def __init__(self, name, **kw):
Cell.__init__(self, name)
self.cellDim = kw.get('dimension', 3) # dimension of finite element cell
self.degree = kw.get('degree', 1) # degree of finite-element cell
self.order = kw.get('order', -1) # order of finite-element cell
self.configure()
return
def __init__(self, drug=True):
""" Object initialization.
Keyword arguments:
drug -- A boolean flag that is used to decide whether 5-HT is
inserted in the model or not (default = True).
"""
Cell.__init__(self)
# Define parameters
self._drug = drug
self.synapses = []
self._nNodes = 41
self._nDendrites = 12
self._diamAxon = 8.74
# dendrite diameters scaled for the rat
self._diamDend = [
1.5277386855568675e+01, 1.7434194411648960e+01,
1.9770735930735935e+01, 1.7973396300669030e+01,
1.7613928374655650e+01, 1.6355790633608819e+01,
1.4378717040535225e+01, 1.2940845336481701e+01,
1.0424569854388038e+01, 8.5373632428177881e+00,
6.7400236127508864e+00, 3.1453443526170801e+00
]
# dendrite length
self._lengthDend = [
5.0e+02, 5.0e+02, 7.0e+02, 9.0e+02, 5.0e+02, 4.0e+02, 6.0e+02,
4.0e+02, 5.0e+02, 5.0e+02, 5.0e+02, 5.0e+02
]
self._create_sections()
self._define_biophysics()
self._build_topology()
def __init__(self, name, **kw):
Cell.__init__(self, name)
self.cellDim = kw.get('dimension',
3) # dimension of finite element cell
self.degree = kw.get('degree', 1) # degree of finite-element cell
self.order = kw.get('order', -1) # order of finite-element cell
self.configure()
return
def __init__(self, x, y, state, cx, cy):
Cell.__init__(self, x, y, state)
pygame.sprite.Sprite.__init__(self)
self.image = pygame.Surface((self.size, self.size))
self.rect = self.image.get_rect()
self.cx = cx
self.cy = cy
self._draw()
def __init__(self):
""" Object initialization. """
Cell.__init__(self)
#Create IntFire4
self.cell = h.IntFire4()
self.cell.taue = 0.5
self.cell.taui1 = 5
self.cell.taui2 = 10
self.cell.taum = 30 #0.2 nF divided g 20 nS
def __init__(self, x, y, pasX, pasY):
"""
Construit un agent simple, pour une bille.
@param x: position en x
@param y: position en y
@param pasX: le déplacement en x
@param pasY: le déplacement en y
"""
Cell.__init__(self,x,y)
self.pasX = int(pasX)
self.pasY = int(pasY)
self.color = choice(['blue', 'red', 'green', 'magenta'])
def __init__(self):
""" Object initialization. """
Cell.__init__(self)
noisePerc = 0.05
#Create IntFire4
self.cell = h.IntFireMn()
self.cell.taue = 0.25
self.cell.taui1 = 2
self.cell.taui2 = 4.5
self.cell.taum = rnd.normalvariate(6, 6 * noisePerc)
if self.cell.taum <= self.cell.taui2:
self.cell.taum = self.cell.taui2 + 0.25
self.cell.refrac = rnd.normalvariate(20, 20 * noisePerc) # mean 50Hz
def __init__(self, delay):
""" Object initialization.
Keyword arguments:
delay -- time delay in ms needed by a spike to travel the whole fiber
"""
Cell.__init__(self)
self._debug = False
#Initialise cell parameters
self._set_delay(delay)
self.maxFiringRate = 200 # This should be lower than the frequency allowed by the refractory period
self._maxSensorySpikesXtime = int(
float(self._delay) / 1000. * float(self.maxFiringRate) + 2)
self._maxEesSpikesXtime = int(
float(self._delay) / 1000. *
float(self.__class__.__maxEesFrequency) + 2)
#Mean refractory period of 1.6 ms - 625 Hz
noisePerc = 0.1
self._refractoryPeriod = rnd.normalvariate(1.6, 1.6 * noisePerc)
if self._refractoryPeriod > 1000. / self.maxFiringRate:
self._refractoryPeriod = 1000. / self.maxFiringRate
print "Warning: refractory period bigger than period between 2 natural pulses"
#Position along the fiber recruited by the stimulation
self._stimPosition = self._delay - 0.5
self.initialise()
#Create an ARTIFICIAL_CELL Neuron mechanism that will be the source of a netCon object.
#This will be used to comunicate the APs to target cells
self.cell = h.AfferentFiber()
#Create a netcon to make the fiber fire
self._fire = h.NetCon(None, self.cell)
# Boolean flag to record a segment of the fiber over time
self._record = False
def __init__(self, width, height, color, grid):
Cell.__init__(self, width, height, grid.margin)
self.color = color
self.grid = grid
self.setup()
def __init__(self,width,height,color,grid):
Cell.__init__(self,width,height,grid.margin)
self.color = color
self.grid = grid
self.setup()
def __init__(self, position=None):
Cell.__init__(self, position)
def __init__(self, name, **kw):
Cell.__init__(self, name)
self.degree = kw.get('degree', 1)
self.order = kw.get('order', -1)
self.configure()
return
def __init__(self, name, **kw):
Cell.__init__(self, name)
self.degree = kw.get('degree', 1)
self.order = kw.get('order', -1)
self.configure()
return
def __init__(self, rigidBody, replacingCell, x, y):
Cell.__init__(self, x, y)
self.replacingCell = replacingCell
