def test_is_gaudi_child(self):
from GangaLHCb.Lib.RTHandlers.RTHUtils import is_gaudi_child
assert is_gaudi_child(DaVinci()._impl)
#assert is_gaudi_child(Gaudi()._impl)
assert not is_gaudi_child(GaudiPython()._impl)
assert not is_gaudi_child(Bender()._impl)
def prepare(self, app, appsubconfig, appmasterconfig, jobmasterconfig):
inputsandbox, outputsandbox = sandbox_prepare(app, appsubconfig, appmasterconfig, jobmasterconfig)
job = app.getJobObject()
if job.inputdata:
if not job.splitter:
if len(job.inputdata) > 100:
raise BackendError(
"You're submitting a job to Dirac with no splitter and more than 100 files, please add a splitter and try again!"
)
outputfiles = [this_file for this_file in job.outputfiles if isType(this_file, DiracFile)]
data_str = "import os\n"
data_str += "execfile('data.py')\n"
if hasattr(job, "_splitter_data"):
data_str += job._splitter_data
inputsandbox.append(FileBuffer("data-wrapper.py", data_str))
input_data = []
# Cant wait to get rid of this when people no-longer specify
# inputdata in options file
#######################################################################
# splitters ensure that subjobs pick up inputdata from job over that in
# optsfiles but need to take care of unsplit jobs
if not job.master:
share_path = os.path.join(get_share_path(app), "inputdata", "options_data.pkl")
if not job.inputdata:
if os.path.exists(share_path):
f = open(share_path, "r+b")
job.inputdata = pickle.load(f)
f.close()
#######################################################################
# Cant wait to get rid of this when people no-longer specify
# outputsandbox or outputdata in options file
#######################################################################
share_path = os.path.join(get_share_path(app), "output", "options_parser.pkl")
if os.path.exists(share_path):
# if not os.path.exists(share_path):
# raise GangaException('could not find the parser')
f = open(share_path, "r+b")
parser = pickle.load(f)
f.close()
outbox, outdata = parser.get_output(job)
from Ganga.GPIDev.Lib.File import FileUtils
from Ganga.GPIDev.Base.Filters import allComponentFilters
fileTransform = allComponentFilters["gangafiles"]
outdata_files = [
fileTransform(this_file, None)
for this_file in outdata
if not FileUtils.doesFileExist(this_file, job.outputfiles)
]
job.non_copyable_outputfiles.extend(
[output_file for output_file in outdata_files if not isType(output_file, DiracFile)]
)
outbox_files = [
fileTransform(this_file, None)
for this_file in outbox
if not FileUtils.doesFileExist(this_file, job.outputfiles)
]
job.non_copyable_outputfiles.extend(
[outbox_file for outbox_file in outbox_files if not isType(outbox_file, DiracFile)]
)
outputsandbox = [f.namePattern for f in job.non_copyable_outputfiles]
outputsandbox.extend([f.namePattern for f in job.outputfiles if not isType(f, DiracFile)])
outputsandbox = unique(outputsandbox) # + outbox[:])
#######################################################################
input_data_dirac, parametricinput_data = dirac_inputdata(job.application)
if input_data_dirac is not None:
for f in input_data_dirac:
if isType(f, DiracFile):
input_data.append(f.lfn)
elif isType(f, str):
input_data.append(f)
else:
raise ApplicationConfigurationError(
"Don't know How to handle anythig other than DiracFiles or strings to LFNs!"
)
commandline = "python ./gaudipython-wrapper.py"
if is_gaudi_child(app):
commandline = "gaudirun.py "
commandline += " ".join([str(arg) for arg in app.args])
commandline += " options.pkl data-wrapper.py"
logger.debug("Command line: %s: ", commandline)
gaudi_script_path = os.path.join(job.getInputWorkspace().getPath(), "gaudi-script.py")
script_generator(
gaudi_script_template(),
# remove_unreplaced = False,
outputfile_path=gaudi_script_path,
PLATFORM=app.platform,
COMMAND=commandline,
XMLSUMMARYPARSING=getXMLSummaryScript() # ,
# OUTPUTFILESINJECTEDCODE = getWNCodeForOutputPostprocessing(job, ' ')
)
# logger.debug( "input_data %s" % str( input_data ) )
# We want to propogate the ancestor depth to DIRAC when we have
# inputdata set
if job.inputdata is not None and isType(job.inputdata, LHCbDataset):
# As the RT Handler we already know we have a Dirac backend
if type(job.backend.settings) is not dict:
raise ApplicationConfigurationError(None, "backend.settings should be a dict")
if "AncestorDepth" in job.backend.settings:
ancestor_depth = job.backend.settings["AncestorDepth"]
else:
ancestor_depth = job.inputdata.depth
else:
ancestor_depth = 0
lhcbdirac_script_template = lhcbdiracAPI_script_template()
lhcb_dirac_outputfiles = lhcbdirac_outputfile_jdl(outputfiles)
# not necessary to use lhcbdiracAPI_script_template any more as doing our own uploads to Dirac
# remove after Ganga6 release
# NOTE special case for replicas: replicate string must be empty for no
# replication
dirac_script = script_generator(
lhcbdirac_script_template,
DIRAC_IMPORT="from LHCbDIRAC.Interfaces.API.DiracLHCb import DiracLHCb",
DIRAC_JOB_IMPORT="from LHCbDIRAC.Interfaces.API.LHCbJob import LHCbJob",
DIRAC_OBJECT="DiracLHCb()",
JOB_OBJECT="LHCbJob()",
NAME=mangle_job_name(app),
APP_NAME=app.appname,
APP_VERSION=app.version,
APP_SCRIPT=gaudi_script_path,
APP_LOG_FILE="Ganga_%s_%s.log" % (app.appname, app.version),
INPUTDATA=input_data,
PARAMETRIC_INPUTDATA=parametricinput_data,
OUTPUT_SANDBOX=API_nullifier(outputsandbox),
OUTPUTFILESSCRIPT=lhcb_dirac_outputfiles,
# job.fqid,#outputdata_path,
OUTPUT_PATH="",
OUTPUT_SE=getConfig("DIRAC")["DiracOutputDataSE"],
SETTINGS=diracAPI_script_settings(job.application),
DIRAC_OPTS=job.backend.diracOpts,
PLATFORM=app.platform,
REPLICATE="True" if getConfig("DIRAC")["ReplicateOutputData"] else "",
ANCESTOR_DEPTH=ancestor_depth,
## This is to be modified in the final 'submit' function in the backend
## The backend also handles the inputfiles DiracFiles ass appropriate
INPUT_SANDBOX="##INPUT_SANDBOX##",
)
logger.debug("prepare: LHCbGaudiDiracRunTimeHandler")
return StandardJobConfig(dirac_script, inputbox=unique(inputsandbox), outputbox=unique(outputsandbox))
def prepare(self, app, appsubconfig, appmasterconfig, jobmasterconfig):
logger.debug("Prepare")
inputsandbox, outputsandbox = sandbox_prepare(app, appsubconfig,
appmasterconfig,
jobmasterconfig)
job = stripProxy(app).getJobObject()
if job.inputdata:
if not job.splitter:
if len(job.inputdata) > 100:
raise BackendError(
"You're submitting a job to Dirac with no splitter and more than 100 files, please add a splitter and try again!"
)
outputfiles = [
this_file for this_file in job.outputfiles
if isType(this_file, DiracFile)
]
data_str = 'import os\n'
data_str += 'execfile(\'data.py\')\n'
if hasattr(job, '_splitter_data'):
data_str += job._splitter_data
inputsandbox.append(FileBuffer('data-wrapper.py', data_str))
input_data = []
# Cant wait to get rid of this when people no-longer specify
# inputdata in options file
#######################################################################
# splitters ensure that subjobs pick up inputdata from job over that in
# optsfiles but need to take care of unsplit jobs
if not job.master:
share_path = os.path.join(get_share_path(app), 'inputdata',
'options_data.pkl')
if not job.inputdata:
if os.path.exists(share_path):
f = open(share_path, 'r+b')
job.inputdata = pickle.load(f)
f.close()
#######################################################################
# Cant wait to get rid of this when people no-longer specify
# outputsandbox or outputdata in options file
#######################################################################
share_path = os.path.join(get_share_path(app), 'output',
'options_parser.pkl')
if os.path.exists(share_path):
# if not os.path.exists(share_path):
# raise GangaException('could not find the parser')
f = open(share_path, 'r+b')
parser = pickle.load(f)
f.close()
outbox, outdata = parser.get_output(job)
from Ganga.GPIDev.Lib.File import FileUtils
from Ganga.GPIDev.Base.Filters import allComponentFilters
fileTransform = allComponentFilters['gangafiles']
outdata_files = [
fileTransform(this_file, None) for this_file in outdata
if not FileUtils.doesFileExist(this_file, job.outputfiles)
]
job.non_copyable_outputfiles.extend([
output_file for output_file in outdata_files
if not isType(output_file, DiracFile)
])
outbox_files = [
fileTransform(this_file, None) for this_file in outbox
if not FileUtils.doesFileExist(this_file, job.outputfiles)
]
job.non_copyable_outputfiles.extend([
outbox_file for outbox_file in outbox_files
if not isType(outbox_file, DiracFile)
])
outputsandbox = [
f.namePattern for f in job.non_copyable_outputfiles
]
outputsandbox.extend([
f.namePattern for f in job.outputfiles
if not isType(f, DiracFile)
])
outputsandbox = unique(outputsandbox) # + outbox[:])
#######################################################################
input_data_dirac, parametricinput_data = dirac_inputdata(
job.application)
if input_data_dirac is not None:
for f in input_data_dirac:
if isType(f, DiracFile):
input_data.append(f.lfn)
elif isType(f, str):
input_data.append(f)
else:
raise ApplicationConfigurationError(
"Don't know How to handle anythig other than DiracFiles or strings to LFNs!"
)
commandline = "python ./gaudipython-wrapper.py"
if is_gaudi_child(app):
commandline = 'gaudirun.py '
commandline += ' '.join([str(arg) for arg in app.args])
commandline += ' options.pkl data-wrapper.py'
logger.debug('Command line: %s: ', commandline)
gaudi_script_path = os.path.join(job.getInputWorkspace().getPath(),
"gaudi-script.py")
script_generator(
gaudi_script_template(),
#remove_unreplaced = False,
outputfile_path=gaudi_script_path,
PLATFORM=app.platform,
COMMAND=commandline,
XMLSUMMARYPARSING=getXMLSummaryScript() # ,
#OUTPUTFILESINJECTEDCODE = getWNCodeForOutputPostprocessing(job, ' ')
)
#logger.debug( "input_data %s" % str( input_data ) )
# We want to propogate the ancestor depth to DIRAC when we have
# inputdata set
if job.inputdata is not None and isType(job.inputdata, LHCbDataset):
# As the RT Handler we already know we have a Dirac backend
if type(job.backend.settings) is not dict:
raise ApplicationConfigurationError(
None, 'backend.settings should be a dict')
if 'AncestorDepth' in job.backend.settings:
ancestor_depth = job.backend.settings['AncestorDepth']
else:
ancestor_depth = job.inputdata.depth
else:
ancestor_depth = 0
lhcbdirac_script_template = lhcbdiracAPI_script_template()
lhcb_dirac_outputfiles = lhcbdirac_outputfile_jdl(outputfiles)
# not necessary to use lhcbdiracAPI_script_template any more as doing our own uploads to Dirac
# remove after Ganga6 release
# NOTE special case for replicas: replicate string must be empty for no
# replication
dirac_script = script_generator(
lhcbdirac_script_template,
DIRAC_IMPORT=
'from LHCbDIRAC.Interfaces.API.DiracLHCb import DiracLHCb',
DIRAC_JOB_IMPORT=
'from LHCbDIRAC.Interfaces.API.LHCbJob import LHCbJob',
DIRAC_OBJECT='DiracLHCb()',
JOB_OBJECT='LHCbJob()',
NAME=mangle_job_name(app),
APP_NAME=stripProxy(app).appname,
APP_VERSION=app.version,
APP_SCRIPT=gaudi_script_path,
APP_LOG_FILE='Ganga_%s_%s.log' %
(stripProxy(app).appname, app.version),
INPUTDATA=input_data,
PARAMETRIC_INPUTDATA=parametricinput_data,
OUTPUT_SANDBOX=API_nullifier(outputsandbox),
OUTPUTFILESSCRIPT=lhcb_dirac_outputfiles,
# job.fqid,#outputdata_path,
OUTPUT_PATH="",
OUTPUT_SE=getConfig('DIRAC')['DiracOutputDataSE'],
SETTINGS=diracAPI_script_settings(job.application),
DIRAC_OPTS=job.backend.diracOpts,
PLATFORM=app.platform,
REPLICATE='True'
if getConfig('DIRAC')['ReplicateOutputData'] else '',
ANCESTOR_DEPTH=ancestor_depth,
## This is to be modified in the final 'submit' function in the backend
## The backend also handles the inputfiles DiracFiles ass appropriate
INPUT_SANDBOX='##INPUT_SANDBOX##')
logger.debug("prepare: LHCbGaudiDiracRunTimeHandler")
return StandardJobConfig(dirac_script,
inputbox=unique(inputsandbox),
outputbox=unique(outputsandbox))