else:
job = ed.interpretPayload(job, res, getstatusoutput_was_interrupted, current_job_number, runCommandList, runJob.getFailureCode())
if job.result[1] != 0 or job.result[2] != 0:
runJob.failJob(job.result[1], job.result[2], job, pilotErrorDiag=job.pilotErrorDiag)
# stage-out ........................................................................................
# update the job state file
tolog(runJob.getOutputDir())
job.jobState = "stageout"
#_retjs = JR.updateJobStateTest(job, jobSite, node, mode="test")
# verify and prepare and the output files for transfer
ec, pilotErrorDiag, outs, outsDict = RunJobUtilities.prepareOutFiles(job.outFiles, job.logFile, job.workdir)
if ec:
# missing output file (only error code from prepareOutFiles)
runJob.failJob(job.result[1], ec, job, pilotErrorDiag=pilotErrorDiag)
tolog("outsDict: %s" % str(outsDict))
# update the current file states
updateFileStates(outs, runJob.getParentWorkDir(), job.jobId, mode="file_state", state="created")
dumpFileStates(runJob.getParentWorkDir(), job.jobId)
# create xml string to pass to dispatcher for atlas jobs
outputFileInfo = {}
if outs or (job.logFile and job.logFile != ''):
# get the datasets for the output files
dsname, datasetDict = runJob.getDatasets(job)
if job.result[1] != 0 or job.result[2] != 0:
runJob.failJob(job.result[1],
job.result[2],
job,
pilotErrorDiag=job.pilotErrorDiag)
# stage-out ........................................................................................
# update the job state file
tolog(runJob.getOutputDir())
job.jobState = "stageout"
#_retjs = JR.updateJobStateTest(job, jobSite, node, mode="test")
# verify and prepare and the output files for transfer
ec, pilotErrorDiag, outs, outsDict = RunJobUtilities.prepareOutFiles(
job.outFiles, job.logFile, job.workdir)
if ec:
# missing output file (only error code from prepareOutFiles)
runJob.failJob(job.result[1],
ec,
job,
pilotErrorDiag=pilotErrorDiag)
tolog("outsDict: %s" % str(outsDict))
# update the current file states
updateFileStates(outs,
runJob.getParentWorkDir(),
job.jobId,
mode="file_state",
state="created")
dumpFileStates(runJob.getParentWorkDir(), job.jobId)
#else:
# job = ed.interpretPayload(job, res, getstatusoutput_was_interrupted, current_job_number, runCommandList, runJob.getFailureCode())
if job.result[1] != 0 or job.result[2] != 0:
runJob.failJob(job.result[1], job.result[2], job, pilotErrorDiag=job.pilotErrorDiag)
# stage-out ........................................................................................
# update the job state file
tolog(runJob.getOutputDir())
job.jobState = "stageout"
#_retjs = JR.updateJobStateTest(job, jobSite, node, mode="test")
# verify and prepare and the output files for transfer
ec, pilotErrorDiag, outs, outsDict = RunJobUtilities.prepareOutFiles(job.outFiles, job.logFile, runJob.job_path)
if ec:
# missing output file (only error code from prepareOutFiles)
runJob.failJob(job.result[1], ec, job, pilotErrorDiag=pilotErrorDiag)
tolog("outsDict: %s" % str(outsDict))
# update the current file states
updateFileStates(outs, runJob.getParentWorkDir(), job.jobId, mode="file_state", state="created")
dumpFileStates(runJob.getParentWorkDir(), job.jobId)
# create xml string to pass to dispatcher for atlas jobs
outputFileInfo = {}
if outs or (job.logFile and job.logFile != ''):
# get the datasets for the output files
dsname, datasetDict = runJob.getDatasets(job)
def finishJob(self):
try:
self.__hpcManager.finishJob()
except:
tolog(sys.exc_info()[1])
tolog(sys.exc_info()[2])
# If payload leaves the input files, delete them explicitly
if self.__job.inFiles:
ec = pUtil.removeFiles(self.__job.workdir, self.__job.inFiles)
#if self.__output_es_files:
# ec = pUtil.removeFiles("/", self.__output_es_files)
errorCode = PilotErrors.ERR_UNKNOWN
if self.__job.attemptNr < 4:
errorCode = PilotErrors.ERR_ESRECOVERABLE
#check HPC job status
#if self.__hpcStatus:
# self.failJob(0, 1220, self.__job, pilotErrorDiag="HPC job failed")
if len(self.__eventRanges) == 0:
tolog("Cannot get event ranges")
self.failJob(0, errorCode, self.__job, pilotErrorDiag="Cannot get event ranges")
# check whether all event ranges are handled
tolog("Total event ranges: %s" % len(self.__eventRanges))
not_handled_events = self.__eventRanges.values().count('new')
tolog("Not handled events: %s" % not_handled_events)
done_events = self.__eventRanges.values().count('Done')
tolog("Finished events: %s" % done_events)
stagedOut_events = self.__eventRanges.values().count('stagedOut')
tolog("stagedOut but not updated to panda server events: %s" % stagedOut_events)
if done_events + stagedOut_events:
errorCode = PilotErrors.ERR_ESRECOVERABLE
if not_handled_events + stagedOut_events:
tolog("Not all event ranges are handled. failed job")
self.failJob(0, errorCode, self.__job, pilotErrorDiag="Not All events are handled(total:%s, left:%s)" % (len(self.__eventRanges), not_handled_events + stagedOut_events))
dsname, datasetDict = self.getDatasets()
tolog("dsname = %s" % (dsname))
tolog("datasetDict = %s" % (datasetDict))
# Create the output file dictionary needed for generating the metadata
ec, pilotErrorDiag, outs, outsDict = RunJobUtilities.prepareOutFiles(self.__job.outFiles, self.__job.logFile, self.__job.workdir, fullpath=True)
if ec:
# missing output file (only error code from prepareOutFiles)
self.failJob(self.__job.result[1], ec, self.__job, pilotErrorDiag=pilotErrorDiag)
tolog("outsDict: %s" % str(outsDict))
# Create metadata for all successfully staged-out output files (include the log file as well, even if it has not been created yet)
ec, job, outputFileInfo = self.createFileMetadata([], self.__job, outsDict, dsname, datasetDict, self.__jobSite.sitename)
if ec:
self.failJob(0, ec, job, pilotErrorDiag=job.pilotErrorDiag)
# Rename the metadata produced by the payload
# if not pUtil.isBuildJob(outs):
self.moveTrfMetadata(self.__job.workdir, self.__job.jobId)
# Check the job report for any exit code that should replace the res_tuple[0]
res0, exitAcronym, exitMsg = self.getTrfExitInfo(0, self.__job.workdir)
res = (res0, exitMsg, exitMsg)
# Payload error handling
ed = ErrorDiagnosis()
job = ed.interpretPayload(self.__job, res, False, 0, self.__runCommandList, self.getFailureCode())
if job.result[1] != 0 or job.result[2] != 0:
self.failJob(job.result[1], job.result[2], job, pilotErrorDiag=job.pilotErrorDiag)
self.__job = job
job.jobState = "finished"
job.setState([job.jobState, 0, 0])
job.jobState = job.result
rt = RunJobUtilities.updatePilotServer(job, self.getPilotServer(), self.getPilotPort(), final=True)
tolog("Done")
self.sysExit(self.__job)
if job.result[1] != 0 or job.result[2] != 0:
runJob.failJob(job.result[1],
job.result[2],
job,
pilotErrorDiag=job.pilotErrorDiag)
# stage-out ........................................................................................
# update the job state file
tolog(runJob.getOutputDir())
job.jobState = "stageout"
#_retjs = JR.updateJobStateTest(job, jobSite, node, mode="test")
# verify and prepare and the output files for transfer
ec, pilotErrorDiag, outs, outsDict = RunJobUtilities.prepareOutFiles(
job.outFiles, job.logFile, runJob.job_path)
if ec:
# missing output file (only error code from prepareOutFiles)
runJob.failJob(job.result[1],
ec,
job,
pilotErrorDiag=pilotErrorDiag)
tolog("outsDict: %s" % str(outsDict))
# update the current file states
updateFileStates(outs,
runJob.getParentWorkDir(),
job.jobId,
mode="file_state",
state="created")
dumpFileStates(runJob.getParentWorkDir(), job.jobId)
def finishJob(self):
try:
self.__hpcManager.finishJob()
except:
tolog(sys.exc_info()[1])
tolog(sys.exc_info()[2])
# If payload leaves the input files, delete them explicitly
if self.__job.inFiles:
ec = pUtil.removeFiles(self.__job.workdir, self.__job.inFiles)
#if self.__output_es_files:
# ec = pUtil.removeFiles("/", self.__output_es_files)
errorCode = PilotErrors.ERR_UNKNOWN
if self.__job.attemptNr < 4:
errorCode = PilotErrors.ERR_ESRECOVERABLE
#check HPC job status
#if self.__hpcStatus:
# self.failJob(0, 1220, self.__job, pilotErrorDiag="HPC job failed")
if len(self.__eventRanges) == 0:
tolog("Cannot get event ranges")
self.failJob(0,
errorCode,
self.__job,
pilotErrorDiag="Cannot get event ranges")
# check whether all event ranges are handled
tolog("Total event ranges: %s" % len(self.__eventRanges))
not_handled_events = self.__eventRanges.values().count('new')
tolog("Not handled events: %s" % not_handled_events)
done_events = self.__eventRanges.values().count('Done')
tolog("Finished events: %s" % done_events)
stagedOut_events = self.__eventRanges.values().count('stagedOut')
tolog("stagedOut but not updated to panda server events: %s" %
stagedOut_events)
if done_events + stagedOut_events:
errorCode = PilotErrors.ERR_ESRECOVERABLE
if not_handled_events + stagedOut_events:
tolog("Not all event ranges are handled. failed job")
self.failJob(
0,
errorCode,
self.__job,
pilotErrorDiag="Not All events are handled(total:%s, left:%s)"
% (len(self.__eventRanges),
not_handled_events + stagedOut_events))
dsname, datasetDict = self.getDatasets()
tolog("dsname = %s" % (dsname))
tolog("datasetDict = %s" % (datasetDict))
# Create the output file dictionary needed for generating the metadata
ec, pilotErrorDiag, outs, outsDict = RunJobUtilities.prepareOutFiles(
self.__job.outFiles,
self.__job.logFile,
self.__job.workdir,
fullpath=True)
if ec:
# missing output file (only error code from prepareOutFiles)
self.failJob(self.__job.result[1],
ec,
self.__job,
pilotErrorDiag=pilotErrorDiag)
tolog("outsDict: %s" % str(outsDict))
# Create metadata for all successfully staged-out output files (include the log file as well, even if it has not been created yet)
ec, job, outputFileInfo = self.createFileMetadata(
[], self.__job, outsDict, dsname, datasetDict,
self.__jobSite.sitename)
if ec:
self.failJob(0, ec, job, pilotErrorDiag=job.pilotErrorDiag)
# Rename the metadata produced by the payload
# if not pUtil.isBuildJob(outs):
self.moveTrfMetadata(self.__job.workdir, self.__job.jobId)
# Check the job report for any exit code that should replace the res_tuple[0]
res0, exitAcronym, exitMsg = self.getTrfExitInfo(0, self.__job.workdir)
res = (res0, exitMsg, exitMsg)
# Payload error handling
ed = ErrorDiagnosis()
job = ed.interpretPayload(self.__job, res, False, 0,
self.__runCommandList, self.getFailureCode())
if job.result[1] != 0 or job.result[2] != 0:
self.failJob(job.result[1],
job.result[2],
job,
pilotErrorDiag=job.pilotErrorDiag)
self.__job = job
job.jobState = "finished"
job.setState([job.jobState, 0, 0])
job.jobState = job.result
rt = RunJobUtilities.updatePilotServer(job,
self.getPilotServer(),
self.getPilotPort(),
final=True)
tolog("Done")
self.sysExit(self.__job)