def setup(sim):
# Set biophysics, signalling, and regulation models
biophys = CLBacterium(sim, max_cells=max_cells, jitter_z=False)
integ = CLEulerIntegrator(sim, 2, max_cells)
# use this file for reg too
regul = ModuleRegulator(sim)
# Only biophys and regulation
sim.init(biophys, regul, None, integ)
# Specify the initial cell and its location in the simulation
sim.addCell(cellType=0, pos=(0, 0, 0))
# Add some objects to draw the models
therenderer = Renderers.GLBacteriumRenderer(sim)
sim.addRenderer(therenderer)
sim.pickleSteps = 20
def setup(sim):
# Set biophysics, signalling, and regulation models
biophys = CLBacterium(sim, jitter_z=False)
integ = CLEulerIntegrator(sim, 2, max_cells)
regul = ModuleRegulator(sim, sim.moduleName)
# Only biophys and regulation
sim.init(biophys, regul, None, integ)
# Specify the initial cell and its location in the simulation
sim.addCell(cellType=0, pos=(0, 0, 0))
if sim.is_gui:
# Add some objects to draw the models
from CellModeller.GUI import Renderers
therenderer = Renderers.GLBacteriumRenderer(sim)
sim.addRenderer(therenderer)
sim.pickleSteps = 10