def __init__(self, parent=None):
self._root_folder = ''
self._fae = FeatureAnalysisPipelines()
self.sheet_dict = dict()
self.logger = eclog(os.path.split(__file__)[-1]).GetLogger()
self.__is_ui_ready = False
super(VisualizationConnection, self).__init__(parent)
self.setupUi(self)
self.buttonLoadResult.clicked.connect(self.LoadAll)
self.buttonClearResult.clicked.connect(self.ClearAll)
self.buttonSave.clicked.connect(self.Save)
self.buttonGenerateDescription.clicked.connect(self.GenerateDescription)
self.__plt_roc = self.canvasROC.getFigure().add_subplot(111)
self.__plt_plot = self.canvasPlot.getFigure().add_subplot(111)
self.__contribution = self.canvasFeature.getFigure().add_subplot(111)
# Update Sheet
self.tableClinicalStatistic.setEditTriggers(QAbstractItemView.NoEditTriggers)
self.tableClinicalStatistic.setSelectionBehavior(QAbstractItemView.SelectRows)
self.comboSheet.currentIndexChanged.connect(self.UpdateSheet)
self.checkMaxFeatureNumber.stateChanged.connect(self.UpdateSheet)
# self.tableClinicalStatistic.doubleClicked.connect(self.ShowOneResult)
self.tableClinicalStatistic.itemSelectionChanged.connect(self.ShowOneResult)
# Update ROC canvas
self.comboNormalizer.currentIndexChanged.connect(self.UpdateROC)
self.comboDimensionReduction.currentIndexChanged.connect(self.UpdateROC)
self.comboFeatureSelector.currentIndexChanged.connect(self.UpdateROC)
self.comboClassifier.currentIndexChanged.connect(self.UpdateROC)
self.spinBoxFeatureNumber.valueChanged.connect(self.UpdateROC)
self.checkROCCVTrain.stateChanged.connect(self.UpdateROC)
self.checkROCCVValidation.stateChanged.connect(self.UpdateROC)
self.checkROCTrain.stateChanged.connect(self.UpdateROC)
self.checkROCTest.stateChanged.connect(self.UpdateROC)
# Update Plot canvas
self.comboPlotX.currentIndexChanged.connect(self.UpdatePlot)
self.comboPlotY.currentIndexChanged.connect(self.UpdatePlot)
self.comboPlotNormalizer.currentIndexChanged.connect(self.UpdatePlot)
self.comboPlotDimensionReduction.currentIndexChanged.connect(self.UpdatePlot)
self.comboPlotFeatureSelector.currentIndexChanged.connect(self.UpdatePlot)
self.comboPlotClassifier.currentIndexChanged.connect(self.UpdatePlot)
self.spinPlotFeatureNumber.valueChanged.connect(self.UpdatePlot)
self.checkPlotCVTrain.stateChanged.connect(self.UpdatePlot)
self.checkPlotCVValidation.stateChanged.connect(self.UpdatePlot)
self.checkPlotTrain.stateChanged.connect(self.UpdatePlot)
# self.checkPlotTest.stateChanged.connect(self.UpdatePlot)
# Update Contribution canvas
self.radioContributionFeatureSelector.toggled.connect(self.UpdateContribution)
self.radioContributionClassifier.toggled.connect(self.UpdateContribution)
self.comboContributionNormalizor.currentIndexChanged.connect(self.UpdateContribution)
self.comboContributionDimension.currentIndexChanged.connect(self.UpdateContribution)
self.comboContributionFeatureSelector.currentIndexChanged.connect(self.UpdateContribution)
self.comboContributionClassifier.currentIndexChanged.connect(self.UpdateContribution)
self.spinContributeFeatureNumber.valueChanged.connect(self.UpdateContribution)
def __init__(self, parent=None):
self.training_data_container = DataContainer()
self.testing_data_container = DataContainer()
self.fae = FeatureAnalysisPipelines()
self.logger = eclog(os.path.split(__file__)[-1]).GetLogger()
self.__process_normalizer_list = []
self.__process_dimension_reduction_list = []
self.__process_feature_selector_list = []
self.__process_feature_number_list = []
self.__process_classifier_list = []
super(ProcessConnection, self).__init__(parent)
self.setupUi(self)
self.buttonLoadTrainingData.clicked.connect(self.LoadTrainingData)
self.buttonLoadTestingData.clicked.connect(self.LoadTestingData)
self.checkNormalizeUnit.clicked.connect(self.UpdatePipelineText)
self.checkNormalizeZeroCenter.clicked.connect(self.UpdatePipelineText)
self.checkNormalizeUnitWithZeroCenter.clicked.connect(
self.UpdatePipelineText)
self.checkNormalizationAll.clicked.connect(self.SelectAllNormalization)
self.checkPCA.clicked.connect(self.UpdatePipelineText)
self.checkRemoveSimilarFeatures.clicked.connect(
self.UpdatePipelineText)
self.checkPreprocessAll.clicked.connect(self.SelectAllPreprocess)
self.spinBoxMinFeatureNumber.valueChanged.connect(
self.MinFeatureNumberChange)
self.spinBoxMaxFeatureNumber.valueChanged.connect(
self.MaxFeatureNumberChange)
self.checkANOVA.clicked.connect(self.UpdatePipelineText)
self.checkRFE.clicked.connect(self.UpdatePipelineText)
self.checkRelief.clicked.connect(self.UpdatePipelineText)
self.checkMRMR.clicked.connect(self.UpdatePipelineText)
self.checkFeatureSelectorAll.clicked.connect(
self.SelectAllFeatureSelector)
self.checkSVM.clicked.connect(self.UpdatePipelineText)
self.checkLDA.clicked.connect(self.UpdatePipelineText)
self.checkAE.clicked.connect(self.UpdatePipelineText)
self.checkRF.clicked.connect(self.UpdatePipelineText)
self.checkLogisticRegression.clicked.connect(self.UpdatePipelineText)
self.checkLRLasso.clicked.connect(self.UpdatePipelineText)
self.checkAdaboost.clicked.connect(self.UpdatePipelineText)
self.checkDecisionTree.clicked.connect(self.UpdatePipelineText)
self.checkNaiveBayes.clicked.connect(self.UpdatePipelineText)
self.checkGaussianProcess.clicked.connect(self.UpdatePipelineText)
self.checkClassifierAll.clicked.connect(self.SelectAllClassifier)
self.radio5folder.clicked.connect(self.UpdatePipelineText)
self.radio10Folder.clicked.connect(self.UpdatePipelineText)
self.radioLOO.clicked.connect(self.UpdatePipelineText)
self.buttonRun.clicked.connect(self.Run)
self.UpdatePipelineText()
self.SetStateButtonBeforeLoading(False)
def __init__(self, parent=None):
self._root_folder = ''
self._fae = FeatureAnalysisPipelines()
self._training_data_container = DataContainer()
self._testing_data_container = DataContainer()
self._current_pipeline = OnePipeline()
super(ReportConnection, self).__init__(parent)
self.setupUi(self)
self.buttonLoadTrainingData.clicked.connect(self.LoadTrainingData)
self.buttonClearTrainingData.clicked.connect(self.ClearTrainingData)
self.buttonLoadTestingData.clicked.connect(self.LoadTestingData)
self.buttonClearTestingData.clicked.connect(self.ClearTestingData)
self.buttonLoadResult.clicked.connect(self.LoadAll)
self.buttonClearResult.clicked.connect(self.ClearAll)
self.buttonGenerate.clicked.connect(self.Generate)
self.__plt_roc = self.canvasROC.getFigure().add_subplot(111)
# Update ROC canvas
self.comboNormalizer.currentIndexChanged.connect(self.UpdateROC)
self.comboDimensionReduction.currentIndexChanged.connect(
self.UpdateROC)
self.comboFeatureSelector.currentIndexChanged.connect(self.UpdateROC)
self.comboClassifier.currentIndexChanged.connect(self.UpdateROC)
self.spinBoxFeatureNumber.valueChanged.connect(self.UpdateROC)
self.checkROCTrain.stateChanged.connect(self.UpdateROC)
self.checkROCValidation.stateChanged.connect(self.UpdateROC)
self.checkROCTest.stateChanged.connect(self.UpdateROC)
self.SetPipelineStateButton(False)
def __init__(self, parent=None):
self._root_folder = ''
self._fae = FeatureAnalysisPipelines()
self.sheet_dict = dict()
super(VisualizationConnection, self).__init__(parent)
self.setupUi(self)
self.buttonLoadResult.clicked.connect(self.LoadAll)
self.buttonClearResult.clicked.connect(self.ClearAll)
self.buttonSave.clicked.connect(self.Save)
self.__plt_roc = self.canvasROC.getFigure().add_subplot(111)
self.__plt_plot = self.canvasPlot.getFigure().add_subplot(111)
self.__contribution = self.canvasFeature.getFigure().add_subplot(111)
# Update Sheet
self.comboSheet.currentIndexChanged.connect(self.UpdateSheet)
self.checkMaxFeatureNumber.stateChanged.connect(self.UpdateSheet)
# Update ROC canvas
self.comboNormalizer.currentIndexChanged.connect(self.UpdateROC)
self.comboDimensionReduction.currentIndexChanged.connect(self.UpdateROC)
self.comboFeatureSelector.currentIndexChanged.connect(self.UpdateROC)
self.comboClassifier.currentIndexChanged.connect(self.UpdateROC)
self.spinBoxFeatureNumber.valueChanged.connect(self.UpdateROC)
self.checkROCCVTrain.stateChanged.connect(self.UpdateROC)
self.checkROCCVValidation.stateChanged.connect(self.UpdateROC)
self.checkROCTrain.stateChanged.connect(self.UpdateROC)
self.checkROCTest.stateChanged.connect(self.UpdateROC)
# Update Plot canvas
self.comboPlotX.currentIndexChanged.connect(self.UpdatePlot)
self.comboPlotY.currentIndexChanged.connect(self.UpdatePlot)
self.checkPlotMaximum.stateChanged.connect(self.UpdatePlot)
self.comboPlotNormalizer.currentIndexChanged.connect(self.UpdatePlot)
self.comboPlotDimensionReduction.currentIndexChanged.connect(self.UpdatePlot)
self.comboPlotFeatureSelector.currentIndexChanged.connect(self.UpdatePlot)
self.comboPlotClassifier.currentIndexChanged.connect(self.UpdatePlot)
self.spinPlotFeatureNumber.valueChanged.connect(self.UpdatePlot)
self.checkPlotCVTrain.stateChanged.connect(self.UpdatePlot)
self.checkPlotCVValidation.stateChanged.connect(self.UpdatePlot)
self.checkPlotTrain.stateChanged.connect(self.UpdatePlot)
self.checkPlotTest.stateChanged.connect(self.UpdatePlot)
# Update Contribution canvas
self.checkContributionShow.stateChanged.connect(self.UpdateContribution)
self.radioContributionFeatureSelector.toggled.connect(self.UpdateContribution)
self.radioContributionClassifier.toggled.connect(self.UpdateContribution)
self.comboContributionFeatureSelector.currentIndexChanged.connect(self.UpdateContribution)
self.comboContributionClassifier.currentIndexChanged.connect(self.UpdateContribution)
self.spinFeatureSelectorFeatureNumber.valueChanged.connect(self.UpdateContribution)
self.spinClassifierFeatureNumber.valueChanged.connect(self.UpdateContribution)
def __init__(self, parent=None):
self.__training_data_container = DataContainer()
self.__testing_data_container = DataContainer()
self.__fae = FeatureAnalysisPipelines()
self.__process_normalizer_list = []
self.__process_dimension_reduction_list = []
self.__process_feature_selector_list = []
self.__process_feature_number_list = []
self.__process_classifier_list = []
super(ProcessConnection, self).__init__(parent)
self.setupUi(self)
self.buttonLoadTrainingData.clicked.connect(self.LoadTrainingData)
self.buttonLoadTestingData.clicked.connect(self.LoadTestingData)
self.checkNormalizeUnit.clicked.connect(self.UpdatePipelineText)
self.checkNormalizeZeroCenter.clicked.connect(self.UpdatePipelineText)
self.checkNormalizeUnitWithZeroCenter.clicked.connect(
self.UpdatePipelineText)
self.checkPCA.clicked.connect(self.UpdatePipelineText)
self.checkRemoveSimilarFeatures.clicked.connect(
self.UpdatePipelineText)
self.spinBoxMinFeatureNumber.valueChanged.connect(
self.MinFeatureNumberChange)
self.spinBoxMaxFeatureNumber.valueChanged.connect(
self.MaxFeatureNumberChange)
self.checkANOVA.clicked.connect(self.UpdatePipelineText)
self.checkRFE.clicked.connect(self.UpdatePipelineText)
self.checkRelief.clicked.connect(self.UpdatePipelineText)
self.checkSVM.clicked.connect(self.UpdatePipelineText)
self.checkLDA.clicked.connect(self.UpdatePipelineText)
self.checkAE.clicked.connect(self.UpdatePipelineText)
self.checkRF.clicked.connect(self.UpdatePipelineText)
self.buttonRun.clicked.connect(self.Run)
self.UpdatePipelineText()
def ClearAll(self):
self.buttonLoadResult.setEnabled(True)
self.buttonClearResult.setEnabled(False)
self._fae = FeatureAnalysisPipelines()
self.textEditDescription.setPlainText('')
self.lineEditResultPath.setText('')
self.InitialUi()
self.checkROCTrain.setChecked(False)
self.checkROCValidation.setChecked(False)
self.checkROCTest.setChecked(False)
self.spinBoxFeatureNumber.setValue(1)
self.canvasROC.getFigure().clear()
self.canvasROC.draw()
self.SetPipelineStateButton(False)
def ClearAll(self):
self.buttonLoadResult.setEnabled(True)
self.buttonSave.setEnabled(False)
self.buttonClearResult.setEnabled(False)
self.checkROCCVTrain.setChecked(False)
self.checkROCCVValidation.setChecked(False)
self.checkROCTrain.setChecked(False)
self.checkROCTest.setChecked(False)
self.checkPlotCVTrain.setChecked(False)
self.checkPlotCVValidation.setChecked(False)
self.checkPlotTrain.setChecked(False)
self.checkPlotTest.setChecked(False)
self.checkPlotMaximum.setChecked(False)
self.checkContributionShow.setChecked(False)
self.radioContributionFeatureSelector.setChecked(True)
self.radioContributionFeatureSelector.setChecked(False)
self.checkMaxFeatureNumber.setChecked(False)
self.canvasROC.getFigure().clear()
self.canvasPlot.getFigure().clear()
self.canvasFeature.getFigure().clear()
self.__plt_roc = self.canvasROC.getFigure().add_subplot(111)
self.__plt_plot = self.canvasPlot.getFigure().add_subplot(111)
self.__contribution = self.canvasFeature.getFigure().add_subplot(111)
self.canvasROC.draw()
self.canvasPlot.draw()
self.canvasFeature.draw()
self.textEditDescription.clear()
self.lineEditResultPath.clear()
self.comboSheet.clear()
self.comboClassifier.clear()
self.comboDimensionReduction.clear()
self.comboNormalizer.clear()
self.comboFeatureSelector.clear()
self.comboPlotClassifier.clear()
self.comboPlotDimensionReduction.clear()
self.comboPlotFeatureSelector.clear()
self.comboPlotNormalizer.clear()
self.comboPlotX.clear()
self.comboPlotY.clear()
self.comboContributionClassifier.clear()
self.comboContributionFeatureSelector.clear()
self.spinBoxFeatureNumber.setValue(0)
self.spinPlotFeatureNumber.setValue(0)
self.spinPlotFeatureNumber.setEnabled(False)
self.spinFeatureSelectorFeatureNumber.setValue(1)
self.spinClassifierFeatureNumber.setValue(1)
self.tableClinicalStatistic.clear()
self.tableClinicalStatistic.setRowCount(0)
self.tableClinicalStatistic.setColumnCount(0)
self.tableClinicalStatistic.setHorizontalHeaderLabels(list([]))
self.tableClinicalStatistic.setVerticalHeaderLabels(list([]))
self._fae = FeatureAnalysisPipelines()
self._root_folder = ''
self.sheet_dict = dict()