예제 #1
0
파일: DefaultDriver.py 프로젝트: hainm/xia2
  def __init__(self):
    '''Initialise the Driver instance.'''
    super(DefaultDriver, self).__init__()

    # settings for the job to run
    self._executable = None

    # command_line should be a list of separate elements
    # note well that this is different to how things worked before
    self._command_line = []
    self._working_directory = os.getcwd()
    self._working_environment = { }
    self._working_environment_exclusive = []

    # presuming here that the number of input commands is
    # usually small
    self._standard_input_records = []

    # this will be bigger but that is ok...
    self._standard_output_records = []

    # optional - possibly useful if using a batch submission
    # system or wanting to describe better what the job is doing
    self._input_files = []
    self._output_files = []

    self._scratch_directories = []

    self._log_file = None
    self._log_file_name = None

    self._task = None

    self._finished = False

    self._name = generate_random_name()

    # this will be assigned if auto-logfiler (c/f xia2.lib.guff)
    # note that there are no guidelines for this...!
    # bug 2690... xia2 process id is name...

    self._xpid = 0

    self._cpu_threads = 1

    return
예제 #2
0
    def __init__(self):
        '''Initialise the Driver instance.'''

        # settings for the job to run
        self._executable = None

        # command_line should be a list of separate elements
        # note well that this is different to how things worked before
        self._command_line = []
        self._working_directory = os.getcwd()
        self._working_environment = {}
        self._working_environment_exclusive = []

        # presuming here that the number of input commands is
        # usually small
        self._standard_input_records = []

        # this will be bigger but that is ok...
        self._standard_output_records = []

        # optional - possibly useful if using a batch submission
        # system or wanting to describe better what the job is doing
        self._input_files = []
        self._output_files = []

        self._scratch_directories = []

        self._log_file = None

        self._task = None

        self._finished = False

        self._name = generate_random_name()

        # this will be assigned if auto-logfiler (c/f lib.guff)
        # note that there are no guidelines for this...!
        # bug 2690... xia2 process id is name...

        self._xpid = 0

        return
예제 #3
0
파일: DefaultDriver.py 프로젝트: xia2/xia2
  def reset(self):
    '''Reset the output things.'''

    self._standard_input_records = []
    self._standard_output_records = []

    self._command_line = []

    # optional - possibly useful if using a batch submission
    # system or wanting to describe better what the job is doing

    self._input_files = []
    self._output_files = []
    self._scratch_directories = []
    if self._log_file is not None:
      self._log_file.flush()
      self._log_file.close()
    self._log_file = None

    # reset the name to a new value...
    self._name = generate_random_name()
예제 #4
0
    def reset(self):
        '''Reset the output things.'''

        self._standard_input_records = []
        self._standard_output_records = []

        self._command_line = []

        # optional - possibly useful if using a batch submission
        # system or wanting to describe better what the job is doing

        self._input_files = []
        self._output_files = []
        self._scratch_directories = []
        if not self._log_file is None:
            self._log_file.flush()
            self._log_file.close()
        self._log_file = None

        # reset the name to a new value...
        self._name = generate_random_name()

        return