frames_title,
back_colour=sty.Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=4,
nblines=1)
var = IntVar()
for i in [1, 2, 3, 4]:
R = Radiobutton(Solution,
text="Solution " + str(i),
variable=var,
value=i,
bg=sty.Bkg_frm_blue)
R.grid(column=i, row=3, columnspan=1, rowspan=1, sticky='we')
scale = IntVar()
Volume = Create_Frame(Window_option,
border_thickness=5,
style_border='groove',
back_colour=sty.Bkg_frm_blue,
col=1,
line=5,
nblines=2,
nbcolumns=8,
form='wens')
Create_text(Volume,
'Choose the volume (in nL)',
color=sty.Clr_txt_frames,
Police=sty.Font_frames_title,
back_colour=sty.Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=1,
nblines=1)
volscale = Scale(Volume,
from_=200,
to=10000,
resolution=50,
variable=scale,
showvalue=True,
label='nL',
orient='horizontal',
bg=sty.Bkg_frm_blue,
length=30)
volscale.grid(column=1, row=3, columnspan=1, rowspan=1, sticky='we')
Confirm = Create_Frame(Window_option,
border_thickness=5,
style_border='groove',
back_colour=sty.Bkg_frm_blue,
col=1,
line=8,
nblines=1,
nbcolumns=8,
form='wens')
Create_text(Confirm,
'Save parameters',
color=sty.Clr_txt_frames,
Police=sty.Font_frames_title,
back_colour=sty.Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=1,
nblines=1)
Create_button(
Confirm, 'OK',
partial(get_value_2, Window_option, scale, var, a + b,
ProtoWindow)).grid(column=1,
row=3,
columnspan=1,
rowspan=1,
sticky='wens')
#Configure the window
W = [
Window_option, Window_option, Heading, Solution, Solution, Volume,
Volume, Confirm, Confirm
]
Lines = [[0, 2, 3, 4, 6, 7, 8], [1, 5, 9], [0], [0, 2, 4], [1, 3],
[0, 2, 4], [1, 3], [0, 2, 4], [1, 3]]
Columns = [[1, 2, 3, 4, 5, 6, 7, 8], [0, 9], [0, 1, 2, 3, 4, 5, 6, 7],
[0, 5], [1, 2, 3, 4], [0, 2], [1], [0, 2], [1]]
WC = [0, 1, 1, 1, 0, 1, 0, 1, 0]
WL = [0, 1, 0, 1, 0, 1, 0, 1, 0]
for i in range(len(W)):
Auto_configure(W[i],
lines=Lines[i],
columns=Columns[i],
min_size_col=10,
min_size_row=10,
weight_col=WC[i],
weight_row=WL[i])
return 1
def wait(Window, ProtoWindow, temp_file):
"""
This program adds the temperature instruction.
Entry:
Window(Frame): the protocol window
ProtoWindow(Frame): the protocol frame
temp_file(string): the name of the file
"""
protocole = Prot.ReadProtocolFile(temp_file)
pos = protocole.index(['position'])
a = protocole[:pos]
if a == []:
a = [['wai']]
else:
a = a + [['wai']]
b = protocole[pos:]
#Create the new window
Window_option = Toplevel(Window)
Window_option.title('Neurodrop - Waiting calibration')
#Create the heading of the new window
Heading = Create_Heading(Window_option)
#Create the choices of solutions and the slider for the volume
Tme = Create_Frame(Window_option,
border_thickness=5,
style_border='groove',
back_colour=sty.Bkg_frm_blue,
col=1,
line=2,
nblines=5,
nbcolumns=8,
form='wens')
Create_text(Tme,
'Define the number of seconds you want to wait',
color=sty.Clr_txt_frames,
Police=sty.Font_frames_title,
back_colour=sty.Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=1,
nblines=1)
tim = StringVar()
Create_entry(Tme,
tim,
Width=30,
Police='Arial 25',
col=1,
line=3,
form='wens',
nblines=1)
Confirm = Create_Frame(Window_option,
border_thickness=5,
style_border='groove',
back_colour=sty.Bkg_frm_blue,
col=1,
line=8,
nblines=1,
nbcolumns=8,
form='wens')
Create_text(Confirm,
'Save parameters',
color=sty.Clr_txt_frames,
Police=sty.Font_frames_title,
back_colour=sty.Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=1,
nblines=1)
Create_button(Confirm, 'OK',
partial(get_value_1, Window_option, tim, a + b,
ProtoWindow)).grid(column=1,
row=3,
columnspan=1,
rowspan=1,
sticky='wens')
#Configure the window
W = [Window_option, Window_option, Heading, Tme, Tme, Confirm, Confirm]
Lines = [[0, 2, 3, 4, 6, 7, 8], [1, 5, 9], [0], [0, 2, 4], [1, 3],
[0, 2, 4], [1, 3]]
Columns = [[1, 2, 3, 4, 5, 6, 7, 8], [0, 9], [0, 1, 2, 3, 4, 5, 6, 7],
[0, 2], [1], [0, 2], [1]]
WC = [0, 1, 1, 1, 0, 1, 0, 1, 0]
WL = [0, 1, 0, 1, 0, 1, 0, 1, 0]
for i in range(len(W)):
Auto_configure(W[i],
lines=Lines[i],
columns=Columns[i],
min_size_col=10,
min_size_row=10,
weight_col=WC[i],
weight_row=WL[i])
return 1
def move(Window, ProtoWindow, temp_file):
"""
This program adds the pipeting instruction.
Entry:
Window(Frame): the protocol window
ProtoWindow(Frame): the protocol frame
temp_file(string): the name of the file
"""
protocole = Prot.ReadProtocolFile(temp_file)
pos = protocole.index(['position'])
a = protocole[:pos]
if a == []:
a = [['mov']]
else:
a = a + [['mov']]
b = protocole[pos:]
Prot.EcrireProtocoleFichier(a + b, 'temp.txt')
#Create the new window
Window_option = Toplevel(Window)
Window_option.title('Neurodrop - Movement calibration')
#Create the heading of the new window
Heading = Create_Heading(Window_option)
#Create the button matrix to choose the displacement
canvas = Canvas(Window_option, width=750, height=600)
scroll_y = Scrollbar(Window_option,
orient="vertical",
command=canvas.yview)
Matrix = Create_Frame(canvas,
border_thickness=0,
style_border='solid',
back_colour=sty.Bkg_frm_blue,
col=1,
line=2,
nblines=6,
nbcolumns=8,
form='wens')
fichier = open('list_pad.csv', 'r')
lines = fichier.readlines()
fichier.close()
for i in range(len(lines)):
lines[i] = lines[i].replace('\n', "")
lines[i] = lines[i].split(';')
#lines[i][-1]=lines[i][-1][:-1] #We get rid of the jumpline symbols
lines[0][0] = lines[0][0][1:]
for l in range(len(lines)):
lin = l
for col in range(len(lines[l])):
if (lines[l][col] != '0'):
Create_button(Matrix,
'',
partial(get_values_matrix, Window_option, l, col,
temp_file, ProtoWindow),
color='#000000',
activefg='#318ce7',
Width=2,
Height=1,
Police='Arial 10',
col=1 + col,
line=3 + l,
form='wens',
nblines=1,
pady=0)
Create_text(Matrix,
'Select the departure and the arriving pads',
color=sty.Clr_txt_frames,
Police=sty.Font_frames_title,
back_colour=sty.Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=col + 1,
nblines=1)
Create_text(Matrix,
'END',
color=sty.Bkg_frm_blue,
Police=sty.Font_frames_title,
back_colour=sty.Bkg_frm_blue,
col=1,
line=lin + 5,
form='wens',
nbcolumns=col,
nblines=1)
canvas.create_window(0, 0, anchor='nw', window=Matrix)
canvas.update_idletasks()
canvas.configure(scrollregion=canvas.bbox('all'),
yscrollcommand=scroll_y.set)
canvas.grid(row=2, column=1, rowspan=6, columnspan=7, sticky='wens')
scroll_y.grid(row=2, column=8, rowspan=6, columnspan=1, sticky='ns')
#Configure the window
W = [Window_option, Window_option, Heading, Matrix, Matrix]
Lines = [[0, 2, 3, 4, 5, 6, 7, 8], [1, 9], [0], [0, 2, lin + 5],
[1] + [i for i in range(3, lin + 4)]]
Columns = [[1, 2, 3, 4, 5, 6, 7, 8], [0, 9], [0, 1, 2, 3, 4, 5, 6, 7],
[1] + [i for i in range(2, col + 2)], [0, col + 2]]
WC = [0, 1, 1, 1, 0, 1, 0]
WL = [0, 1, 0, 1, 0, 1, 0]
for i in range(len(W)):
Auto_configure(W[i],
lines=Lines[i],
columns=Columns[i],
min_size_col=10,
min_size_row=10,
weight_col=WC[i],
weight_row=WL[i])
def measure(Window, ProtoWindow, temp_file):
"""
This program adds the pipeting instruction.
Entry:
Window(Frame): the protocol window
ProtoWindow(Frame): the protocol frame
temp_file(string): the name of the file
"""
protocole = Prot.ReadProtocolFile(temp_file)
pos = protocole.index(['position'])
a = protocole[:pos]
if a == []:
a = [['lum']]
else:
a = a + [['lum']]
b = protocole[pos:]
#Create the new window
Window_option = Toplevel(Window)
Window_option.title('Neurodrop - Measurement calibration')
#Create the heading of the new window
Heading = Create_Heading(Window_option)
#Create the choices of solutions and the slider for the volume
Nb_measurements = Create_Frame(Window_option,
border_thickness=5,
style_border='groove',
back_colour=Bkg_frm_blue,
col=1,
line=2,
nblines=2,
nbcolumns=8,
form='wens')
Create_text(Nb_measurements,
'Enter the number of measurements to perform',
color=Clr_txt_frames,
Police=Font_frames_title,
back_colour=Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=3,
nblines=1)
nb_mes = StringVar()
Create_entry(Nb_measurements,
nb_mes,
Width=30,
Police='Arial 25',
col=1,
line=3,
form='wens',
nblines=1)
Time_inter = Create_Frame(Window_option,
border_thickness=5,
style_border='groove',
back_colour=Bkg_frm_blue,
col=1,
line=5,
nblines=2,
nbcolumns=8,
form='wens')
Create_text(Time_inter,
'Enter the time between each measurements (in ms)',
color=Clr_txt_frames,
Police=Font_frames_title,
back_colour=Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=3,
nblines=1)
tme_mes = StringVar()
Create_entry(Time_inter,
tme_mes,
Width=30,
Police='Arial 25',
col=1,
line=3,
form='wens',
nblines=1)
Confirm = Create_Frame(Window_option,
border_thickness=5,
style_border='groove',
back_colour=Bkg_frm_blue,
col=1,
line=8,
nblines=1,
nbcolumns=8,
form='wens')
Create_text(Confirm,
'Save parameters',
color=Clr_txt_frames,
Police=Font_frames_title,
back_colour=Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=1,
nblines=1)
Create_button(
Confirm, 'OK',
partial(get_value_2, Window_option, nb_mes, tme_mes, a + b,
ProtoWindow)).grid(column=1,
row=3,
columnspan=1,
rowspan=1,
sticky='wens')
#Configure the window
W = [
Window_option, Window_option, Heading, Nb_measurements,
Nb_measurements, Time_inter, Time_inter, Confirm, Confirm
]
Lines = [[0, 2, 3, 4, 6, 7, 8], [1, 5, 9], [0], [0, 2, 4], [1, 3],
[0, 2, 4], [1, 3], [0, 2, 4], [1, 3]]
Columns = [[1, 2, 3, 4, 5, 6, 7, 8], [0, 9], [0, 1, 2, 3, 4, 5, 6, 7],
[0, 4], [1, 2, 3], [0, 2], [1], [0, 2], [1]]
WC = [0, 1, 1, 1, 0, 1, 0, 1, 0]
WL = [0, 1, 0, 1, 0, 1, 0, 1, 0]
for i in range(len(W)):
Auto_configure(W[i],
lines=Lines[i],
columns=Columns[i],
min_size_col=10,
min_size_row=10,
weight_col=WC[i],
weight_row=WL[i])
return 1
def move(Window, ProtoWindow, temp_file):
"""
This program adds the pipeting instruction.
Entry:
Window(Frame): the protocol window
ProtoWindow(Frame): the protocol frame
temp_file(string): the name of the file
"""
protocole = Prot.ReadProtocolFile(temp_file)
pos = protocole.index(['position'])
a = protocole[:pos]
if a == []:
a = [['mov']]
else:
a = a + [['mov']]
b = protocole[pos:]
Prot.EcrireProtocoleFichier(a + b, 'temp.txt')
#Create the new window
Window_option = Toplevel(Window)
Window_option.title('Neurodrop - Movement calibration')
#Create the heading of the new window
Heading = Create_Heading(Window_option)
#Create the button matrix to choose the displacement
Matrix = Create_Frame(Window_option,
border_thickness=5,
style_border='groove',
back_colour=Bkg_frm_blue,
col=1,
line=2,
nblines=7,
nbcolumns=8,
form='wens')
Pds_per_line = [10, 10, 10, 10, 10, 10, 10, 10]
Create_text(Matrix,
'Select the departure and the arriving pads',
color=Clr_txt_frames,
Police=Font_frames_title,
back_colour=Bkg_frm_blue,
col=1,
line=1,
form='wens',
nbcolumns=max(Pds_per_line),
nblines=1)
for k in range(len(Pds_per_line)):
for nb in range(Pds_per_line[k]):
for i in range(nb):
Create_button(Matrix,
'',
partial(get_values_matrix, Window_option, i, k,
temp_file, ProtoWindow),
color='#000000',
activefg='#318ce7',
Width=1,
Height=1,
Police='Arial 20',
col=1 + i,
line=3 + k,
form='wens',
nblines=1)
#Configure the window
W = [Window_option, Window_option, Heading, Matrix, Matrix]
Lines = [[0, 2, 3, 4, 5, 6, 7, 8], [1, 9], [0], [0, 2, 4], [1, 3],
[0, 2, len(Pds_per_line)],
[1] + [i for i in range(3, 2 + len(Pds_per_line))]]
Columns = [[1, 2, 3, 4, 5, 6, 7, 8], [0, 9], [0, 1, 2, 3, 4, 5, 6, 7],
[0, 4], [1] + [i for i in range(max(Pds_per_line))],
[0, max(Pds_per_line)]]
WC = [0, 1, 1, 1, 0, 1, 0]
WL = [0, 1, 0, 1, 0, 1, 0]
for i in range(len(W)):
Auto_configure(W[i],
lines=Lines[i],
columns=Columns[i],
min_size_col=10,
min_size_row=10,
weight_col=WC[i],
weight_row=WL[i])
