def _runFull(self):
a=CLT()
a.path_in= self.path_in
a.path_out = self.path_out
a.blockSize = self.blockSize
a.helo = 30
a.sigmaSmooth = self.sigmaSmooth
a.thresMembra = self.thresMembra
a.sizeFilter = self.sizeF
a.verbose = 1
a.run()
print a.getScore()
self.res=h5py.File(a.path_out[0])[a.path_out[1]+"/axons"][::]
def _runGapClosing(self):
x0,x1,y0,y1,z0,z1=self.Range
a=CLT()
a.path_in= self.path_in
a.path_out = self.path_out
a.Sub_Volume = [[x0,x1],[y0,y1],[z0,z1]]
a.blockSize = self.blockSize
a.helo = self.helo
a.sigmaSmooth = self.sigmaSmooth
a.thresMembra = self.thresMembra
a.sizeFilter = self.sizeF
a.verbose = 1
a.run()
self.res=h5py.File(a.path_out[0])[a.path_out[1]+"/axons"][::]
