def setUp(self):
self.crystal = Crystal({'a': 'T T G A C T C T C T T A A',
'b': Chain('G A G A G T C A'),
'c': 'T T G A C T C T C T T A A',
'd': Chain('G A G A G T C A')
})
def setUp(self):
self.crystal = Crystal({"a": "T T G A C T C T C T T A A",
"b": Chain("G A G A G T C A"),
"c": "T T G A C T C T C T T A A",
"d": Chain("G A G A G T C A")
})
class CrystalTestCase(unittest.TestCase):
def setUp(self):
self.crystal = Crystal({ 'a' : 'T T G A C T C T C T T A A',
'b' : Chain('G A G A G T C A'),
'c' : 'T T G A C T C T C T T A A',
'd' : Chain('G A G A G T C A')
})
def testLen(self):
self.assertEqual(len(self.crystal), len(self.crystal.data))
def testGetItem(self):
self.assertEqual(self.crystal[ 'a' ], self.crystal.data[ 'a' ])
def testSetItem(self):
target = copy.deepcopy(self.crystal)
e = 'MET ALA LEU THR ASN ALA GLN ILE LEU ALA VAL ILE ASP SER'
f = 'LEU GLY GLY GLY LEU GLN GLY THR LEU HIS CYS TYR GLU ILE PRO LEU'
target[ 'e' ] = e
target[ 'f' ] = Chain(f)
self.assertEqual(Chain(e), target[ 'e' ])
self.assertEqual(Chain(f), target[ 'f' ])
def testDelItem(self):
target = copy.deepcopy(self.crystal)
del target[ 'b' ]
self.assertFalse('b' in target.data)
self.assertTrue('a' in target.data)
self.assertTrue('c' in target.data)
def testClear(self):
target = copy.deepcopy(self.crystal)
target.clear()
self.assertEqual(len(target.data), 0)
def testKeys(self):
self.assertEqual(list(self.crystal.keys()),
list(self.crystal.data.keys()))
def testValues(self):
self.assertEqual(list(self.crystal.values()),
list(self.crystal.data.values()))
def testItems(self):
self.assertEqual(list(self.crystal.items()),
list(self.crystal.data.items()))
def testKeys(self):
self.assertEqual(list(self.crystal.keys()),
list(self.crystal.data.keys()))
def testHasKey(self):
self.assertTrue('b' in self.crystal)
self.assertTrue('c' in self.crystal)
self.assertFalse('z' in self.crystal)
class CrystalTestCase(unittest.TestCase):
def setUp(self):
self.crystal = Crystal({'a': 'T T G A C T C T C T T A A',
'b': Chain('G A G A G T C A'),
'c': 'T T G A C T C T C T T A A',
'd': Chain('G A G A G T C A')
})
def testLen(self):
self.assertEqual(len(self.crystal), len(self.crystal.data))
def testGetItem(self):
self.assertEqual(self.crystal['a'], self.crystal.data['a'])
def testSetItem(self):
target = copy.deepcopy(self.crystal)
e = 'MET ALA LEU THR ASN ALA GLN ILE LEU ALA VAL ILE ASP SER'
f = 'LEU GLY GLY GLY LEU GLN GLY THR LEU HIS CYS TYR GLU ILE PRO LEU'
target['e'] = e
target['f'] = Chain(f)
self.assertEqual(Chain(e), target['e'])
self.assertEqual(Chain(f), target['f'])
def testDelItem(self):
target = copy.deepcopy(self.crystal)
del target['b']
self.assertFalse('b' in target.data)
self.assertTrue('a' in target.data)
self.assertTrue('c' in target.data)
def testClear(self):
target = copy.deepcopy(self.crystal)
target.clear()
self.assertEqual(len(target.data), 0)
def testKeys(self):
self.assertEqual(list(self.crystal.keys()),
list(self.crystal.data.keys()))
def testValues(self):
self.assertEqual(list(self.crystal.values()),
list(self.crystal.data.values()))
def testItems(self):
self.assertEqual(list(self.crystal.items()),
list(self.crystal.data.items()))
def testKeys(self):
self.assertEqual(list(self.crystal.keys()),
list(self.crystal.data.keys()))
def testHasKey(self):
self.assertTrue('b' in self.crystal)
self.assertTrue('c' in self.crystal)
self.assertFalse('z' in self.crystal)
class CrystalTestCase(unittest.TestCase):
def setUp(self):
self.crystal = Crystal({
"a": "T T G A C T C T C T T A A",
"b": Chain("G A G A G T C A"),
"c": "T T G A C T C T C T T A A",
"d": Chain("G A G A G T C A")
})
def testLen(self):
self.assertEqual(len(self.crystal), len(self.crystal.data))
def testGetItem(self):
self.assertEqual(self.crystal["a"], self.crystal.data["a"])
def testSetItem(self):
target = copy.deepcopy(self.crystal)
e = "MET ALA LEU THR ASN ALA GLN ILE LEU ALA VAL ILE ASP SER"
f = "LEU GLY GLY GLY LEU GLN GLY THR LEU HIS CYS TYR GLU ILE PRO LEU"
target["e"] = e
target["f"] = Chain(f)
self.assertEqual(Chain(e), target["e"])
self.assertEqual(Chain(f), target["f"])
def testDelItem(self):
target = copy.deepcopy(self.crystal)
del target["b"]
self.assertFalse("b" in target.data)
self.assertIn("a", target.data)
self.assertIn("c", target.data)
def testClear(self):
target = copy.deepcopy(self.crystal)
target.clear()
self.assertEqual(len(target.data), 0)
def testKeys(self):
self.assertEqual(list(self.crystal.keys()),
list(self.crystal.data.keys()))
def testValues(self):
self.assertEqual(list(self.crystal.values()),
list(self.crystal.data.values()))
def testItems(self):
self.assertEqual(list(self.crystal.items()),
list(self.crystal.data.items()))
def testHasKey(self):
self.assertIn("b", self.crystal)
self.assertIn("c", self.crystal)
self.assertFalse("z" in self.crystal)
def setUp(self):
self.crystal = Crystal({ 'a' : 'T T G A C T C T C T T A A',
'b' : Chain('G A G A G T C A'),
'c' : 'T T G A C T C T C T T A A',
'd' : Chain('G A G A G T C A')
})
def __init__(self):
self['Id'] = ''
self['Features'] = ''
self['Name'] = ''
self['Sequence'] = Crystal({})
self['Citation'] = Reference()
self['Space Group'] = ''
self['Cell Constants'] = {}
self['Crystallization Conditions'] = []
self['Refinement'] = ''
self['Coordinates'] = ''