def run_once(cmd_input_file=None, galaxy_input=None, triout=None, rmfiles=False,
dry_run=False, do_norm=True, do_norm_kw={},
cols=None, filter1=None, filter2=None, target=None,
fake_file=None):
cmd_input_file = do_norm_kw.get('cmd_input_file', cmd_input_file)
galaxy_input = do_norm_kw.get('galaxy_input', galaxy_input)
filter1 = do_norm_kw.get('filter1', filter1)
filter2 = do_norm_kw.get('filter2', filter2)
target = do_norm_kw.get('target', target)
fake_file = do_norm_kw.get('fake_file', fake_file)
ast_corr = do_norm_kw.get('ast_corr', False)
diag_plot = do_norm_kw.get('diag_plot', False)
triout = do_norm_kw.get('triout', triout)
rsp.trilegal.utils.run_trilegal(cmd_input_file, galaxy_input, triout,
rmfiles=rmfiles, dry_run=dry_run)
if ast_corr is True and dry_run is False:
assert fake_file is not None, 'Need fake file for ast corrections'
logger.info('adding ast corrections to {}'.format(triout))
sgal = load_trilegal_catalog(triout, filter1, filter2, only_keys=None)
rsp.ast_correct_starpop(sgal, overwrite=True, outfile=triout,
fake_file=fake_file, diag_plot=False)
do_norm_kw['sgal'] = sgal
if do_norm:
do_norm_kw['triout'] = triout
sgal, norm, inorm, (srgb, sagb), (rgb, agb) = \
do_normalization(**do_norm_kw)
if ast_corr:
filter1 = '%s_cor' % filter1
filter2 = '%s_cor' % filter2
result_dict = gather_results(sgal, norm, target, filter1, filter2,
narratio_dict={'rgb': rgb, 'agb': agb,
'srgb': srgb, 'sagb': sagb,
'inorm': inorm})
result_dict['contam_line'] = contamination_by_phases(sgal, srgb, sagb,
filter2)
#if diag_plot:
#model_cmd_withasts(sgal, rgb=rgb, agb=agb, inorm=inorm,
# **do_norm_kw)
#import pdb; pdb.set_trace()
return result_dict, ast_corr
def prepare_outfiles(inps, inp_extra):
"""
set up default output file syntax
"""
# where things are going
if inps.outfile_loc is None:
inps.outfile_loc = os.path.split(inps.matchphot)[0]
assert os.path.isdir(inps.outfile_loc), 'bad output directory'
else:
rsp.fileio.ensure_dir(inps.outfile_loc)
inps.target, inps.filter1, inps.filter2 = rsp.parse_pipeline(inps.matchphot)
# trilegal sfr filename
inps.object_sfr_file = os.path.join(inps.outfile_loc,
'{0}{1}.trisfr'.format(inps.target,
inp_extra))
# trilegal galaxy input filename
inps.galaxy_input = os.path.join(inps.outfile_loc,
'{0}{1}.galinp'.format(inps.target,
inp_extra))
return inps
