def doXdsIndexingIntegration(self, _xsDataCollection):
# Load the plugin
self._edPluginIndexing = self.loadPlugin(self._strIndexingPluginName,
"Indexing")
# XDS Indexing
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(_xsDataCollection)
self._edPluginIndexing.dataInput = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIndexing(
xsDataIndexingInput)
self._edPluginIndexing.executeSynchronous()
xsDataResultXDSIndexing = self._edPluginIndexing.dataOutput
if xsDataResultXDSIndexing.spaceGroupNumber is not None:
spaceGroupNumber = xsDataResultXDSIndexing.spaceGroupNumber.value
unitCell = xsDataResultXDSIndexing.unitCell
filePaths = xsDataResultXDSIndexing.filePaths
index = 1
for subWedge in _xsDataCollection.subWedge:
xsDataCollection = XSDataCollection()
xsDataCollection.addSubWedge(subWedge)
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(xsDataCollection)
xsDataInputXDSIntegration = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIntegration(
xsDataIndexingInput, spaceGroupNumber, unitCell, filePaths)
edPluginIntegration = self.loadPlugin(
self._strIntegrationPluginName,
"Integration_{0}".format(index))
edPluginIntegration.dataInput = xsDataInputXDSIntegration
edPluginIntegration.executeSynchronous()
# self._edPluginIntegration.dataInput = xsDataInputXDSIntegration
index += 1
def doXdsIndexingIntegration(self, _xsDataCollection):
# Load the plugin
self._edPluginIndexing = self.loadPlugin(self._strIndexingPluginName, "Indexing")
# XDS Indexing
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(_xsDataCollection)
self._edPluginIndexing.dataInput = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIndexing(xsDataIndexingInput)
self._edPluginIndexing.executeSynchronous()
xsDataResultXDSIndexing = self._edPluginIndexing.dataOutput
if xsDataResultXDSIndexing.spaceGroupNumber is not None:
spaceGroupNumber = xsDataResultXDSIndexing.spaceGroupNumber.value
unitCell = xsDataResultXDSIndexing.unitCell
filePaths = xsDataResultXDSIndexing.filePaths
index = 1
for subWedge in _xsDataCollection.subWedge:
xsDataCollection = XSDataCollection()
xsDataCollection.addSubWedge(subWedge)
xsDataIndexingInput = XSDataIndexingInput()
xsDataIndexingInput.setDataCollection(xsDataCollection)
xsDataInputXDSIntegration = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIntegration(xsDataIndexingInput,
spaceGroupNumber,
unitCell,
filePaths)
edPluginIntegration = self.loadPlugin(self._strIntegrationPluginName, "Integration_{0}".format(index))
edPluginIntegration.dataInput = xsDataInputXDSIntegration
edPluginIntegration.executeSynchronous()
# self._edPluginIntegration.dataInput = xsDataInputXDSIntegration
index += 1
def loadPluginIndexingInputData(self):
self.verboseDebug(
"EDPluginControlIndexingXDSv10.loadPluginIndexingInputData...")
xsDataIndexingInput = self.getDataInput()
from EDHandlerXSDataXDSv1_0 import EDHandlerXSDataXDSv1_0
self.getPluginIndexing(
).dataInput = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIndexing(
xsDataIndexingInput)
def doSuccessExecTemplate(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlXDSGenerateBackgroundImagev1_0.doSuccessExecTemplate")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlXDSGenerateBackgroundImagev1_0.doSuccessExecTemplate")
xsDataResultXDSGenerateBackgroundImage = self.__edPluginXDSGenerateBackgroundImage.getDataOutput()
xsDataResultControlXDSGenerateBackgroundImage = EDHandlerXSDataXDSv1_0.generateXSDataResultXDSGenerateBackgroundImage(
xsDataResultXDSGenerateBackgroundImage
)
self.setDataOutput(xsDataResultControlXDSGenerateBackgroundImage)
def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlXDSGenerateBackgroundImagev1_0.preProcess")
# Input data
xsDataCollection = self.getDataInput().getDataCollection()
xsDataInputXDS = EDHandlerXSDataXDSv1_0.generateXSDataInputXDS(xsDataCollection)
# Load the execution plugin
self.__edPluginXDSGenerateBackgroundImage = self.loadPlugin(self.__strXDSGenerateBackgroundImagePluginName)
self.__edPluginXDSGenerateBackgroundImage.setDataInput(xsDataInputXDS)
def getDataIndexingResult(self, _edPlugin):
"""
This method retrieves the indexing results from the XDS indexing plugin.
"""
self.DEBUG("EDPluginControlIndexingXDSv10.getDataIndexingResultFromMOSFLM")
xsDataResultXDSIndexing = _edPlugin.dataOutput
from EDHandlerXSDataXDSv1_0 import EDHandlerXSDataXDSv1_0
xsDataIndexingResult = EDHandlerXSDataXDSv1_0.generateXSDataIndexingResult(xsDataResultXDSIndexing,
self.getExperimentalCondition())
xsDataIndexingResult.setLabelitIndexing(XSDataBoolean(False))
return xsDataIndexingResult
def getDataIndexingResult(self, _edPlugin):
"""
This method retrieves the indexing results from the XDS indexing plugin.
"""
self.DEBUG(
"EDPluginControlIndexingXDSv10.getDataIndexingResultFromMOSFLM")
xsDataResultXDSIndexing = _edPlugin.dataOutput
from EDHandlerXSDataXDSv1_0 import EDHandlerXSDataXDSv1_0
xsDataIndexingResult = EDHandlerXSDataXDSv1_0.generateXSDataIndexingResult(
xsDataResultXDSIndexing, self.getExperimentalCondition())
xsDataIndexingResult.setLabelitIndexing(XSDataBoolean(False))
return xsDataIndexingResult
def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
EDVerbose.DEBUG(
"EDPluginControlXDSGenerateBackgroundImagev1_0.preProcess")
# Input data
xsDataCollection = self.getDataInput().getDataCollection()
xsDataInputXDS = EDHandlerXSDataXDSv1_0.generateXSDataInputXDS(
xsDataCollection)
# Load the execution plugin
self.__edPluginXDSGenerateBackgroundImage = self.loadPlugin(
self.__strXDSGenerateBackgroundImagePluginName)
self.__edPluginXDSGenerateBackgroundImage.setDataInput(xsDataInputXDS)
def doSuccessExecTemplate(self, _edPlugin=None):
EDVerbose.DEBUG(
"EDPluginControlXDSGenerateBackgroundImagev1_0.doSuccessExecTemplate"
)
self.retrieveSuccessMessages(
_edPlugin,
"EDPluginControlXDSGenerateBackgroundImagev1_0.doSuccessExecTemplate"
)
xsDataResultXDSGenerateBackgroundImage = self.__edPluginXDSGenerateBackgroundImage.getDataOutput(
)
xsDataResultControlXDSGenerateBackgroundImage = EDHandlerXSDataXDSv1_0.generateXSDataResultXDSGenerateBackgroundImage(
xsDataResultXDSGenerateBackgroundImage)
self.setDataOutput(xsDataResultControlXDSGenerateBackgroundImage)
def testGenerateXSDataInputXDSIndexing(self):
filename = "XSDataIndexingInput_reference.xml"
path = os.path.join(self.dataPath, filename)
xmlIndexingInput = EDUtilsTest.readAndParseFile(path)
from XSDataMXv1 import XSDataIndexingInput
xsDataIndexingInput = XSDataIndexingInput.parseString(xmlIndexingInput)
from EDHandlerXSDataXDSv1_0 import EDHandlerXSDataXDSv1_0
xsDataInputXDSIndexing = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIndexing(xsDataIndexingInput)
referenceFilename = "XSDataInputXDSIndexing_reference.xml"
referencePath = os.path.join(self.dataPath, referenceFilename)
xmlInputXDSIndexingReference = EDUtilsTest.readAndParseFile(referencePath)
EDAssert.equal(xmlInputXDSIndexingReference, xsDataInputXDSIndexing.marshal())
def testGenerateXSDataInputXDSIndexing(self):
filename = "XSDataIndexingInput_reference.xml"
path = os.path.join(self.dataPath, filename)
xmlIndexingInput = EDUtilsTest.readAndParseFile(path)
from XSDataMXv1 import XSDataIndexingInput
xsDataIndexingInput = XSDataIndexingInput.parseString(xmlIndexingInput)
from EDHandlerXSDataXDSv1_0 import EDHandlerXSDataXDSv1_0
xsDataInputXDSIndexing = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIndexing(
xsDataIndexingInput)
referenceFilename = "XSDataInputXDSIndexing_reference.xml"
referencePath = os.path.join(self.dataPath, referenceFilename)
xmlInputXDSIndexingReference = EDUtilsTest.readAndParseFile(
referencePath)
EDAssert.equal(xmlInputXDSIndexingReference,
xsDataInputXDSIndexing.marshal())
def testGenerateXSDataInputXDSIndexing(self):
pyStrFilename = "XSDataIndexingInput_reference.xml"
pyStrPath = os.path.join(self.m_pyStrDataPath, pyStrFilename)
pyStrXMLIndexingInput = self.readAndParseFile(pyStrPath)
from XSDataMXv1 import XSDataIndexingInput
xsDataIndexingInput = XSDataIndexingInput.parseString(pyStrXMLIndexingInput)
from EDHandlerXSDataXDSv1_0 import EDHandlerXSDataXDSv1_0
xsDataInputXDSIndexing = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIndexing(xsDataIndexingInput)
xsDataInputXDSIndexing.outputFile("XSDataInputXDSIndexing_reference.xml")
pyStrReferenceFilename = "XSDataInputXDSIndexing_reference.xml"
pyStrReferencePath = os.path.join(self.m_pyStrDataPath, pyStrReferenceFilename)
xsDataInputXDSIndexing.outputFile("XSDataInputXDSIndexing.xml")
pyStrXMLInputXDSIndexingReference = self.readAndParseFile(pyStrReferencePath)
EDAssert.equal(pyStrXMLInputXDSIndexingReference, xsDataInputXDSIndexing.marshal())
def testGenerateXSDataInputXDSIndexing(self):
pyStrFilename = "XSDataIndexingInput_reference.xml"
pyStrPath = os.path.join(self.m_pyStrDataPath, pyStrFilename)
pyStrXMLIndexingInput = self.readAndParseFile(pyStrPath)
from XSDataMXv1 import XSDataIndexingInput
xsDataIndexingInput = XSDataIndexingInput.parseString(
pyStrXMLIndexingInput)
from EDHandlerXSDataXDSv1_0 import EDHandlerXSDataXDSv1_0
xsDataInputXDSIndexing = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIndexing(
xsDataIndexingInput)
xsDataInputXDSIndexing.exportToFile(
"XSDataInputXDSIndexing_reference.xml")
pyStrReferenceFilename = "XSDataInputXDSIndexing_reference.xml"
pyStrReferencePath = os.path.join(self.m_pyStrDataPath,
pyStrReferenceFilename)
xsDataInputXDSIndexing.exportToFile("XSDataInputXDSIndexing.xml")
pyStrXMLInputXDSIndexingReference = self.readAndParseFile(
pyStrReferencePath)
EDAssert.equal(pyStrXMLInputXDSIndexingReference,
xsDataInputXDSIndexing.marshal())
def loadPluginIndexingInputData(self):
self.verboseDebug("EDPluginControlIndexingXDSv10.loadPluginIndexingInputData...")
xsDataIndexingInput = self.getDataInput()
from EDHandlerXSDataXDSv1_0 import EDHandlerXSDataXDSv1_0
self.getPluginIndexing().dataInput = EDHandlerXSDataXDSv1_0.generateXSDataInputXDSIndexing(xsDataIndexingInput)
