def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginExecMtz2Variousv1_0.process") self.htmlPagePath, self.jsonPath = self.createHtmlPage()
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG("EDPluginExecDIMPLEPHASERv10.process")
def process(self, _edObject = None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginMinimalXds.process")
def process(self, _oedObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginXDSv1_0.process") # It should not be possible to execute this abstract plugin if self.getPluginName() == "EDPluginXDSv1_0": raise ExectuteAbstractPluginError
def process(self): self.DEBUG('Truncate: process') EDPluginExecProcessScript.process(self)
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginMOSFLMv10.process") # It should not be possible to execute this abstract plugin if (self.getPluginName() == "EDPluginMOSFLMv10"): raise RuntimeError, "ExectuteAbstractPluginError"
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginExecDamstartv0_2.process")
def process(self, _edObject = None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginExecMtz2Variousv1_0.process")
def process(self, _edObject = None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG('*** EDPluginExecDIMPLECADv10.process') return
def process(self, _edObject = None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG("EDPluginExecDIMPLEPointlessOriginv10.process") return
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginExecDamstartv0_3.process")
def process(self, _oedObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginXDSv1_0.process") # It should not be possible to execute this abstract plugin if (self.getPluginName() == "EDPluginXDSv1_0"): raise ExectuteAbstractPluginError
def process(self): self.DEBUG('XdsToSca: process') EDPluginExecProcessScript.process(self)
def process(self, _edObject = None): self.DEBUG("EDPluginXscale.process") EDPluginExecProcessScript.process(self)
def process(self): self.DEBUG('Uniqueify: process') EDPluginExecProcessScript.process(self)
def process(self): self.DEBUG('Pointless: process') EDPluginExecProcessScript.process(self)
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG("EDPluginSTACv10.process") # It should not be possible to execute this abstract plugin if (self.getPluginName() == "EDPluginSTACv10"): raise ExectuteAbstractPluginError
def process(self, _edObject = None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG("EDPluginExecDIMPLEPHASERv10.process")
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginExecMtz2Variousv1_0.process")
def process(self, _edObject = None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG("*** EDPluginExecDIMPLEUNIQUEv10.process") return
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginExecGnomv0_2.process")
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG('*** EDPluginExecDIMPLETRUNCATEv10.process') return
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG("*** EDPluginExecDIMPLEUNIQUEv10.process") return
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG("EDPluginExecGnomv0_1.process")
def process(self): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginExecProcessScriptAutoRgv1_0.process") # Create some output data # 2.83326 0.011646 2.04258e+07 18565.3 47 81 0.783626 1 bioSaxsMerged.dat strOutput = self.readProcessLogFile() xsDataResult = XSDataResultAutoRg() dic_Rg = {} #key: filename, value: XSDataAutoRg listXSDOut = [] for line in strOutput.split(os.linesep): words = line.split(None, 8) if len(words) < 8: break try: xsData = XSDataAutoRg() filename = words[-1] xsData.rg = XSDataLength(float(words[0])) xsData.rgStdev = XSDataLength(float(words[1])) xsData.i0 = XSDataDouble(float(words[2])) xsData.i0Stdev = XSDataDouble(float(words[3])) xsData.firstPointUsed = XSDataInteger(int(words[4])) xsData.lastPointUsed = XSDataInteger(int(words[5])) xsData.quality = XSDataDouble(float(words[6])) xsData.isagregated = XSDataDouble(float(words[7])) except Exception: strError = "Error in parsing output:" + line self.error(strError) self.setFailure() else: xsData.filename = XSDataFile(XSDataString(filename)) dic_Rg[filename] = xsData # listXSDOut.append(xsData) if self.isFailure(): # Change failure output for ATSAS version >= 2.5 to micmic old version strErrOutput = self.readProcessErrorLogFile() for line in strErrOutput.split(os.linesep): if 'Not enough valid data' in line: words = line.split() try: xsData = XSDataAutoRg() filename = words[-1].strip("'.") xsData.rg = XSDataLength(0.0) xsData.rgStdev = XSDataLength(0.0) xsData.i0 = XSDataDouble(0.0) xsData.i0Stdev = XSDataDouble(0.0) xsData.firstPointUsed = XSDataInteger(0) xsData.lastPointUsed = XSDataInteger(0) xsData.quality = XSDataDouble(0.0) xsData.isagregated = XSDataDouble(0.0) except Exception: strError = "Error in parsing output:" + line self.error(strError) self.setFailure() else: xsData.filename = XSDataFile(XSDataString(filename)) dic_Rg[filename] = xsData if self.isFailure() and dic_Rg: # we have some data ... unset the failure flag self.setFailure(False) xsData_zero = XSDataAutoRg(isagregated=XSDataDouble(1.0), quality=XSDataDouble(0.0), lastPointUsed=XSDataInteger(0), firstPointUsed=XSDataInteger(0), i0Stdev=XSDataDouble(0.0), i0=XSDataDouble(0.0), rgStdev=XSDataLength(0.0), rg=XSDataLength(0.0)) for filename in self.inputCurve: if filename in dic_Rg: listXSDOut.append(dic_Rg[filename]) else: xsData_zero.filename = XSDataFile(XSDataString(filename)) listXSDOut.append(xsData_zero) xsDataResult.autoRgOut = listXSDOut self.setDataOutput(xsDataResult)
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG('*** EDPluginExecDIMPLEREFMACRigidBodyv10.process') return
def process(self, _edObject = None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG( '*** EDPluginExecDIMPLEREFMACRestrainedRefinementv10.process') return
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginH5ToCBFv1_0.process")
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginExecSupcombv0_3.process")
def process(self): EDPluginExecProcessScript.process(self)
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginMinimalXds.process")
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG("EDPluginExecDamfiltv0_1.process")
def process(self): self.DEBUG('Aimless: process') EDPluginExecProcessScript.process(self)
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) self.DEBUG("EDPluginH5ToCBFv1_1.process")
def process(self, _edObject=None): EDPluginExecProcessScript.process(self) EDVerbose.DEBUG("EDPluginExecDIMPLEPointlessOriginv10.process") return