def preProcess(self, _oedObject=None): EDPluginSTACv2_0.preProcess(self) EDVerbose.DEBUG("EDPluginSTACAlignmentv2_0.preProcess") #bestfile.par #EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "bestfile.par" ), self.m_xsDataInput.getBestFileContentPar().getValue()) #self.writeBestfilePar( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "bestfile.par" ), self.getDataInput()[0].getBestFileContentPar().getValue() ) self.writeBestfilePar( os.path.join(self.getWorkingDirectory(), "bestfile.par"), self.getDataInput("inputBest")[0].getBestFileContentPar(). getValue()) #self.writeAlignmentRequest() - for now use a predefined request if (self.getDataInput("kappa_alignment_request") is not None): EDUtilsFile.writeFile( os.path.join(self.getWorkingDirectory(), "DNA_kappa_alignment_request"), self.getDataInput("kappa_alignment_request")[0].marshal()) else: EDUtilsFile.writeFile( os.path.join(self.getWorkingDirectory(), "DNA_kappa_alignment_request"), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_alignment_request><desired_orientation><v1>a*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>a*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>a*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>a*</v2><close>true</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><comment>First test parameter passed</comment></kappa_alignment_request>" ) #self.writeKappaSettings() - for now use a predefined datum (0;0;0) #EDUtilsFile.writeFile( os.path.join( self.getWorkingDirectory(), "DNA_STAC_Kappa_Settings" ), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>") self.writeKappaSettings()
def preProcess( self, _oedObject=None ): EDPluginSTACv2_0.preProcess( self ) self.DEBUG( "EDPluginSTACStrategyv2_0.preProcess" ) #bestfile.par #EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "bestfile.par" ), self.m_oxsDataBestFileContentPar.getValue()) #self.writeBestfilePar( os.path.join( self.getWorkingDirectory(), "bestfile.par" ), self.m_oxsDataBestFileContentPar.getValue() ) self.writeBestfilePar( os.path.join( self.getWorkingDirectory(), "bestfile.par" ), self.getDataInput( "inputBest" )[0].getBestFileContentPar().getValue() ) self.writeStrategyRequest() self.writeKappaSettings()
def preProcess(self, _oedObject=None): EDPluginSTACv2_0.preProcess(self) self.DEBUG("EDPluginSTACAlignmentv2_0.preProcess") #bestfile.par #EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "bestfile.par" ), self.m_xsDataInput.getBestFileContentPar().getValue()) #self.writeBestfilePar( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "bestfile.par" ), self.getDataInput()[0].getBestFileContentPar().getValue() ) self.writeBestfilePar(os.path.join(self.getWorkingDirectory(), "bestfile.par"), self.getDataInput("inputBest")[0].getBestFileContentPar().getValue()) #self.writeAlignmentRequest() - for now use a predefined request if (self.getDataInput( "kappa_alignment_request" ) is not None): EDUtilsFile.writeFile(os.path.join(self.getWorkingDirectory(), "DNA_kappa_alignment_request"), self.getDataInput( "kappa_alignment_request" )[0].marshal() ) else: EDUtilsFile.writeFile(os.path.join(self.getWorkingDirectory(), "DNA_kappa_alignment_request"), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_alignment_request><desired_orientation><v1>a*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>a*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>a*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>a*</v2><close>true</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><comment>First test parameter passed</comment></kappa_alignment_request>") #self.writeKappaSettings() - for now use a predefined datum (0;0;0) #EDUtilsFile.writeFile( os.path.join( self.getWorkingDirectory(), "DNA_STAC_Kappa_Settings" ), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>") self.writeKappaSettings()