def t_cleaning_features():
"""Test the ability to clean up feature values."""
gb_parser = GenBank.FeatureParser(
feature_cleaner=utils.FeatureValueCleaner())
handle = open(os.path.join("GenBank", "arab1.gb"))
iterator = GenBank.Iterator(handle, gb_parser)
first_record = next(iterator)
# test for cleaning of translation
translation_feature = first_record.features[1]
test_trans = translation_feature.qualifiers["translation"][0]
assert " " not in test_trans, "Did not clean spaces out of the translation"
assert "\012" not in test_trans, "Did not clean newlines out of the translation"
handle.close()
def t_cleaning_features():
"""Test the ability to clean up feature values.
"""
parser = GenBank.FeatureParser(feature_cleaner = \
utils.FeatureValueCleaner())
handle = open(os.path.join("GenBank", "arab1.gb"))
iterator = GenBank.Iterator(handle, parser)
first_record = iterator.next()
# test for cleaning of translation
translation_feature = first_record.features[1]
test_trans = translation_feature.qualifiers["translation"][0]
assert test_trans.find(" ") == -1, \
"Did not clean spaces out of the translation"
assert test_trans.find("\012") == -1, \
"Did not clean newlines out of the translation"
