def fillInUI(self, parent):
self.default_color = (0, 0, 0.8, 1)
t = parent.winfo_toplevel()
self.toplevel_widget = t
t.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
mmf = Tkinter.Frame(parent)
mmf.grid(row=row, column=0, sticky='w')
row = row + 1
mb = Hybrid.Option_Menu(mmf, 'Use mouse ', 'button 1', 'button 2',
'button 3', 'ctrl button 1', 'ctrl button 2',
'ctrl button 3')
mb.variable.set('ctrl button 3')
mb.frame.grid(row=0, column=0, sticky='w')
mb.add_callback(self.bind_mouse_button_cb)
self.mouse_button = mb
mbl = Tkinter.Label(mmf, text=' to choose blobs')
mbl.grid(row=0, column=1, sticky='w')
crf = Tkinter.Frame(parent)
crf.grid(row=row, column=0, sticky='ew')
crf.columnconfigure(1, weight=1)
row = row + 1
cl = Tkinter.Label(crf, text='Color blob ')
cl.grid(row=0, column=0, sticky='w')
from CGLtk.color import ColorWell
sc = ColorWell.ColorWell(crf, color=self.default_color)
sc.grid(row=0, column=1, sticky='w')
self.blob_color = sc
msg = Tkinter.Label(parent, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
callbacks = (self.mouse_down_cb, self.mouse_drag_cb, self.mouse_up_cb)
icon = self.mouse_mode_icon('pickblob.gif')
from chimera import mousemodes
mousemodes.addFunction('pick blobs', callbacks, icon)
self.bind_mouse_button_cb()
def fillInUI(self, parent):
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
from CGLtk import Hybrid
self.NORMAL_MOVEMENT = 'Normal'
self.MOVE_SELECTION = 'Move selection'
self.MOVE_MOLECULE = 'Move molecule'
self.MOVE_CHAIN = 'Move chain'
self.MOVE_SECONDARY_STRUCTURE = 'Move helix, strand, or turn'
modes = (self.NORMAL_MOVEMENT, self.MOVE_SELECTION, self.MOVE_MOLECULE,
self.MOVE_CHAIN, self.MOVE_SECONDARY_STRUCTURE)
mm = Hybrid.Option_Menu(parent, 'Movement mouse mode ', *modes)
mm.frame.grid(row=row, column=0, sticky='w')
self.mode = mm.variable
mm.add_callback(self.mode_changed_cb)
def fillInUI(self, parent):
self.last_xy = None
import Tkinter
from CGLtk import Hybrid
parent.columnconfigure(0, weight = 1)
row = 0
cr = Hybrid.Checkbutton(parent, 'Constrain mouse rotations', 0)
cr.button.grid(row = row, column = 0, sticky = 'w')
row = row + 1
self.constrain_rotations = cr.variable
cr.callback(self.constrain_rotation_cb)
raf = Tkinter.Frame(parent)
raf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
ra = Hybrid.Entry(raf, 'Axis ', 8, '0 0 1')
ra.frame.grid(row = 0, column = 0, sticky = 'w')
self.rot_axis = ra.variable
rotx_cb = lambda v=self.rot_axis: v.set('1 0 0')
roty_cb = lambda v=self.rot_axis: v.set('0 1 0')
rotz_cb = lambda v=self.rot_axis: v.set('0 0 1')
rab = Hybrid.Button_Row(raf, ' ',
(('x', rotx_cb),
('y', roty_cb),
('z', rotz_cb)))
rab.frame.grid(row = 0, column = 1, sticky = 'w')
rof = Tkinter.Frame(parent)
rof.grid(row = row, column = 0, sticky = 'w')
row = row + 1
ro = Hybrid.Entry(rof, 'Origin ', 8, '0 0 0')
ro.frame.grid(row = 0, column = 0, sticky = 'w')
self.rot_origin = ro.variable
zorigin_cb = lambda v=self.rot_origin: v.set('0 0 0')
rob = Hybrid.Button_Row(rof, ' ',
(('zero', zorigin_cb),
('center', self.set_rotation_origin_at_center),))
rob.frame.grid(row = 0, column = 1, sticky = 'w')
sep = Tkinter.Frame(parent, relief = Tkinter.GROOVE,
borderwidth=1, height=2)
sep.grid(row = row, column = 0, sticky = 'ew', pady = 10)
row = row + 1
tr = Hybrid.Checkbutton(parent, 'Constrain mouse translations', 0)
tr.button.grid(row = row, column = 0, sticky = 'w')
row = row + 1
self.constrain_translations = tr.variable
tr.callback(self.constrain_translation_cb)
taf = Tkinter.Frame(parent)
taf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
ta = Hybrid.Entry(taf, 'Axis ', 8, '0 0 1')
ta.frame.grid(row = 0, column = 0, sticky = 'w')
self.trans_axis = ta.variable
tx_cb = lambda v=self.trans_axis: v.set('1 0 0')
ty_cb = lambda v=self.trans_axis: v.set('0 1 0')
tz_cb = lambda v=self.trans_axis: v.set('0 0 1')
tab = Hybrid.Button_Row(taf, ' ',
(('x', tx_cb),
('y', ty_cb),
('z', tz_cb)))
tab.frame.grid(row = 0, column = 1, sticky = 'w')
ttf = Tkinter.Frame(parent)
ttf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
tt = Hybrid.Option_Menu(ttf, 'Allow only ',
'parallel', 'perpendicular')
tt.variable.set('parallel')
tt.frame.grid(row = 0, column = 0, sticky = 'w')
self.translation_type = tt.variable
tl = Tkinter.Label(ttf, text = ' motion')
tl.grid(row = 0, column = 1, sticky = 'w')
sep = Tkinter.Frame(parent, relief = Tkinter.GROOVE,
borderwidth=1, height=2)
sep.grid(row = row, column = 0, sticky = 'ew', pady = 10)
row = row + 1
rl = Tkinter.Label(parent, text = 'Axis and origin relative to')
rl.grid(row = row, column = 0, sticky = 'w')
row = row + 1
mmf = Tkinter.Frame(parent)
mmf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
mm = Hybrid.Option_Menu(mmf, 'model ')
mm.frame.grid(row = 0, column = 0, sticky = 'w')
self.model_menu = mm
self.model_name = mm.variable
from chimera import openModels
openModels.addAddHandler(self.model_list_changed_cb, None)
openModels.addRemoveHandler(self.model_list_changed_cb, None)
ml = Tkinter.Label(mmf, text = ' coordinates.')
ml.grid(row = 0, column = 1, sticky = 'w')
self.update_model_menu()
self.register_mouse_modes()
def fillInUI(self, parent):
self.phantom_device = None
self.cursor_model = None
self.phantom_handler = None
self.gradient_force = None
self.phantom_button_down = 0
self.last_phantom_transform = None
self.last_roll = None
self.key_callback_registered = None
self.mode = 'cursor' # 'cursor', 'move models', 'zoom',
# 'contour level', 'move marker'
self.command_list_shown = False
import Tkinter
from CGLtk import Hybrid
row = 0
po = Hybrid.Checkbutton_Row(parent, 'Enable',
('cursor', 'forces', 'key commands'))
po.frame.grid(row=row, column=0, sticky='w')
row = row + 1
self.phantom_on, self.force_field, self.commands = \
[c.variable for c in po.checkbuttons]
self.phantom_on.add_callback(self.settings_changed_cb)
self.force_field.add_callback(self.settings_changed_cb)
self.commands.add_callback(self.toggle_commands_cb)
cf = Tkinter.Frame(parent)
cf.grid(row=row, column=0, sticky='w')
row = row + 1
cs = Hybrid.Option_Menu(cf, 'Cursor shape ', 'cross', 'jack', 'sphere',
'volume crosshair')
cs.frame.grid(row=0, column=0, sticky='nw')
row = row + 1
cs.variable.set('jack')
cs.add_callback(self.settings_changed_cb)
self.cursor_shape = cs.variable
from VolumeViewer import active_volume
v = active_volume()
if v:
csize = '%.3g' % (10 * max(v.data.step))
else:
csize = '1'
cs = Hybrid.Entry(cf, ' size ', 5, csize)
cs.frame.grid(row=0, column=1, sticky='w')
cs.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.cursor_size = cs.variable
cl = Tkinter.Label(cf, text=' color ')
cl.grid(row=0, column=2, sticky='w')
from CGLtk.color import ColorWell
cc = ColorWell.ColorWell(cf, callback=self.settings_changed_cb)
self.cursor_color = cc
cc.showColor((0, 0.5, 1), doCallback=0)
cc.grid(row=0, column=3, sticky='w')
sp = Hybrid.Popup_Panel(parent)
spf = sp.frame
spf.grid(row=row, column=0, sticky='news')
spf.grid_remove()
spf.columnconfigure(0, weight=1)
self.settings_panel = sp.panel_shown_variable
row += 1
srow = 0
cb = sp.make_close_button(spf)
cb.grid(row=srow, column=1, sticky='e')
pr = Hybrid.Entry(spf, 'Phantom physical range (mm) ', 5, '200')
pr.frame.grid(row=srow, column=0, sticky='w')
srow += 1
pr.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.phantom_range = pr.variable
mf = Hybrid.Entry(spf, 'Maximum force (lbs) ', 5, '.4')
mf.frame.grid(row=srow, column=0, sticky='w')
srow += 1
mf.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.maximum_force = mf.variable
af = Hybrid.Checkbutton(spf, 'Auto-adjust force constant', 1)
af.button.grid(row=srow, column=0, sticky='w')
srow += 1
self.auto_adjust_force_constant = af.variable
self.force_field.add_callback(self.settings_changed_cb)
fc = Hybrid.Logarithmic_Scale(spf, 'Force constant ', .0001, 100, 1,
'%.2g')
fc.frame.grid(row=srow, column=0, sticky='ew')
srow += 1
fc.set_value(1)
fc.callback(self.force_constant_changed_cb)
fc.entry.bind('<KeyPress-Return>', self.force_constant_changed_cb)
self.force_constant = fc
vf = Tkinter.Frame(spf)
vf.grid(row=srow, column=0, sticky='ew')
srow += 1
self.label_row(vf, 0, ('', 'x', 'y', 'z'))
pl = self.label_row(vf, 1, ('Phantom position', '', '', ''))
self.phantom_position_labels = pl[1:]
cpl = self.label_row(vf, 2, ('Chimera position', '', '', ''))
self.chimera_position_labels = cpl[1:]
vpl = self.label_row(vf, 3, ('Volume position', '', '', ''))
self.volume_position_labels = vpl[1:]
vil = self.label_row(vf, 4, ('Volume index', '', '', ''))
self.volume_index_labels = vil[1:]
gl = self.label_row(vf, 5, ('Gradient', '', '', ''))
self.gradient_labels = gl[1:]
fl = self.label_row(vf, 6, ('Force', '', '', ''))
self.force_labels = fl[1:]
dvl = self.label_row(vf, 7, ('Data value', ''))
self.data_value_label = dvl[1]
def fillInUI(self, parent):
self.default_radius = 1
self.default_color = (1,0.6,0.8,.5) # Pink eraser
t = parent.winfo_toplevel()
self.toplevel_widget = t
t.withdraw()
parent.columnconfigure(0, weight = 1)
row = 0
import Tkinter
from CGLtk import Hybrid
sh = Hybrid.Checkbutton(parent, 'Show volume-erasing sphere ', True)
sh.button.grid(row = row, column = 0, sticky = 'w')
row = row + 1
self.show_sphere_var = sh.variable
sh.callback(self.show_sphere_cb)
crf = Tkinter.Frame(parent)
crf.grid(row = row, column = 0, sticky = 'ew')
crf.columnconfigure(2, weight = 1)
row = row + 1
cl = Tkinter.Label(crf, text = 'Color')
cl.grid(row = 0, column = 0, sticky = 'w')
from CGLtk.color import ColorWell
sc = ColorWell.ColorWell(crf, color = self.default_color,
callback = self.change_sphere_color_cb)
sc.grid(row = 0, column = 1, sticky = 'w')
self.sphere_color = sc
rs = Hybrid.Scale(crf, ' Radius ', 0, 30, .1, 2)
rs.frame.grid(row = 0, column = 2, sticky = 'ew')
row = row + 1
rs.callback(self.change_radius_cb)
rs.entry.bind('<KeyPress-Return>', self.change_radius_cb)
self.sphere_radius_scale = rs
mmf = Tkinter.Frame(parent)
mmf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
mb = Hybrid.Option_Menu(mmf, 'Use mouse ',
'button 1', 'button 2', 'button 3',
'ctrl button 1', 'ctrl button 2', 'ctrl button 3')
mb.variable.set('button 2')
mb.frame.grid(row = 0, column = 0, sticky = 'w')
mb.add_callback(self.bind_mouse_button_cb)
self.mouse_button = mb
mbl = Tkinter.Label(mmf, text = ' to move sphere')
mbl.grid(row = 0, column = 1, sticky = 'w')
ka = Tkinter.Label(parent, text = 'Erase using keyboard accelerator "es".')
ka.grid(row = row, column = 0, sticky = 'w')
row = row + 1
from Accelerators import add_accelerator
add_accelerator('es', 'Erase volume data inside sphere', self.Erase)
add_accelerator('eo', 'Erase volume data outside sphere',
self.erase_outside_sphere)
def fillInUI(self, parent):
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
from chimera import widgets
from Surface import surface_models
sm = widgets.ModelOptionMenu(parent,
labelpos='w',
label_text='Surface ',
listFunc=surface_models,
command=self.surface_menu_cb)
sm.grid(row=row, column=0, sticky='w')
self.surface_menu = sm
row += 1
ls = Hybrid.Logarithmic_Scale(parent,
'Size ',
1,
1000,
100,
entry_width=8)
ls.frame.grid(row=row, column=0, sticky='ew')
row += 1
ls.callback(self.limit_changed_cb)
ls.entry.bind('<KeyPress-Return>', self.limit_changed_cb)
self.limit = ls
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='e')
mo = Hybrid.Option_Menu(opf, 'Hide small blobs based on ', 'size',
'rank', 'volume')
mo.frame.grid(row=orow, column=0, sticky='w')
row += 1
mo.add_callback(self.method_changed_cb)
self.method = mo.variable
# Specify a label width so dialog is not resized for long messages.
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
self.surface_menu_cb() # Set slider for current surface
def fillInUI(self, parent):
self.molecules = []
self.add_model_handler = None
self.remove_model_handler = None
import Tkinter
from CGLtk import Hybrid
row = 0
mm = Hybrid.Option_Menu(parent, 'Molecule: ')
mm.frame.grid(row=row, column=0, sticky='w')
row = row + 1
mm.add_callback(self.molecule_menu_cb)
self.molecule_menu = mm
labels = []
for text in (
'Space group: ',
'Cell size: ',
'Cell angles: ',
'Number of SMTRY matrices: ',
'Number of space group symmetries: ',
'Number of MTRIX matrices: ',
):
lbl = Tkinter.Label(parent, text=text)
lbl.grid(row=row, column=0, sticky='w')
row = row + 1
labels.append(lbl)
(
self.space_group,
self.cell_size,
self.cell_angles,
self.smtry_count,
self.sg_smtry_count,
self.mtrix_count,
) = labels
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='e')
usr = Hybrid.Checkbutton(opf, 'Use SMTRY records in PDB header', True)
usr.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.use_smtry_records = usr.variable
ucr = Hybrid.Checkbutton(
opf, 'Use CRYST1 record if SMTRY records are missing', True)
ucr.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.use_cryst1_smtry = ucr.variable
umr = Hybrid.Checkbutton(
opf, 'Use MTRIX records for non-crystallographic symmetry', True)
umr.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.use_mtrix_records = umr.variable
co = Hybrid.Entry(opf, 'Cell origin ', 12, '0 0 0')
co.frame.grid(row=orow, column=0, sticky='w')
orow += 1
self.grid_orig = co.variable
co.entry.bind('<KeyPress-Return>', self.origin_change_cb)
nc = Hybrid.Entry(opf, 'Number of cells ', 12, '1 1 1')
nc.frame.grid(row=orow, column=0, sticky='w')
orow += 1
self.ncells = nc.variable
nc.entry.bind('<KeyPress-Return>', self.make_unit_cell_cb)
br = Hybrid.Button_Row(parent, '', (
('Make copies', self.make_unit_cell_cb),
('Outline', self.show_outline_cb),
('Delete copies', self.close_unit_cell_cb),
))
br.frame.grid(row=row, column=0, sticky='e')
row = row + 1
def fillInUI(self, parent):
self.default_radius = 100
self.surface_model = None
self.surface_piece = None
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
# Radius
rs = Hybrid.Scale(parent, 'Radius ', 1, 1000, 0.01,
self.default_radius)
rs.frame.grid(row=row, column=0, sticky='ew')
row = row + 1
rs.callback(self.radius_changed_cb)
rs.entry.bind('<KeyPress-Return>', self.radius_changed_cb)
self.radius = rs
# Interpolation factor between icosahedron and sphere
sf = Hybrid.Scale(parent, 'Sphere factor ', 0, 1, .01, 0)
sf.frame.grid(row=row, column=0, sticky='ew')
row = row + 1
sf.callback(self.sphere_factor_changed_cb)
sf.entry.bind('<KeyPress-Return>', self.sphere_factor_changed_cb)
self.sphere_factor = sf
# Orientation menu
self.orient_222 = 'xyz 2-fold axes'
self.orient_222r = 'xyz 2-fold axes, alt'
self.orient_2n3 = 'x 2-fold, z 3-fold'
self.orient_2n3r = 'x 2-fold, z 3-fold, alt'
self.orient_2n5 = 'x 2-fold, z 5-fold'
self.orient_2n5r = 'x 2-fold, z 5-fold, alt'
self.orient_n25 = 'y 2-fold, z 5-fold'
self.orient_n25r = 'y 2-fold, z 5-fold, alt'
io = Hybrid.Option_Menu(parent, 'Orientation ', self.orient_222,
self.orient_222r, self.orient_2n3,
self.orient_2n3r, self.orient_2n5,
self.orient_2n5r, self.orient_n25,
self.orient_n25r)
io.frame.grid(row=row, column=0, sticky='w')
io.add_callback(self.show_cb)
row = row + 1
self.orientation = io.variable
# Subdivision factor
sf = Tkinter.Frame(parent)
sf.grid(row=row, column=0, sticky='w')
row = row + 1
sb = Hybrid.Entry(sf, 'Subdivision factor ', 5, '1')
sb.frame.grid(row=0, column=0, sticky='w')
self.subdivision_factor = sb.variable
sb.entry.bind('<KeyPress-Return>', self.show_cb)
sp = Tkinter.Label(sf, text='')
sp.grid(row=0, column=1, sticky='w')
self.subdivision_spacing = sp
# Surface style: filled, mesh
st = Hybrid.Radiobutton_Row(parent, 'Surface style: ',
('solid', 'mesh'), self.style_changed_cb)
st.frame.grid(row=row, column=0, sticky='w')
st.variable.set('mesh', invoke_callbacks=False)
row = row + 1
self.surface_style = st.variable
# Color
cf = Tkinter.Frame(parent)
cf.grid(row=row, column=0, sticky='w')
row = row + 1
cl = Tkinter.Label(cf, text='Color')
cl.grid(row=0, column=0, sticky='w')
initial_color = (.7, .7, .7, 1)
from CGLtk.color import ColorWell
cw = ColorWell.ColorWell(cf, callback=self.color_changed_cb)
cw.showColor(initial_color)
cw.grid(row=0, column=1, sticky='w')
self.color = cw
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
import SimpleSession
chimera.triggers.addHandler(SimpleSession.SAVE_SESSION,
self.save_session_cb, None)
def fillInUI(self, parent):
self.filter_widgets = fw = []
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1) # Allow scalebar to expand.
row = 0
import Tkinter
from CGLtk import Hybrid
self.gaussian = 'Gaussian'
self.median = 'Median 3x3x3'
self.bin = 'Bin'
self.laplacian = 'Laplacian'
self.fourier = 'Fourier Transform'
self.scale = 'Scale'
ft = Hybrid.Option_Menu(parent, 'Filter type:',
self.gaussian, self.median, self.bin,
self.laplacian, self.fourier, self.scale)
ft.button.configure(indicatoron = False)
ft.frame.grid(row = row, column = 0, sticky = 'w')
row += 1
self.filter_type = ft.variable
ft.add_callback(self.filter_type_changed_cb)
ws = Hybrid.Scale(parent, 'Width ', 1.0, 10.0, 0.0, 1.0)
ws.frame.grid(row = row, column = 0, sticky = 'ew')
row += 1
ws.callback(self.filter_parameter_changed_cb)
ws.entry.bind('<KeyPress-Return>', self.filter_cb)
self.sdev = ws
Hybrid.Balloon_Help(ws.label, 'Width is one standard deviation.',
delay = 0.5)
fw.append((self.gaussian, ws.frame))
mi = Hybrid.Scale(parent, 'Iterations ', 0, 5, 1, 1, 2)
mi.frame.grid(row = row, column = 0, sticky = 'ew')
row += 1
mi.callback(self.filter_parameter_changed_cb)
mi.entry.bind('<KeyPress-Return>', self.filter_cb)
self.median_iterations = mi
fw.append((self.median, mi.frame))
bs = Hybrid.Entry(parent, 'Bin size', 5, '2')
bs.frame.grid(row = row, column = 0, sticky = 'w')
row += 1
self.binsize = bs.variable
bs.entry.bind('<KeyPress-Return>', self.filter_cb)
fw.append((self.bin, bs.frame))
sf = Tkinter.Frame(parent)
sf.grid(row = row, column = 0, sticky = 'w')
row += 1
fw.append((self.scale, sf))
sh = Hybrid.Entry(sf, 'Shift', 5, '0')
sh.frame.grid(row = 0, column = 0, sticky = 'w')
self.shift = sh.variable
sh.entry.bind('<KeyPress-Return>', self.filter_cb)
sc = Hybrid.Entry(sf, 'Scale', 5, '1')
sc.frame.grid(row = 0, column = 1, sticky = 'w')
self.scale_factor = sc.variable
sc.entry.bind('<KeyPress-Return>', self.filter_cb)
vt = Hybrid.Option_Menu(sf, 'Value type', 'same', 'int8', 'uint8', 'int16', 'uint16', 'int32', 'uint32', 'float32', 'float64')
vt.frame.grid(row = 0, column = 2, sticky = 'w')
self.value_type = vt.variable
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row = row, column = 0, sticky = 'news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row = orow, column = 1, sticky = 'e')
sr = Hybrid.Checkbutton(opf, 'Displayed subregion only', True)
sr.button.grid(row = orow, column = 0, sticky = 'w')
orow += 1
self.use_subregion = sr.variable
ss = Hybrid.Checkbutton(opf, 'Displayed subsampling only', False)
ss.button.grid(row = orow, column = 0, sticky = 'w')
orow += 1
self.use_step = ss.variable
ta = Hybrid.Checkbutton(opf, 'Adjust threshold for constant volume', True)
ta.button.grid(row = orow, column = 0, sticky = 'w')
orow += 1
self.adjust_thresholds = ta.variable
iu = Hybrid.Checkbutton(opf, 'Immediate update', False)
iu.button.grid(row = orow, column = 0, sticky = 'w')
orow += 1
self.immediate_update = iu.variable
self.filter_type_changed_cb()
self.set_scale_range(initial = True)
def fillInUI(self, parent):
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
from chimera import widgets
from SurfaceColor import colorable_surface_models
sm = widgets.ModelOptionMenu(parent,
labelpos='w',
label_text='Color surface ',
listFunc=colorable_surface_models,
command=self.surface_menu_cb)
sm.grid(row=row, column=0, sticky='w')
self.surface_menu = sm
row = row + 1
from SurfaceColor import coloring_methods
methods = [cm.menu_name for cm in coloring_methods]
csm = Hybrid.Option_Menu(parent, 'by ', *methods)
csm.frame.grid(row=row, column=0, sticky='w')
self.color_source_menu = csm.variable
csm.add_callback(self.color_source_changed_cb)
row = row + 1
from VolumeViewer import Volume_Menu
vm = Volume_Menu(parent, 'file', open_button='browse...')
vm.frame.grid(row=row, column=0, sticky='w')
self.volume_menu = vm
row += 1
oaf = Tkinter.Frame(parent)
oaf.grid(row=row, column=0, sticky='w')
row = row + 1
self.origin_axis_frame = oaf
oe = Hybrid.Entry(oaf, 'origin ', 8, '0 0 0')
oe.frame.grid(row=0, column=0, sticky='w')
self.origin_variable = oe.variable
oe.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
cb = Tkinter.Button(oaf, text='center', command=self.set_center_cb)
cb.grid(row=0, column=1, sticky='w')
ae = Hybrid.Entry(oaf, 'axis ', 8, '0 0 1')
ae.frame.grid(row=0, column=2, sticky='w')
self.axis_frame = ae.frame
self.axis_variable = ae.variable
ae.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
cg = Colorwell_GUI(parent, 5, self.settings_changed_cb)
cg.set_color_palette('rainbow')
self.colormap_gui = cg
self.colormap_gui.frame.grid(row=row, column=0, sticky='w')
row = row + 1
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='ne')
cf = Tkinter.Frame(opf)
cf.grid(row=orow, column=0, sticky='w')
orow += 1
color_counts = ('2', '3', '5', '10', '15', '20')
cc = Hybrid.Option_Menu(cf, 'Colors ', *color_counts)
cc.frame.grid(row=0, column=0, sticky='w')
self.color_count = cc.variable
self.color_count.set('5')
cc.add_callback(self.change_color_count_cb)
cpat = ('Rainbow', 'Gray', 'Red-Blue', 'Cyan-Maroon')
cp = Hybrid.Option_Menu(cf, 'Palette', *cpat)
cp.frame.grid(row=0, column=1, sticky='w')
self.palette = cp.variable
cp.add_callback(self.change_color_palette_cb)
rc = Tkinter.Button(cf, text='Reverse', command=self.reverse_colors_cb)
rc.grid(row=0, column=2, sticky='w')
ckb = Tkinter.Button(opf,
text="Create color key",
command=self.colormap_gui.color_key_cb)
ckb.grid(row=orow, column=0, sticky='w')
orow += 1
dcf = Tkinter.Frame(opf)
dcf.grid(row=orow, column=0, sticky='w')
orow += 1
db = Tkinter.Button(dcf,
text='Set',
command=self.show_default_colormap_values)
db.grid(row=0, column=0, sticky='w')
dt = Tkinter.Label(dcf, text=' full range of surface values')
dt.grid(row=0, column=1, sticky='w')
so = Hybrid.Entry(opf, 'Surface offset ', 5, '1.4')
so.frame.grid(row=orow, column=0, sticky='w')
self.surface_offset = so.variable
self.surface_offset_frame = so.frame
orow += 1
so.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
ocf = Tkinter.Frame(opf)
ocf.grid(row=orow, column=0, sticky='w')
orow += 1
self.outside_color_frame = ocf
ocl = Tkinter.Label(ocf, text='Color outside volume')
ocl.grid(row=0, column=0, sticky='w')
outside_color = (.5, .5, .5, 1)
from CGLtk.color import ColorWell
cw = ColorWell.ColorWell(ocf)
cw.showColor(outside_color)
cw.grid(row=0, column=1, sticky='w')
self.outside_color = cw
co = Hybrid.Checkbutton(opf, 'Only color sliced surface face', 0)
co.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.color_caps_only = co.variable
ppc = Hybrid.Checkbutton(opf, 'Per-pixel coloring', False)
ppc.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.per_pixel_color = ppc.variable
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
# Show current coloring if one already exists from session restore.
self.surface_menu_cb()
# Show axix, origin, volume widgets if appropriate.
self.color_source_changed_cb()
