Python EDPluginLabelitv1_1.preProcess 예제들

예제 #1

파일: EDPluginLabelitIndexingv1_1.py 프로젝트: yayahjb/edna-mx

 def preProcess(self, _edObject=None):
     """
     Sets up the Labelit command line
     """
     EDPluginLabelitv1_1.preProcess(self, _edObject)
     self.DEBUG("EDPluginLabelitIndexingv1_1.preProcess...")
     strCommandLabelit = "--index_only"
     if len(self.dataInput.image) > 2:
         file = open(
             os.path.join(self.getWorkingDirectory(),
                          "dataset_preferences.py"), "w")
         file.write("wedgelimit={0}\n".format(len(self.dataInput.image)))
         file.close()
     for xsDataImage in self.dataInput.image:
         strCommandLabelit = strCommandLabelit + " " + xsDataImage.getPath(
         ).getValue()
     self.setScriptCommandline(strCommandLabelit)
     if self.dataInput.forcedSpaceGroup is not None:
         self.strForcedSpaceGroup = self.dataInput.forcedSpaceGroup.value
         if self.strForcedSpaceGroup != "":
             strScriptCommandline = self.getScriptCommandline()
             self.setScriptCommandline(
                 "known_symmetry=%s %s" %
                 (self.strForcedSpaceGroup, strScriptCommandline))
     self.addListCommandPreExecution("export PYTHONPATH=\"\" ")
     self.addListCommandPreExecution(". %s" %
                                     self.getPathToLabelitSetpathScript())
     self.addListCommandPostExecution(
         "[ -f \"LABELIT_possible\" ] && labelit.mosflm_scripts")
     # Force name of log file
     self.setScriptLogFileName(
         self.compactPluginName(self.getClassName()) + ".log")

예제 #2

파일: EDPluginLabelitDistlv1_1.py 프로젝트: olofsvensson/edna-plugins-mx

 def preProcess(self, _edObject=None):
     """
     Sets up the Labelit command line
     """
     EDPluginLabelitv1_1.preProcess(self, _edObject)
     EDVerbose.DEBUG("EDPluginLabelitDistlv1_1.preProcess...")
     self.setScriptExecutable("labelit.distl")
     self.initaliseLabelitCommandLine()
     self.addListCommandPreExecution("export PYTHONPATH=\"\" ")
     self.addListCommandPreExecution(". %s" % self.getPathToLabelitSetpathScript())

예제 #3

 def preProcess(self, _edObject=None):
     """
     Sets up the Labelit command line
     """
     EDPluginLabelitv1_1.preProcess(self, _edObject)
     self.DEBUG("EDPluginLabelitDistlv1_1.preProcess...")
     self.setScriptExecutable("labelit.distl")
     self.initaliseLabelitCommandLine()
     self.addListCommandPreExecution("export PYTHONPATH=\"\" ")
     self.addListCommandPreExecution(". %s" % self.getPathToLabelitSetpathScript())

예제 #4

파일: EDPluginLabelitIndexingv1_1.py 프로젝트: olofsvensson/edna-plugins-mx

 def preProcess(self, _edObject=None):
     """
     Sets up the Labelit command line
     """
     EDPluginLabelitv1_1.preProcess(self, _edObject)
     EDVerbose.DEBUG("EDPluginLabelitIndexingv1_1.preProcess...")
     self.setScriptExecutable("labelit.screen")
     self.initaliseLabelitCommandLine()
     if self.hasDataInput("forcedSpaceGroup"):
         self.__strForcedSpaceGroup = self.getDataInput("forcedSpaceGroup")[0].getValue()
         strScriptCommandline = self.getScriptCommandline()
         self.setScriptCommandline("known_symmetry=%s %s" % (self.__strForcedSpaceGroup, strScriptCommandline))
     self.addListCommandPreExecution("export PYTHONPATH=\"\" ")
     self.addListCommandPreExecution(". %s" % self.getPathToLabelitSetpathScript())
     self.addListCommandPostExecution("[ -f \"LABELIT_possible\" ] && labelit.mosflm_scripts")

예제 #5

파일: EDPluginLabelitIndexingv1_1.py 프로젝트: kif/edna

 def preProcess(self, _edObject=None):
     """
     Sets up the Labelit command line
     """
     EDPluginLabelitv1_1.preProcess(self, _edObject)
     self.DEBUG("EDPluginLabelitIndexingv1_1.preProcess...")
     self.setScriptExecutable("labelit.screen")
     self.initaliseLabelitCommandLine()
     if self.hasDataInput("forcedSpaceGroup"):
         self.__strForcedSpaceGroup = self.getDataInput(
             "forcedSpaceGroup")[0].getValue()
         strScriptCommandline = self.getScriptCommandline()
         self.setScriptCommandline(
             "known_symmetry=%s %s" %
             (self.__strForcedSpaceGroup, strScriptCommandline))
     self.addListCommandPreExecution("export PYTHONPATH=\"\" ")
     self.addListCommandPreExecution(". %s" %
                                     self.getPathToLabelitSetpathScript())
     self.addListCommandPostExecution(
         "[ -f \"LABELIT_possible\" ] && labelit.mosflm_scripts")
     # Force name of log file
     self.setScriptLogFileName(
         self.compactPluginName(self.getClassName()) + ".log")

예제 #6

파일: EDPluginLabelitIndexingv1_1.py 프로젝트: IvarsKarpics/edna-mx

 def preProcess(self, _edObject=None):
     """
     Sets up the Labelit command line
     """
     EDPluginLabelitv1_1.preProcess(self, _edObject)
     self.DEBUG("EDPluginLabelitIndexingv1_1.preProcess...")
     strCommandLabelit = "--index_only"
     if len(self.dataInput.image) > 2:
         file = open(os.path.join(self.getWorkingDirectory(), "dataset_preferences.py"), "w")
         file.write("wedgelimit={0}\n".format(len(self.dataInput.image)))
         file.close()
     for xsDataImage in self.dataInput.image:
         strCommandLabelit = strCommandLabelit + " " + xsDataImage.getPath().getValue()
     self.setScriptCommandline(strCommandLabelit)
     if self.dataInput.forcedSpaceGroup is not None:
         self.strForcedSpaceGroup = self.dataInput.forcedSpaceGroup.value
         if self.strForcedSpaceGroup != "":
             strScriptCommandline = self.getScriptCommandline()
             self.setScriptCommandline("known_symmetry=%s %s" % (self.strForcedSpaceGroup, strScriptCommandline))
     self.addListCommandPreExecution("export PYTHONPATH=\"\" ")
     self.addListCommandPreExecution(". %s" % self.getPathToLabelitSetpathScript())
     self.addListCommandPostExecution("[ -f \"LABELIT_possible\" ] && labelit.mosflm_scripts")
     # Force name of log file
     self.setScriptLogFileName(self.compactPluginName(self.getClassName()) + ".log")